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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1164 fasta sequence
[ACGTAGCGCGCGGCACACGGATCAACGTGAACGTGAACGAGACCGAGACCTCGCCGCCGGCGACCAAAAATTTGTACTAACTGTGATGGCCACGGTGGAGGTGTTGACGTCGGAGGTGGTCGCCCCGGCGGAGGAGACGCCGGCGGGCGCCGTGTGGCTGTCCAACCTCGACCTCGCCGCGCGGCGCGGGTACACGCCGACGGTGTACTTCTACCGGCGGAACGGCGACGACGAGGCGGCGTTCTTCGCGGCGGACGCCGTGAGGGACGGCCTCGCCAGGGCTCTGGTGCCGTTCTACCCGCTCGCCGGCCGGCTCGGGCTCGCCGGCGGCGGCGAAGACGGGCGCGTCCAGATCGACTGCACCGGCGAGGGCGCGGTGTTCGTCACGGCGAGGTCCGGGCACTACGCGCTGGACGACCTGATGAACGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCCCGACGCCGCCGCCGAACCCGCCGTGCGCGCTGCTGCTGGTGCAGGTCACGCACCTGCGGTGCGGCGGCGTCGTGCTCGGCATGGCGCTGCACCACTCGGTGGTGGACGCGAGGAGCGCGGCGCACTTCGCGGAGACGTGGGCGAGCATCGTGCGCGGCGCGCCCGCCGGGGACGCGCCCGTGCCGCCGTGCTTCGACCACAAGCTGCTCGCCGCGCGGCCGGCCCGCGCGGTGCTGTACGACCACCCGGAGTACAAGCCCGAGCCGGCGCCGGCGCCGGCGCACGCCGCCACGGCGTCCACGTACGCGAGCGCCATCATCACGCTGACGAAGCAGCAGGTGGGCGCGCTGAAGGCGGCGTGCGCGGGGGCGTCCACGTTCCGCGCGGTGGTGGCGCTGGTGTGGCAGTGCGCGTGCCGCGCGCGTTCGCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGAAGATTGGGTCGACATACAACTTAATATTCAACAAAGGGATAATTGCATCTATGCCCCTACTTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCTATTTTTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGTTTTATGTTAAAGAAATACAAAAGAAGATAAAGAAAAG]
[+] EMBL AK109116 [ACGTAGCGCGCGGCACACGGATCAACGTGAACGTGAACGAGACCGAGACCTCGCCGCCGGCGACCAAAAATTTGTACTAACTGTGATGGCCACGGTGGAGGTGTTGACGTCGGAGGTGGTCGCCCCGGCGGAGGAGACGCCGGCGGGCGCCGTGTGGCTGTCCAACCTCGACCTCGCCGCGCGGCGCGGGTACACGCCGACGGTGTACTTCTACCGGCGGAACGGCGACGACGAGGCGGCGTTCTTCGCGGCGGACGCCGTGAGGGACGGCCTCGCCAGGGCTCTGGTGCCGTTCTACCCGCTCGCCGGCCGGCTCGGGCTCGCCGGCGGCGGCGAAGACGGGCGCGTCCAGATCGACTGCACCGGCGAGGGCGCGGTGTTCGTCACGGCGAGGTCCGGGCACTACGCGCTGGACGACCTGATGAACGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCCCGACGCCGCCGCCGAACCCGCCGTGCGCGCTGCTGCTGGTGCAGGTCACGCACCTGCGGTGCGGCGGCGTCGTGCTCGGCATGGCGCTGCACCACTCGGTGGTGGACGCGAGGAGCGCGGCGCACTTCGCGGAGACGTGGGCGAGCATCGTGCGCGGCGCGCCCGCCGGGGACGCGCCCGTGCCGCCGTGCTTCGACCACAAGCTGCTCGCCGCGCGGCCGGCCCGCGCGGTGCTGTACGACCACCCGGAGTACAAGCCCGAGCCGGCGCCGGCGCCGGCGCACGCCGCCACGGCGTCCACGTACGCGAGCGCCATCATCACGCTGACGAAGCAGCAGGTGGGCGCGCTGAAGGCGGCGTGCGCGGGGGCGTCCACGTTCCGCGCGGTGGTGGCGCTGGTGTGGCAGTGCGCGTGCCGCGCGCGTTCGCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGAAGATTGGGTCGACATACAACTTAATATTCAACAAAGGGATAATTGCATCTATGCCCCTACTTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCTATTTTTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGTTTTATGTTAAAGAAATACAAAAGAAGATAAAGAAAAG]
consensusID : consensus_393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[AGCTAGCTCGTGAAGAAGCCATGGCGACGGTGGACGTGCTGACGTCGGAGGTGGTCGTCCCCGCCGGCGAGACGCCGGGNCGACCGTCTGGCTGTCCAACCTCGACCTCGCCGCGCGCCGCGCTGACACGCCGACGGTGTTCTTCTACCGCCACAACGGCGAGCCGGGGTTCTTCGCGGCCGACGCCATGAGGGACAGCCTCGCCAGGGCGCTCGTGGCGTTCTACCCGGTCGCCGGCCGCCTCGGGCTCGACGGCGACGGCCGCGTCCAGGTCGACTGCACCGGCGAGGGCGTGGTGTTCGCCACGGCGAGGTCCGGGCACTACGCGCTCGACGACCTGATGGGCGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCGCGGCGCCGGCGGNGCGAGCTGCTGCCCGCGCGGCGGCGCACTTGTTGCTGGTGCAGGTCACGTACCTGNGGTGCGGCGGCGTCGTGCTCGGCATAGCGCTGCACCACTCNATCGCCGAAGGGCGGAACGCGGCGCACTTCGTGGAGACGT]
[+] EMBL C97336 [AGCTAGCTCGTGAAGAAGCCATGGCGACGGTGGACGTGCTGACGTCGGAGGTGGTCGTCCCCGCCGGCGAGACGCCGGGNCGACCGTCTGGCTGTCCAACCTCGACCTCGCCGCGCGCCGCGCTGACACGCCGACGGTGTTCTTCTACCGCCACAACGGCGAGCCGGGGTTCTTCGCGGCCGACGCCATGAGGGACAGCCTCGCCAGGGCGCTCGTGGCGTTCTACCCGGTCGCCGGCCGCCTCGGGCTCGACGGCGACGGCCGCGTCCAGGTCGACTGCACCGGCGAGGGCGTGGTGTTCGCCACGGCGAGGTCCGGGCACTACGCGCTCGACGACCTGATGGGCGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCGCGGCGCCGGCGGNGCGAGCTGCTGCCCGCGCGGCGGCGCACTTGTTGCTGGTGCAGGTCACGTACCTGNGGTGCGGCGGCGTCGTGCTCGGCATAGCGCTGCACCACTCNATCGCCGAAGGGCGGAACGCGGCGCACTTCGTGGAGACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_393#0 ACGTAGCGCGCGGCACACGGATCAACGTGAACGTGAACGAGACCGAGACCTCGCCGCCGG 60
consensus_393#1 ------------------------------------------------------------
consensus_393#0 CGACCAAAAATTTGTACTAACTGTGATGGCCACGGTGGAGGTGTTGACGTCGGAGGTGGT 120
consensus_393#1 ----AGCTAGCTCGTGAAGAA-GCCATGGCGACGGTGGACGTGCTGACGTCGGAGGTGGT 55
* * ** * * ***** ******** *** ****************
consensus_393#0 CGCCCCGGCGGAGGAGACGCCGGCGGGCGCCGTGTGGCTGTCCAACCTCGACCTCGCCGC 180
consensus_393#1 CGTCCCCGCCGGCGAGACGCCGG-GNCGACCGTCTGGCTGTCCAACCTCGACCTCGCCGC 114
** *** ** * ********** * **** **************************
consensus_393#0 GCGGCGCGGGTACACGCCGACGGTGTACTTCTACCGGCGGAACGGCGACGACGAGGCGGC 240
consensus_393#1 GCGCCGCGCTGACACGCCGACGGTGTTCTTCTACCGCCACAACGGCGA------GCCGGG 168
*** **** *************** ********* * ******** * ***
consensus_393#0 GTTCTTCGCGGCGGACGCCGTGAGGGACGGCCTCGCCAGGGCTCTGGTGCCGTTCTACCC 300
consensus_393#1 GTTCTTCGCGGCCGACGCCATGAGGGACAGCCTCGCCAGGGCGCTCGTGGCGTTCTACCC 228
************ ****** ******** ************* ** *** **********
consensus_393#0 GCTCGCCGGCCGGCTCGGGCTCGCCGGCGGCGGCGAAGACGGGCGCGTCCAGATCGACTG 360
consensus_393#1 GGTCGCCGGCCGCCTCGGGCTCGACGGCGACGGC---------CGCGTCCAGGTCGACTG 279
* ********** ********** ***** **** ********* *******
consensus_393#0 CACCGGCGAGGGCGCGGTGTTCGTCACGGCGAGGTCCGGGCACTACGCGCTGGACGACCT 420
consensus_393#1 CACCGGCGAGGGCGTGGTGTTCGCCACGGCGAGGTCCGGGCACTACGCGCTCGACGACCT 339
************** ******** *************************** ********
consensus_393#0 GATGAACGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCCCGACGCCGCC 480
consensus_393#1 GATGGGCGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCGCGGCGCCGGC 399
**** ******************************************* ** ***** *
consensus_393#0 GCCG-AACCCGCCGTGCGCGC-----------TGCTGCTGGTGCAGGTCACGCACCTGCG 528
consensus_393#1 GGNGCGAGCTGCTGCCCGCGCGGCGGCGCACTTGTTGCTGGTGCAGGTCACGTACCTGNG 459
* * * * ** * ***** ** ***************** ***** *
consensus_393#0 GTGCGGCGGCGTCGTGCTCGGCATGGCGCTGCACCACTCGGTGGTGGACGCGAGGAGCGC 588
consensus_393#1 GTGCGGCGGCGTCGTGCTCGGCATAGCGCTGCACCACTCNATCGCCGAAGGGCGGAACGC 519
************************ ************** * * ** * * *** ***
consensus_393#0 GGCGCACTTCGCGGAGACGTGGGCGAGCATCGTGCGCGGCGCGCCCGCCGGGGACGCGCC 648
consensus_393#1 GGCGCACTTCGTGGAGACGT---------------------------------------- 539
*********** ********
consensus_393#0 CGTGCCGCCGTGCTTCGACCACAAGCTGCTCGCCGCGCGGCCGGCCCGCGCGGTGCTGTA 708
consensus_393#1 ------------------------------------------------------------
consensus_393#0 CGACCACCCGGAGTACAAGCCCGAGCCGGCGCCGGCGCCGGCGCACGCCGCCACGGCGTC 768
consensus_393#1 ------------------------------------------------------------
consensus_393#0 CACGTACGCGAGCGCCATCATCACGCTGACGAAGCAGCAGGTGGGCGCGCTGAAGGCGGC 828
consensus_393#1 ------------------------------------------------------------
consensus_393#0 GTGCGCGGGGGCGTCCACGTTCCGCGCGGTGGTGGCGCTGGTGTGGCAGTGCGCGTGCCG 888
consensus_393#1 ------------------------------------------------------------
consensus_393#0 CGCGCGTTCGCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGA 948
consensus_393#1 ------------------------------------------------------------
consensus_393#0 AGATTGGGTCGACATACAACTTAATATTCAACAAAGGGATAATTGCATCTATGCCCCTAC 1008
consensus_393#1 ------------------------------------------------------------
consensus_393#0 TTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCTATTT 1068
consensus_393#1 ------------------------------------------------------------
consensus_393#0 TTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGTT 1128
consensus_393#1 ------------------------------------------------------------
consensus_393#0 TTATGTTAAAGAAATACAAAAGAAGATAAAGAAAAG 1164
consensus_393#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||