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Oryza sativa
cluster # 3928 cluster # 3928       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3928#0 length = 1238 sequences # 2  
consensus_3928#1 length = 810 sequences # 1  

consensusID : consensus_3928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1238
fasta sequence
                              [TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA]

[+] EMBL AK102668             [TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGG                              ]
[-] EMBL CB668517             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGGCCTCGGAGGAGGTCAGGAGGGAGCTCGCCGCGCTCCACCCAGACGACGGCGAGGTCGTGGTCCACACCCGCGGCGCGTGGAGGATGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA]


>consensus_3928#0 TCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAG ATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTT TGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGC GGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGC GGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGT CATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGC CTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGG CGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCT CCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTG CCTCCTGGGCGCCATCTCCGGCGACACGCTCTACGTCGCCAACGCCGGCGACTCCCGCGC TGTCCTCGGCCGCCGCGCGGCGGCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCA CAACGTGGCCTCGGAGGAGGTCCGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGA GGTCGTGGTCCACGCCCGCGGCGCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGC CATCGGCGACGTGTACCTCAAGACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTT ATGCAGCGCCGCCGCCGCCGTCGAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCAT CCACGCCCGGAAGCTCAAGGCGGGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCT ATGGGAGCACCTCTCCGACGAGGCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAG AGGCGTGGCGGCGAGGCTGGTGCAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGT GAGGCGCGGCGACCTGCGGCGGATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACAT CACCGCCGTCGTCGTCTTCCTCGACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCG TGGCAGGGTCGTCGACTCCAGCAGCAGCAGAAGCGGCA



consensusID : consensus_3928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 810
fasta sequence
                              [CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCCACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATGAAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGG]

[+] EMBL CB668518             [CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCCACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATGAAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAACATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAAGAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAGTGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAGCTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCGCAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTCGTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTATTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCGCGGCCGCCTCGGGCTCCTGCTGCCTCCTGG]


>consensus_3928#1 CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCC ACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATG AAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAA CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA TTCCCTCTCATCCATGGTGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGTGGTT TGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCAAAAATTGATGAG CAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATCCGGAAGGCGTTCC TGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCGAACATGTCCCGCG CGGCCGCCTCGGGCTCCTGCTGCCTCCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3928#0      ------------------------------------------------------------
consensus_3928#1      CCTTTTTTTTTTTAAGATAAGACCGAGGAACACCGTGTTGGACTTATTGGCAACAAGTCC 60
                                                                                  

consensus_3928#0      ------------------------------------------------------------
consensus_3928#1      ACAAAGTCAAAAGTCAAAGCTCATCCTCCCCATGCTGTTGCAGTCTTTGCCACATATATG 120
                                                                                  

consensus_3928#0      -----------------------------------TCGCCGGAGAAGAAGACATCGCCAA 25
consensus_3928#1      AAGCCAAGCAGGTCAGTCACGGGCTTCACGTCGCCTCGCCGGAGAAGAAGACATCGCCAA 180
                                                         *************************

consensus_3928#0      CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA 85
consensus_3928#1      CATATACCCCCCCTCCCTACCTAGACTCAGATCAGATCACCTGCCCATCGACGAGCACAA 240
                      ************************************************************

consensus_3928#0      GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG 145
consensus_3928#1      GAGCGATCCATTCCTGGTTTGAATCGAGCTTGGTTTGTTTGGTTGGTTGGTTTCTTGGAG 300
                      ************************************************************

consensus_3928#0      TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG 205
consensus_3928#1      TGGATGATGGCGAGGTGGTGCGTGGGGTGGCCGGCGGCGGCGAGGGGTGGTCGGGATGAG 360
                      ************************************************************

consensus_3928#0      CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG 265
consensus_3928#1      CTGACGTGGCAGGCGGAGCTGACGGCGCACGCGGCGGGGGAGTTCTCCATGGCGGCGGCG 420
                      ************************************************************

consensus_3928#0      CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC 325
consensus_3928#1      CAGGCCAACGCGGTGATGGAGGACCAGGCGCAGGTCATGGCGTCGCCCGGCGCCACGCTC 480
                      ************************************************************

consensus_3928#0      GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA 385
consensus_3928#1      GTCGGCGTCTATGATGGCCATGGCGGCCCCGACGCCTCCCGCTTCCTCCGCTCCCGCCTA 540
                      ************************************************************

consensus_3928#0      TTCCCTCTCATCCATGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGACGTGATC 445
consensus_3928#1      TTCCCTCTCATCCATGG---TGCGTGCGCTCGCCGGCGCGCGGCGGAGCTCGATCTTGT- 596
                      ****************     ***   *  *** *  ****** ***   ***  *  * 

consensus_3928#0      CGGAAGGCGTTCCTGGCGGCCGACGAGGAGTACCTCCAGCTGCTGCGGTGGTCGCTGCCG 505
consensus_3928#1      -----GGTTTGATTTGAATACGTTGGCAAGAATCTTTAGCTGATTTTGTTGGCGCCA--A 649
                           **  *   * *    **  *   ** * **  ***** *   ** * ***     

consensus_3928#0      AACATGTCCCGCGCGGC-CGCCTCGGGCTCCTGCTGCCTCCTGGGCGCCATCTCCGGCGA 564
consensus_3928#1      AAATTGATGAGCAGAGTTCGCGGCGGAGCGCGGCGGCGCGGTGGACGCCGAC----GTGA 705
                      **  **    **   *  ***  ***    * ** **    *** ****  *    * **

consensus_3928#0      CACGCTCTACGTCGCCAACG-CCGGCGACTCCCGCGCTGTCCTCGGCCGCCGCG-CGGCG 622
consensus_3928#1      TCCGGAAGGCGTTCCTGGCGGCCGACGA-----GGAGTACCTCCAGCTGCTGCGGTGGTC 760
                        **     ***  *   ** *** ***     *   *  *  * ** ** ***  **  

consensus_3928#0      GCCGGCCAGACCGTCGCCGAGCGGCTCTCCACCGAGCACAACGTGGCCTCGGAGGAGGTC 682
consensus_3928#1      GCTGCCGAACATGTC-CCGCGCGGCCGCCT--CGGGCTCC-TGCTGCCTCCTGG------ 810
                      ** * * *    *** *** *****   *   ** ** *   *  *****   *      

consensus_3928#0      CGGAGGGAGCTCGCCGCGCTCCACCCCGACGACGGCGAGGTCGTGGTCCACGCCCGCGGC 742
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      GCGTGGAGGGTGAAGGGGATCATCCAGGTGGCGCGCGCCATCGGCGACGTGTACCTCAAG 802
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      ACGCCGGAGTTCAAGCGCGACCCGGCGGTGCAGCGGTTATGCAGCGCCGCCGCCGCCGTC 862
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      GAGCTGGCGCGGCCGGTGGTCACCGCCGAGCCGTCCATCCACGCCCGGAAGCTCAAGGCG 922
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      GGCGTCGACCTGTTCGTCGTGTTCGCCTCCGACGGCCTATGGGAGCACCTCTCCGACGAG 982
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      GCGGCGGTGCAGCTGGTGTCCAAGAGCTCGACGAGGAGAGGCGTGGCGGCGAGGCTGGTG 1042
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      CAGGCAGCGCTCGGGGAGGCGGCGAGGAAGCGGGAGGTGAGGCGCGGCGACCTGCGGCGG 1102
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      ATCGAGCGAGGGGTGAGGCGCCACTTCCACGACGACATCACCGCCGTCGTCGTCTTCCTC 1162
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      GACCTCGACGACGACGGCGGCCGCCGCGCGCGCCGCCGTGGCAGGGTCGTCGACTCCAGC 1222
consensus_3928#1      ------------------------------------------------------------
                                                                                  

consensus_3928#0      AGCAGCAGAAGCGGCA 1238
consensus_3928#1      ----------------
                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)