cluster # 3935

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Oryza sativa
cluster # 3935 cluster # 3935 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3935#0 length = 677 sequences # 2

consensus_3935#1 length = 139 sequences # 1

consensusID : consensus_3935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence

                              [GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTACTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGGAGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGCAGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTGTAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTT]

[+] EMBL AK063608             [GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTACTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGGAGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGCAGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTGTAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTT]
[+] EMBL AK119680             [      GCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTACTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGGAGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGCAGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGCGGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACGCGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGTAGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCGGAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTGTAATTTGGCCCAATAAGGCTACCGGCCTTCCAACCGGAGATCGTTAGTCTTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGTCACGAGGAACCTCTCTT]




>consensus_3935#0
GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTA
CTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGG
AGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGC
AGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGC
GGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGC
GCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACG
CGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGT
AGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCG
GAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTG
TAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTA
ACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGT
CACGAGGAACCTCTCTT

consensusID : consensus_3935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 139
fasta sequence

                              [GAGTAGAAATTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATANTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF315075             [GAGTAGAAATTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATANTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3935#1
GAGTAGAAATTGGCCTACTAACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTG
CCCATGGATCATANTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3935#0      GCTTCAGCTACGTAGCCGTTGTTCATCACTCACTCAACTCAGCTCAGTAGTCAGTGCGTA 60
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      CTAGGGACCGATCGATGGAGAAGCTGGTGCCGAACACGAAGAAGGCAATGGAGGACAAGG 120
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      AGGAGAAGCCCAAGGTGCCTTCGAGCGACCCGGACCTCGTCGACCTCGTCGCCGGCGAGC 180
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      AGCCGCAGCTGCAGCGGGAGCACCAGCCGCCCAACATCTCCGAGATGAAGCCGCTGACGC 240
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      GGGAGGCGTACGGCGGCGGGATGTACGCCAACGAGGGGCGGAGGGACCCGACGCGGCCGC 300
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      GCGCCAGCGCCACGCAGAGCGCCGACGGCCCGGAGGAGGCCGCCGTCAGGCCCAAGCACG 360
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      CGCCGCCGCCGTCCACCGGCGACCGCGACCTCGACATCACCGGCCAGTCCTACATCCAGT 420
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      AGTTTGTTGTGTGTGTCCGTGCCGTGACGGTGTATGCGTGTAGTCAGGCAGTTTGGTCCG 480
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      GAACAAAGATGTGCATAGGTCGTTCCACGCTGTAACGAATAAATGTAAGTTTACTTGCTG 540
consensus_3935#1      ------------------------------------------------------------
                                                                                  

consensus_3935#0      TAATTTGGCCCAATAAGGCTACCGGCCTACCAACCGGAGATCGTTAGTCTTGGCCTACTA 600
consensus_3935#1      ----------------------------------------GAGTAGAAATTGGCCTACTA 20
                                                                **     ***********

consensus_3935#0      ACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATAATAAAGT 660
consensus_3935#1      ACTCTTATGGACCTTGCCAATGGGCTAATCTGACCAAGTGCCCATGGATCATANTAAAAA 80
                      ***************************************************** ****  

consensus_3935#0      CACGAGGAACCTCTCTT------------------------------------------ 677
consensus_3935#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 139
                       *  *  **