cluster # 3918

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Oryza sativa
cluster # 3918 cluster # 3918 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3918#0 length = 850 sequences # 2

consensus_3918#1 length = 349 sequences # 1

consensusID : consensus_3918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 850
fasta sequence

                              [TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGGTTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTTGAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCCGTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGCGGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCACCACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAGTAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATACAGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGATTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGATTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTATATTCTCTTCA]

[+] EMBL AK107987             [TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGGTTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTTGAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCCGTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGCGGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCACCACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAGTAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATACAGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGATTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGATTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTATATTCTCTTCA]
[-] EMBL CB668237             [                                                                                                                                                                      CCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGGTTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTTGAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCCGTCGAAGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGCGGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCACCACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTCGCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAGTAGCGATTAGCTATAGCTAGCAGAGAC                                                                                                                                                                                                                               ]




>consensus_3918#0
TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCG
AGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTT
TCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAG
AAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGG
TTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTT
GAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCC
GTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGC
GGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCAC
CACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTC
GCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAG
TAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATAC
AGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGA
TTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGA
TTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTAT
ATTCTCTTCA

consensusID : consensus_3918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCCGCGAACTGTCTCTGCTAGCTATATCTAAGCGCTACTGTACACGTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCCATGGCGGACGGAAGCTAGCTCTATCGATCAGGAGCTGACTTTGGTGTGGGGGCACGGGGATAAGGAGTACTG]

[+] EMBL CB668236             [AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCCGCGAACTGTCTCTGCTAGCTATATCTAAGCGCTACTGTACACGTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCCATGGCGGACGGAAGCTAGCTCTATCGATCAGGAGCTGACTTTGGTGTGGGGGCACGGGGATAAGGAGTACTG]




>consensus_3918#1
AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCGAGGTTAATCAGCTGCAACG
GCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTTTCGGTGGTTGGTGCTTCCG
CCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAGAAAGGGTGGCTGGCGGTGA
GGGTCGGGGTGGAGGGCCGCGAACTGTCTCTGCTAGCTATATCTAAGCGCTACTGTACAC
GTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCCATGGCGGACGGAAGCTAGCTCTA
TCGATCAGGAGCTGACTTTGGTGTGGGGGCACGGGGATAAGGAGTACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3918#0      TTCGAGATCGATCAGCTCCAGCTCGTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCG 60
consensus_3918#1      -------------------AGCCCCTGGAGTGTGCGTAGCTTGATTGCACTTGCGCAGCG 41
                                         *** * ***********************************

consensus_3918#0      AGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCGCGGAGGAGAGGACGGCGTCTGTT 120
consensus_3918#1      AGGTTAATCAGCTGCAACGGCGGCGAGGTCGTCGTCCCGGAGGAGAGGACGGCGTCTGTT 101
                      ************************************ ***********************

consensus_3918#0      TCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAG 180
consensus_3918#1      TCGGTGGTTGGTGCTTCCGCCATGCTGCAGGGGGAGGAGAAGAAGGCCGGGAAGGTGAAG 161
                      ************************************************************

consensus_3918#0      AAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCGCCGACGGCGGCGACGGCGGCGGG 240
consensus_3918#1      AAAGGGTGGCTGGCGGTGAGGGTCGGGGTGGAGGGCCGCGA-ACTGTCTCTGCTAGCTAT 220
                      ************************************  ***    * *   *   **   

consensus_3918#0      TTCCGGCGGTTCGTCATCCCGATCGCCTACCTCTACCACCCCTTGTTCCGCCGCCTGCTT 300
consensus_3918#1      ATCTAAGCGCTACTGTACACGTACGCGGGGCGTCCTCGCCCGTAGATCCACTCCCCC--- 277
                       **     * *  *   * **  ***    *     * *** * * *** *  **     

consensus_3918#0      GAGGCGGCGCGCGACGCCTACGGCTACGACTCGGCCGGCCCGCTCCGGCTCCCCTGCTCC 360
consensus_3918#1      ---ATGGCGGACGGAAGCTAGCTCTATCGATCAGG-AGCTGACTTTGGTGTGGGGGCAC- 332
                           ****  **    ***   ***    ** *   **   **  **       ** * 

consensus_3918#0      GTCGACGAGTTCCTCCGCCTCCGCTCGCTCGTGGAGCGGGAGACCCACGCGGCCGGCGGC 420
consensus_3918#1      GGGGATAAGGAGTACTG------------------------------------------- 349
                      *  **  **     * *                                           

consensus_3918#0      GGCGGCGGCGGCTCGTCGTCGCCGCACCGCGTCCACGCCGGCGGCGGATCGCACCACCAC 480
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      CACCACTACTCCTTCTCCCCGTGCACCCGCGCCAAAGTCAGCTCCTGATCGATCGAGCTC 540
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      GCTTCCGTGCGCCATGGCGGAGTCGATCTGCCGGCGAGGACGCCCCGCGTACGTGTACAG 600
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      TAGCGATTAGCTATAGCTAGCAGAGACAGTACACGACGAGAGGAGAGTGGAGTGGCATAC 660
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      AGTAGCTAGGTGATTAGTGATTTGCTCCGGGTTTTCGATCTCATGATTTTGGTCTCTTGA 720
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      TTTCCCCTTCTTCTTCTTGATCTTTTTGATCGATCTTGTATAGACGCATGTATGATAGGA 780
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      TTGACAGGTCGACTTATGTATGTATAATTATCAGTTGAACTCACAGTTCATAGCTATTAT 840
consensus_3918#1      ------------------------------------------------------------
                                                                                  

consensus_3918#0      ATTCTCTTCA 850
consensus_3918#1      ----------