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Oryza sativa
cluster # 3930 cluster # 3930       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3930#0 length = 2377 sequences # 3  

consensusID : consensus_3930#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2377
fasta sequence
                              [CCGGATGGGGCGAGGGAGAAAGGACAAAAAAGAAAAAAGAAAAGGAAAAAAAAAGAAAAGATCAAATCAAATCAAATCCCCCGTCGAGGCCAAACCCTAATCGCCGCCTGGCGATGGATGGCCGACGGCGGCGCAGCGGGAGGCCGGATGTTTCCTACGGCAATTCGGATGGAATCGCCCACAACCGATCCGTGATTTTGGGCACCATCCACGGCTACTACAAGGAGGCGCTCGCCGTGCTGCCGCTCGACGACTTGCCGGAGCTTGCCCCGCGCCTCGTTGGCGCCGGCGTCTGCTTCGGCTTCGGCGACCCTACCACCAACATCATCGCCAACACCCTCTCCTCCTTCCTCCCCGACAAGCCTGATCCCGATCACCGGGCCAAGAAGCACAAGCGCAAGGCAAGCATCAAGACGCCATCGGCAGCAGCGAGGTCGGATGCCGCCGGCGACGCCCCCTCCCCTCCGCCGGAGACACGAACCATCGCCGAGCGATCGCTGGAGGGCCTCATCACCTTCCTCACATCTTACTTCCGCTACCTCCCCACCTGGGATGCGCTCCGCTACCTGTGCCTCGCCAACGCCGACCTCCTCGTCGCCGTCCGCCTCATCGAGCTTGATCGCTGCTACAACACCAAGGATGAACGGTTCCACATCTCCTCCTACGCTGCCAGGGCTGCCCTTACATGCGCAGCATCATCGGCGAGGCAGCCTGACGTCGACGGCTTCATTGCTGGTTCGTTTTCGCTGGCGTCTCATCTTGAATTCGTCACCCAGACCGTGCTAGCAGATCGCAGCTATGTATTGTCTGTTGAGAAGATCTTGTTGCTGTCTGGAATGCTGAAGAAGAAGCCGCGCATGCTTGACAAGTCTGACAATCCAATGATTTTTGCTGATGAACGGCGGCTTCGTAACTGCCATACCGATGCTAATGCTAGTGGTGATGCTAATTGTGAGAAGGTGCCAGGTGGTTTGACAATATCACTTCGGGCTGTTCTACTTGACAAGATTCATGCCAAGTACCTCAAGGCAATCTCTCGATTACCTATGCAAGATGTTCGGGCTCGTTACCACTTACCACCGTGCCCTTGTCAACGGTGGTTACTGCTATGGCCCATTCAGTTGTGTGACCAACATCATCGTCAACACTCTCTGGTATGACTCTACTTTCCCTGCTATGGAGAAACTTGAGGTGGACATGATCTGCACCTCCACCTTTGTTCGTGTGGAGTCCCGGTCCCTTCGTGGCCTTATCAAGCTATTGCTTACATGCATTCCTGAGATTTCTGAGCATGATGCCATGATATATCTGCTAAAGAATAATCTGAAAGTTCGCAAAGCAATTGAAATGGCAGGAGCGGAAGGGTGGAAATCCAGCTGGGATGTCAGTGCCTACAAGGCTGCAGCGGATGCATCGTTTCATCCTGAGCCCGAAGCTTATGTACAGTTTTCCACTCAATCTCTACCTAAGGTGCAGGCTGCCGTTAAATCACTATTGCGTGCTTCTACCCCACTTTCCTCGAATGATGTTCTTCAGCTAGCTACGTTGTTGCCATCTTCAAACTGCATCTCTGCTAAATCTTTGGAGACAATTGTTGATCTGTCTACAGATGCATTGGATATGTTTATAGCGTTCAAGGAAAAATTTGTCACTCAACAGGGTTTTTTTCATAGAAAGATTGAAGCTGCACTAAGGAAAAGGGGATATCTATATGATCTTCAAGTAATCTGTGTTGCAAATGAGCGTGTGGGCAGCCAGATGAACTTCTTGGACTTCAAATGTCCATATTCACATGTAAACTTTTTGGCAAGACCAAAAGTTGGAAGTGGACTTAAGTTATTCTTTGCTGAATTCAGTAATGATGATGATGATGTATCCTTTTGCTGTACCGTCTCAAGAAAATCAAAACACGCTCGTTGTTGTTATTGTGAATATGAAGGGACCAGGATTATGCATCCTGCGCATCCGATTGAAAATTATTGTGGTGGCGACATGGACTTCATAGAAATGGCGCATGGCACTCATAAGCTGACCAATGCAAGAATCATTAGTTGTGGGAAGTGCGCAGGCAATAGAGTAGGCATGTGTGGGGACGATTATATCTATTTCGATCCTACCCGAGATGCTAAGTTCGCCCAATGCATGAACCGGACTGCTTCAAGGGCGAATATAAGCTGGAGTGACATTTTAAAGGTGAATACAAGCTAGAGTGACATTGAGAGGCATGAACCAGAACTGCTTTATGGGTGAATGCAAGCTAGAGTGATATTGATAGTATAGGTGATGTGTATTCCGATGTCTTATTTTAATGAAGATATCTTTTTTTATTATAATTTTATGTGGACTTGATGGTTATTTATA--ATACTGCAGTGATGGC]

[+] EMBL AK100419             [CCGGATGGGGCGAGGGAGAAAGGACAAAAAAGAAAAAAGAAAAGGAAAAAAAAAGAAAAGATCAAATCAAATCAAATCCCCCGTCGAGGCCAAACCCTAATCGCCGCCTGGCGATGGATGGCCGACGGCGGCGCAGCGGGAGGCCGGATGTTTCCTACGGCAATTCGGATGGAATCGCCCACAACCGATCCGTGATTTTGGGCACCATCCACGGCTACTACAAGGAGGCGCTCGCCGTGCTGCCGCTCGACGACTTGCCGGAGCTTGCCCCGCGCCTCGTTGGCGCCGGCGTCTGCTTCGGCTTCGGCGACCCTACCACCAACATCATCGCCAACACCCTCTCCTCCTTCCTCCCCGACAAGCCTGATCCCGATCACCGGGCCAAGAAGCACAAGCGCAAGGCAAGCATCAAGACGCCATCGGCAGCAGCGAGGTCGGATGCCGCCGGCGACGCCCCCTCCCCTCCGCCGGAGACACGAACCATCGCCGAGCGATCGCTGGAGGGCCTCATCACCTTCCTCACATCTTACTTCCGCTACCTCCCCACCTGGGATGCGCTCCGCTACCTGTGCCTCGCCAACGCCGACCTCCTCGTCGCCGTCCGCCTCATCGAGCTTGATCGCTGCTACAACACCAAGGATGAACGGTTCCACATCTCCTCCTACGCTGCCAGGGCTGCCCTTACATGCGCAGCATCATCGGCGAGGCAGCCTGACGTCGACGGCTTCATTGCTGGTTCGTTTTCGCTGGCGTCTCATCTTGAATTCGTCACCCAGACCGTGCTAGCAGATCGCAGCTATGTATTGTCTGTTGAGAAGATCTTGTTGCTGTCTGGAATGCTGAAGAAGAAGCCGCGCATGCTTGACAAGTCTGACAATCCAATGATTTTTGCTGATGAACGGCGGCTTCGTAACTGCCATACCGATGCTAATGCTAGTGGTGATGCTAATTGTGAGAAGGTGCCAGGTGGTTTGACAATATCACTTCGGGCTGTTCTACTTGACAAGATTCATGCCAAGTACCTCAAGGCAATCTCTCGATTACCTATGCAAGATGTTCGGGCTCGTTACCACTTACCACCGTGCCCTTGTCAACGGTGGTTACTGCTATGGCCCATTCAGTTGTGTGACCAACATCATCGTCAACACTCTCTGGTATGACTCTACTTTCCCTGCTATGGAGAAACTTGAGGTGGACATGATCTGCACCTCCACCTTTGTTCGTGTGGAGTCCCGGTCCCTTCGTGGCCTTATCAAGCTATTGCTTACATGCATTCCTGAGATTTCTGAGCATGATGCCATGATATATCTGCTAAAGAATAATCTGAAAGTTCGCAAAGCAATTGAAATGGCAGGAGCGGAAGGGTGGAAATCCAGCTGGGATGTCAGTGCCTACAAGGCTGCAGCGGATGCATCGTTTCATCCTGAGCCCGAAGCTTATGTACAGTTTTCCACTCAATCTCTACCTAAGGTGCAGGCTGCCGTTAAATCACTATTGCGTGCTTCTACCCCACTTTCCTCGAATGATGTTCTTCAGCTAGCTACGTTGTTGCCATCTTCAAACTGCATCTCTGCTAAATCTTTGGAGACAATTGTTGATCTGTCTACAGATGCATTGGATATGTTTATAGCGTTCAAGGAAAAATTTGTCACTCAACAGGGTTTTTTTCATAGAAAGATTGAAGCTGCACTAAGGAAAAGGGGATATCTATATGATCTTCAAGTAATCTGTGTTGCAAATGAGCGTGTGGGCAGCCAGATGAACTTCTTGGACTTCAAATGTCCATATTCACATGTAAACTTTTTGGCAAGACCAAAAGTTGGAAGTGGACTTAAGTTATTCTTTGCTGAATTCAGTAATGATGATGATGATGTATCCTTTTGCTGTACCGTCTCAAGAAAATCAAAACACGCTCGTTGTTGTTATTGTGAATATGAAGGGACCAGGATTATGCATCCTGCGCATCCGATTGAAAATTATTGTGGTGGCGACATGGACTTCATAGAAATGGCGCATGGCACTCATAAGCTGACCAATGCAAGAATCATTAGTTGTGGGAAGTGCGCAGGCAATAGAGTAGGCATGTGTGGGGACGATTATATCTATTTCGATCCTACCCGAGATGCTAAGTTCGCCCAATGCATGAACCGGACTGCTTCAAGGGCGAATATAAGCTGGAGTGACATTTTAAAGGTGAATACAAGCTAGAGTGACATTGAGAGGCATGAACCAGAACTGCTTTATGGGTGAATGCAAGCTAGAGTGATATTGATAGTATAGGTGATGTGTATTCCGATGTCTTATTTTAATGAAGATATCTTTTTTTATTATAATTTTATGTGGACTTGATGGTTATTTATA  ATACTGCAGTGATG  ]
[+] EMBL CB642507             [                                                                               CCCGTCGAGGCCAAACCCTAATCGCCGCCTGGCGATGGATGGCCGACGGCGGCGCAGCGGGAGGCCGGATGTTTCCTACGGCAATTCGGATGGAATCGCCCACAACCGATCCGTGATTTTGGGCACCATCCACGGCTACTACAAGGAGGCGCTCGCCGTGCTGCCGCTCGACGACTTGCCGGAGCTTGCCCCGCGCCTCGTTGGCGCCGGCGTCTGCTTCGGCTTCGGCGACCCTACCACCAACATCATCGCCAACACCCTCTCCTCCTTCCTCCCCGACAAGCCTGATCCCGATCACCGGGCCAAGAAGCACAAGCGCAAGGCAAGCATCAAGACGCCATCGGCAGCAGCGAGGTCGGATGCCGCCGGCGACGCCCCCTCCCCTCCGCCGGAGACACGAACCATCGCCGAGCGATCGCTGGAGGGCCTCATCACCTTCCTCACATCTTACTTCCGCTACCTCCCCACCTGGGATGCGCTCCGCTACCTGTGCCTCGCCAACGCCGACCTCCTCGTCGCCGTCCGCCTCATCGAGCTTGATCGCTGCTACAACACCAAGGATGAACGGTTCCACATCTCCTCCTACGCTGCCAGGGCTGCCCTTACATGCGCAGCATCATCGGCGAGGCAGCCTGACGTCGACGGCTTCATTGCTGGTTCGTTTTCGCTGGCGTCTCATCTTGAATTCGTCACCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB642508             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TAGCGTTCAAGGAAAAATTTGTCACTCAACAGGGTTTTTTTCATAGAAAGATTGAAGCTGCACTAAGGAAAAGGGGATATCTATATGATCTTCAAGTAATCTGTGTTGCAAATGAGCGTGTGGGCAGCCAGATGAACTTCTTGGATTTCAAATGTCCATATTCACATGTAAACTTTTTGGCAAGACCAAAAGTTGGAAGTGGACTTAAGTTATTCTTTGCTGAATTCAGTAATGATGATGATGATGTATCCTTTTGCTGTACCGTCTCAAGAAAATCAAAACACGCTCGTTGTTGTTATTGTGAATATGAAGGGACCAGGATTATGCATCCTGCGCATCCGATTGAAAATTATTGTGGTGGCGACATGGACTTCATAGAAATGGCGCATGGCACTCATAAGCTGACCAATGCAAGAATCATTAGTTGTGGGAAGTGCGCAGGCAATAGAGTAGGCATGTGTGGGGACGATTATATCTATTTCGATCCTACCCGAGATGCTAAGTTCGCCCAATGCATGAACCGGACTGCTTCAAGGGCGAATATAAGCTGGAGTGCCATTTTAAAGGTGAATACAAGCTAGAGTGACATTGAGAGGCATGAACCAGAACTGCTTTATGGGTGAATGCAAGCTAGAGTGATATTGATAGTATAGGTGATGTGTATTCCGATGTCTTATTTTAATGAAGATATCTTTTTTTATTATAATTTTATGTGGACTTGATGGTTATTTATAATATACTGCAGTGATGGC]


>consensus_3930#0 CCGGATGGGGCGAGGGAGAAAGGACAAAAAAGAAAAAAGAAAAGGAAAAAAAAAGAAAAG ATCAAATCAAATCAAATCCCCCGTCGAGGCCAAACCCTAATCGCCGCCTGGCGATGGATG GCCGACGGCGGCGCAGCGGGAGGCCGGATGTTTCCTACGGCAATTCGGATGGAATCGCCC ACAACCGATCCGTGATTTTGGGCACCATCCACGGCTACTACAAGGAGGCGCTCGCCGTGC TGCCGCTCGACGACTTGCCGGAGCTTGCCCCGCGCCTCGTTGGCGCCGGCGTCTGCTTCG GCTTCGGCGACCCTACCACCAACATCATCGCCAACACCCTCTCCTCCTTCCTCCCCGACA AGCCTGATCCCGATCACCGGGCCAAGAAGCACAAGCGCAAGGCAAGCATCAAGACGCCAT CGGCAGCAGCGAGGTCGGATGCCGCCGGCGACGCCCCCTCCCCTCCGCCGGAGACACGAA CCATCGCCGAGCGATCGCTGGAGGGCCTCATCACCTTCCTCACATCTTACTTCCGCTACC TCCCCACCTGGGATGCGCTCCGCTACCTGTGCCTCGCCAACGCCGACCTCCTCGTCGCCG TCCGCCTCATCGAGCTTGATCGCTGCTACAACACCAAGGATGAACGGTTCCACATCTCCT CCTACGCTGCCAGGGCTGCCCTTACATGCGCAGCATCATCGGCGAGGCAGCCTGACGTCG ACGGCTTCATTGCTGGTTCGTTTTCGCTGGCGTCTCATCTTGAATTCGTCACCCAGACCG TGCTAGCAGATCGCAGCTATGTATTGTCTGTTGAGAAGATCTTGTTGCTGTCTGGAATGC TGAAGAAGAAGCCGCGCATGCTTGACAAGTCTGACAATCCAATGATTTTTGCTGATGAAC GGCGGCTTCGTAACTGCCATACCGATGCTAATGCTAGTGGTGATGCTAATTGTGAGAAGG TGCCAGGTGGTTTGACAATATCACTTCGGGCTGTTCTACTTGACAAGATTCATGCCAAGT ACCTCAAGGCAATCTCTCGATTACCTATGCAAGATGTTCGGGCTCGTTACCACTTACCAC CGTGCCCTTGTCAACGGTGGTTACTGCTATGGCCCATTCAGTTGTGTGACCAACATCATC GTCAACACTCTCTGGTATGACTCTACTTTCCCTGCTATGGAGAAACTTGAGGTGGACATG ATCTGCACCTCCACCTTTGTTCGTGTGGAGTCCCGGTCCCTTCGTGGCCTTATCAAGCTA TTGCTTACATGCATTCCTGAGATTTCTGAGCATGATGCCATGATATATCTGCTAAAGAAT AATCTGAAAGTTCGCAAAGCAATTGAAATGGCAGGAGCGGAAGGGTGGAAATCCAGCTGG GATGTCAGTGCCTACAAGGCTGCAGCGGATGCATCGTTTCATCCTGAGCCCGAAGCTTAT GTACAGTTTTCCACTCAATCTCTACCTAAGGTGCAGGCTGCCGTTAAATCACTATTGCGT GCTTCTACCCCACTTTCCTCGAATGATGTTCTTCAGCTAGCTACGTTGTTGCCATCTTCA AACTGCATCTCTGCTAAATCTTTGGAGACAATTGTTGATCTGTCTACAGATGCATTGGAT ATGTTTATAGCGTTCAAGGAAAAATTTGTCACTCAACAGGGTTTTTTTCATAGAAAGATT GAAGCTGCACTAAGGAAAAGGGGATATCTATATGATCTTCAAGTAATCTGTGTTGCAAAT GAGCGTGTGGGCAGCCAGATGAACTTCTTGGACTTCAAATGTCCATATTCACATGTAAAC TTTTTGGCAAGACCAAAAGTTGGAAGTGGACTTAAGTTATTCTTTGCTGAATTCAGTAAT GATGATGATGATGTATCCTTTTGCTGTACCGTCTCAAGAAAATCAAAACACGCTCGTTGT TGTTATTGTGAATATGAAGGGACCAGGATTATGCATCCTGCGCATCCGATTGAAAATTAT TGTGGTGGCGACATGGACTTCATAGAAATGGCGCATGGCACTCATAAGCTGACCAATGCA AGAATCATTAGTTGTGGGAAGTGCGCAGGCAATAGAGTAGGCATGTGTGGGGACGATTAT ATCTATTTCGATCCTACCCGAGATGCTAAGTTCGCCCAATGCATGAACCGGACTGCTTCA AGGGCGAATATAAGCTGGAGTGACATTTTAAAGGTGAATACAAGCTAGAGTGACATTGAG AGGCATGAACCAGAACTGCTTTATGGGTGAATGCAAGCTAGAGTGATATTGATAGTATAG GTGATGTGTATTCCGATGTCTTATTTTAATGAAGATATCTTTTTTTATTATAATTTTATG TGGACTTGATGGTTATTTATAATACTGCAGTGATGGC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)