These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 803 fasta sequence [CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGTTGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGGCGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCGGCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGGCGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCGTCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAGCAAATT] [+] EMBL AK111022 [CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGTTGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGGCGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCGGCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGGCGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCGTCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAGCAAATT] consensusID : consensus_392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [GGTGTAGAGGCCGGGTTCTNTCCATTGTCTAATAAAGTTTTTGTGCATTAGTTATTGATGTAGCCTGGTATGTCTGATGCATGACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCATAGTGGTACTTTGTTTGAACTTTCCGAACATGATGTAGAATATCTTAGAGTATATTATTAAGTGCTAAATTGTCTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAAAAAAAA] [-] EMBL CA760214 [GGTGTAGAGGCCGGGTTCTNTCCATTGTCTAATAAAGTTTTTGTGCATTAGTTATTGATGTAGCCTGGTATGTCTGATGCATGACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCATAGTGGTACTTTGTTTGAACTTTCCGAACATGATGTAGAATATCTTAGAGTATATTATTAAGTGCTAAATTGTCTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTCATTCTTCTGTCATTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_392#0 CTCCCATTCGGAATATTGATTCTTGCCCTCTCGCCCGCCTTCCTGGTGCTTCTTGGGAGT 60 consensus_392#1 ------------------------------------------------------------ consensus_392#0 TGGGAGGGAGGGAGGGGATGGACTGGCGGCCGGACGGCGCGGCGCCGCCGGTTCCGGTGG 120 consensus_392#1 -----------------------------------GGTGTAGAG--GCCGGGTTCTNTC- 22 ** * * * ***** * * * consensus_392#0 CGGCGGCGCCCGTCGTACCTGTGGATTTCACGGTGGTCAAGAGGCGGCTCGGTGGCGGCG 180 consensus_392#1 CATTGTCTAATAAAGTTTTTGTGCATT----AGTTATT--GATGTAGCCTGGTA-TGTCT 75 * * * ** **** *** ** * ** * ** *** * * consensus_392#0 GCGACATGGAGGTGCGCGACGCGTCGGGCGGCCTCGCGTTCCGGTTCGTGGCGGCGGCGG 240 consensus_392#1 GATGCAT---GACAAATATTCTTTTAAGTTAATGTGCATGTTTCTTCATAGTGGTACT-- 130 * *** * * * ** * *** * * ** consensus_392#0 CGGCGGGCGGTGGCGGGGGCGGGGGCAGGGCGCTGCTCGACGCCGCCGGTGGTGTTCTCG 300 consensus_392#1 TTGTTTGAACTTTCCGAACATGATGTAGAATAT--CTTAGAGTATATTATTAAGTGCTAA 188 * * * * * * * ** ** * * ** ** consensus_392#0 TCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATA 360 consensus_392#1 --ATTGT-----CTTTCCAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATA 241 * ** * ****************************************** consensus_392#0 AAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATG 420 consensus_392#1 AAGACATAATTTACACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATG 301 ************************************************************ consensus_392#0 TATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAA 480 consensus_392#1 TATTCATGCCACCAAGAAGCAATTTTCAAGATACGAAAGCAAGCTACAGGCTCATAGGAA 361 ************************************************************ consensus_392#0 ATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATC 540 consensus_392#1 ATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGACAAATC 421 ************************************************************ consensus_392#0 TCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACC 600 consensus_392#1 TCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACC 481 ************************************************************ consensus_392#0 CAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGAC 660 consensus_392#1 CAGGAAATGATACACTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGAC 541 ************************************************************ consensus_392#0 ACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATA 720 consensus_392#1 ACACAATCGGAATGCCTTTTTGAGGAAATGATAACTTCCTGCCAGCATAAATCCTGTATA 601 ************************************************************ consensus_392#0 TATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTC 780 consensus_392#1 TATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGATGCCTC 661 ************************************************************ consensus_392#0 ATTCTTCTGTCATTCAGCAAATT 803 consensus_392#1 ATTCTTCTGTCATTCAAAAAAAA 684 **************** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||