These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTCCATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTCGTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCCGTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCATCGCCGGCGCTGCCANGCTNACTCCGTGCAGG-TGAATGTGGCGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAGCAAGCATCAGGTGCCCACCGGCGCCAACCCGGACTCCAATTAGCTAGGCAGTAATTAATTAGCTAATTAACCTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCCTGCCATGCATTCTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGTTGAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA] [+] EMBL AU076191 [CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTCCATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTCGTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCCGTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCATCGCCGGCGCTGCCANGCTNACTCCGTGCAGG TGAATGTGGCGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAGCAAGCATCAGGTGCCCACCGGCGCCAACCCGGACTCCAATTAGCTAGGCAGTAATTAATTAGCTAATTAACCTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCCTGCCATGCATTCTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGTTGAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA] [+] EMBL AU076190 [ TCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTCCATCCCTTGCGTGTGCATGGCGAGAG ATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTCGTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATG CGCCGCCGCCGCCGACGCCGTCGACAGGGACGACCCCGTTGTGACGGCGACGG CGGCCGGGGC GCGGTTTCTCCCATCGCCGGCG TGCAGTGC ACTCCGT NAGGTTGAATGTGGCGGCTCATCCGTGGAGCAAGGANAGGAGGA GAGCAG AGAAGA ] consensusID : consensus_3911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GACGACCCCGTTGTGACGGCGACGTCCGCCAGGGCCGGGGGTTTCTCCCATCGCCGGCAGTGCAGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGACAGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAGACAAGCATCAGGTGCCGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTAATTAGCTAATTAACACTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGCATTGTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGCTTGAGCCTAATATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCAAAAA] [+] EMBL BI796997 [GACGACCCCGTTGTGACGGCGACGTCCGCCAGGGCCGGGGGTTTCTCCCATCGCCGGCAGTGCAGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGACAGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAGACAAGCATCAGGTGCCGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTAATTAGCTAATTAACACTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGCATTGTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGCTTGAGCCTAATATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3911#0 CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTC 60 consensus_3911#1 ------------------------------------------------------------ consensus_3911#0 CATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTC 120 consensus_3911#1 ------------------------------------------------------------ consensus_3911#0 GTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCC 180 consensus_3911#1 ------------------------------------------------------------ consensus_3911#0 GTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCA 240 consensus_3911#1 ---------GACGACCCCGTTGTGACGGCGACGTCCG-CCAGGGCCGGGGGTTTCTCCCA 50 ************************ *** ** ******* *********** consensus_3911#0 TCGCCGGCGCTGCCANGCTNACTCCGTGCAGGTGAATGTGGCGGCTCATCCGTGGAGCAA 300 consensus_3911#1 TCGCCGGCAGTGC-AGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAA 109 ******** *** * ************ ******* ****************** consensus_3911#0 GGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAG 360 consensus_3911#1 GGAGAGGAGGAGGAC----AGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAG 165 ************** *************** ********************** consensus_3911#0 -CAAGCATCAGGTGCCCACCGGCGCCAA-CCCGGACTCCAA-TTAGCTAGGCAGTAATTA 417 consensus_3911#1 ACAAGCATCAGGTGCCGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTA 225 *************** *********** ************ ******** ******** consensus_3911#0 ATTAGCTAATTAAC-CTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCC--TGCCATGC 474 consensus_3911#1 ATTAGCTAATTAACACTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGC 285 ************** ******************************** ** ******** consensus_3911#0 ATTCTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAG 534 consensus_3911#1 ATTGTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAG 345 *** ******************************************************** consensus_3911#0 CTTG-TTGAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA------------- 580 consensus_3911#1 CTTGCTTGAGCCTAATATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCA 405 **** ********************************* * * consensus_3911#0 ---- consensus_3911#1 AAAA 409 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||