These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTCGACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCACCTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGCGGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGGCGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGAGGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCGGGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCAGGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCAGCTCTAC] [+] EMBL AK062330 [CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTCGACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCACCTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGCGGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGGCGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGAGGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCGGGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCAGGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCAGCTCTAC] consensusID : consensus_3914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 367 fasta sequence [GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTANTCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTTTCGANCG] [+] EMBL AA754525 [GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTANTCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTTTCGANCG] [+] EMBL AA753051 [GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTANTCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTTTCGANCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3914#0 CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTC 60 consensus_3914#1 ---------GANTCCNCAT-AGCTAAAGCAAGTGCATGGAGGCCCN----CGACAANANC 46 * * * * * * *** * * *** * * * * consensus_3914#0 GACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCAC 120 consensus_3914#1 NACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCAC 106 ***** ****** * ****************** ****** ***** ********** consensus_3914#0 CTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCT 180 consensus_3914#1 ATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCT 166 *********************************************************** consensus_3914#0 CGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGC 240 consensus_3914#1 CGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGC 226 ***************************************************** * *** consensus_3914#0 GGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGG 300 consensus_3914#1 GGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGA-CGCGCCAGANCGCCG 285 ************ ** **************************** **** * * * * consensus_3914#0 CGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGA 360 consensus_3914#1 CCGGGTAGCTCCTANTCCTAGCTA-------GCNATTGTTCGCCGCCGCCNGCCGGCGGN 338 * ** * * * *** * ** * * * * * *** consensus_3914#0 GGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGA 420 consensus_3914#1 AGTCTCAGTGTATTCTTTGCTTTCGANCG------------------------------- 367 * * * * ** * ** * * consensus_3914#0 GTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCG 480 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 GGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCA 540 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 GGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCA 600 consensus_3914#1 ------------------------------------------------------------ consensus_3914#0 GCTCTAC 607 consensus_3914#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||