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Oryza sativa
cluster # 3961 cluster # 3961       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3961#0 length = 2632 sequences # 3  

consensusID : consensus_3961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2632
fasta sequence
                              [AACAATTACAAGTAGCTTCCTACTATTACGACTAGTACCATCAAACTACTTCATCCGACTGAGAGCTGAGCTCAGACATAAGAGAGTAATGGCGACGATGCTTGTGGGTGTTTCTACAGGAGTAATGAACACCCTCCTGTCCAAGCTCTCCAAGATTTTGGAGGACAAATACACAAAGCTCAAAGGAGTACGCCGTCAAATCGCATTCTTTAGAAATGAGTTGAGCAGCATGAAGGCTGCCTTGGAGATGCTTGAAACTGTAGAGGAACTTGATCCCCTCCAGAAGGAATGGAGGGACACAGTGCGTGAGCTGGCTTATGATATCGAGGACTGTATTGATCCCTTCTTGGTTCTTGTTGATCAGAAGCAAGATGAACAATCAACATTCTTTAAGGGGTTCTCCTACAAACTGAAGAAGATGAAGGCTCGCCATGAGATCTCTAATGAGATTGAAGAACTGAAGACACGCGTGATAGAGGCAAGCAAGAGGCACAAGAGATATAATTTTGTTGGTCTACAATCCAGCCATGGCACTTCTGGTATTGACCCTAGGCTGCGAGCACTCTACGTTGAGGTTGATGAGCTTGTGGGAATCAAAGGACCAAAGGAGCATGTCATGGAGTGGTTTGCCAAGGGGAGAGGTGATGTAGAAGTGAAGGTGTTGTCCGTTGTGGGTTCTGGAGGTCTGGGTAAGACTACTCTTGCCAACCAAATCTTCCGTCAATTGAAGTGCCAATTTGAATGCACAGGTTTTGTATCTGTGTCACGAAGTCCTGACATAAAGAGTATTTAAAGACAAATGCATACTGAGGTAGGGATCACTGATGACACATCTGAAGATGAGCGACAACTGATAGACAAAATAAGGGACCACCTCAAAGATAAAAGGTACTTTGTTGTAATTGATGATGTATGGGATGTTGAAGCATGGGAAGCTGTGAAACTTGCCTTGTTCAATAATAGATGTGGTAGCAGAACCGTCATGACAACACGTAATGCAGCAGTTGCATCGCATTGCTCACGTGGTGGTGTTTGTGTCTATCAAATGGAACCCCTTAGTTTTGCTGACTCCAAAATGTTGTTTTGCCAAAGAGCATTTCGTTCCCAGGAATTATACTATCCCCATTTGGAAGAAGTTTGTGATGAGATACTGGCAAAGTGTGGTGGATTACCATTGGCAATTATTACTGTATCTAGCTTGTTAGCCGGCAAGCATGCAAAAGATGAATGGGACAGGATGCTAACTGCTATTGGCCATGCACTTGCTAAGAATCCTGATGCTGCTAACATGACAAAGATATTATCTCTCAGTTACTTTGATCTTCCCCACCATCTAAGAACTTGTTTCTTATATTTGAGTGTATTTCCAGAAGATTACAAGATCAGCAAGCAACACTTGATAAATAGATGGATTGCCGAAGGATTTGTTCATGAAGAACAAGGATGGAGGACCTATGAAGTTGGCGGGAACTATTTTAATGATCTCATCAATAGAAGTTTGATCGAACCAGTTGATATAAATGATGGCCAGGCGAAGGCATGTCAAGTTCATGACATCATTCTTGATTTCATCACATGCAAGGCTGCCGAGGAAAATTTCGTCACCTCAGTGAATTCTGTGGAGCATGGGAACATTTCAGAATGCAGAGTTCATAGGCTCTGTGTCAAGAATCACAATAATGAAAAGGTTAGCAAACCAACAAGCCTGAATGTCACTCATGTCCGGTCACTTACCATGTTTGGGCATGTCGATGGAATTTCCTTGTTTGCTTTCCCAATTTTGCGTGTGTTGGACTTATCATATTCACTGTTAAAAGACAAACATCTTAAAAATATTGAAAAGTTGCATTTTCTCAAGTATTTATCTCTCCGGTCAACATTAATAACTAAGCTCCCAAGAAAGATTGGACAACTGAACTGTCTAGAAACACTGGACATATCTTATACTGAAATTCTAGAACTGCCGCTAAGTATTGCAAAACTTGAGTGCCTGGCCAATCTATATGTTGGAAGAGGGACTAGATTTCCGGACAGATTAATTGGTAAGATGCATAGCCTGGTAGAACTAGAGGAATTTGGCGTGTCATGTGAACTAGGCAAGTCTCTGCAAGGATTCAGTCAGCTATCAAAGCTTAGGACGTTGAAAGTTCATCTTTTTTGGTGGTCAGATGCTGAGGAGTGTCAAAATTACGTGTCAGCTTTGCTATCTAGCAACCTTCATCATCTATATTTGACCGGTGGCCCACTGATCATGGAGAAGTGGTACCCTCCTAGTCCTTGCATCATCCGGAAGCTTCATATCATAGGCTGTTACATCCGTAAGGTCCCAAACTGGATGAGCTCGCTTGGAAGCCTCACTGAATTACAACTCTGGATCCATAGAATGGGACCGAATGATATTGAGATCCTTGGCGCAATACCCAGCTTGTGTTTTCTCAAACTTAAAACTATGTGTGGCATCAATGGAAGGATCATCATATGTAGCAACAAAGGATTCAGAAGTCTGACATATTTCTCATTACGAATCAAGAGATGTGGGACCTTGCTAGAGTTTGAACCAGAATCAATGCCAAAGCTTGATAACTTCCAAGTGGAATTCCGTTTACATGGAATGGATTGCCTGAATGGTGCT]

[+] EMBL AK071471             [AACAATTACAAGTAGCTTCCTACTATTACGACTAGTACCATCAAACTACTTCATCCGACTGAGAGCTGAGCTCAGACATAAGAGAGTAATGGCGACGATGCTTGTGGGTGTTTCTACAGGAGTAATGAACACCCTCCTGTCCAAGCTCTCCAAGATTTTGGAGGACAAATACACAAAGCTCAAAGGAGTACGCCGTCAAATCGCATTCTTTAGAAATGAGTTGAGCAGCATGAAGGCTGCCTTGGAGATGCTTGAAACTGTAGAGGAACTTGATCCCCTCCAGAAGGAATGGAGGGACACAGTGCGTGAGCTGGCTTATGATATCGAGGACTGTATTGATCCCTTCTTGGTTCTTGTTGATCAGAAGCAAGATGAACAATCAACATTCTTTAAGGGGTTCTCCTACAAACTGAAGAAGATGAAGGCTCGCCATGAGATCTCTAATGAGATTGAAGAACTGAAGACACGCGTGATAGAGGCAAGCAAGAGGCACAAGAGATATAATTTTGTTGGTCTACAATCCAGCCATGGCACTTCTGGTATTGACCCTAGGCTGCGAGCACTCTACGTTGAGGTTGATGAGCTTGTGGGAATCAAAGGACCAAAGGAGCATGTCATGGAGTGGTTTGCCAAGGGGAGAGGTGATGTAGAAGTGAAGGTGTTGTCCGTTGTGGGTTCTGGAGGTCTGGGTAAGACTACTCTTGCCAACCAAATCTTCCGTCAATTGAAGTGCCAATTTGAATGCACAGGTTTTGTATCTGTGTCACGAAGTCCTGACATAAAGAGTATTTAAAGACAAATGCATACTGAGGTAGGGATCACTGATGACACATCTGAAGATGAGCGACAACTGATAGACAAAATAAGGGACCACCTCAAAGATAAAAGGTACTTTGTTGTAATTGATGATGTATGGGATGTTGAAGCATGGGAAGCTGTGAAACTTGCCTTGTTCAATAATAGATGTGGTAGCAGAACCGTCATGACAACACGTAATGCAGCAGTTGCATCGCATTGCTCACGTGGTGGTGTTTGTGTCTATCAAATGGAACCCCTTAGTTTTGCTGACTCCAAAATGTTGTTTTGCCAAAGAGCATTTCGTTCCCAGGAATTATACTATCCCCATTTGGAAGAAGTTTGTGATGAGATACTGGCAAAGTGTGGTGGATTACCATTGGCAATTATTACTGTATCTAGCTTGTTAGCCGGCAAGCATGCAAAAGATGAATGGGACAGGATGCTAACTGCTATTGGCCATGCACTTGCTAAGAATCCTGATGCTGCTAACATGACAAAGATATTATCTCTCAGTTACTTTGATCTTCCCCACCATCTAAGAACTTGTTTCTTATATTTGAGTGTATTTCCAGAAGATTACAAGATCAGCAAGCAACACTTGATAAATAGATGGATTGCCGAAGGATTTGTTCATGAAGAACAAGGATGGAGGACCTATGAAGTTGGCGGGAACTATTTTAATGATCTCATCAATAGAAGTTTGATCGAACCAGTTGATATAAATGATGGCCAGGCGAAGGCATGTCAAGTTCATGACATCATTCTTGATTTCATCACATGCAAGGCTGCCGAGGAAAATTTCGTCACCTCAGTGAATTCTGTGGAGCATGGGAACATTTCAGAATGCAGAGTTCATAGGCTCTGTGTCAAGAATCACAATAATGAAAAGGTTAGCAAACCAACAAGCCTGAATGTCACTCATGTCCGGTCACTTACCATGTTTGGGCATGTCGATGGAATTTCCTTGTTTGCTTTCCCAATTTTGCGTGTGTTGGACTTATCATATTCACTGTTAAAAGACAAACATCTTAAAAATATTGAAAAGTTGCATTTTCTCAAGTATTTATCTCTCCGGTCAACATTAATAACTAAGCTCCCAAGAAAGATTGGACAACTGAACTGTCTAGAAACACTGGACATATCTTATACTGAAATTCTAGAACTGCCGCTAAGTATTGCAAAACTTGAGTGCCTGGCCAATCTATATGTTGGAAGAGGGACTAGATTTCCGGACAGATTAATTGGTAAGATGCATAGCCTGGTAGAACTAGAGGAATTTGGCGTGTCATGTGAACTAGGCAAGTCTCTGCAAGGATTCAGTCAGCTATCAAAGCTTAGGACGTTGAAAGTTCATCTTTTTTGGTGGTCAGATGCTGAGGAGTGTCAAAATTACGTGTCAGCTTTGCTATCTAGCAACCTTCATCATCTATATTTGACCGGTGGCCCACTGATCATGGAGAAGTGGTACCCTCCTAGTCCTTGCATCATCCGGAAGCTTCATATCATAGGCTGTTACATCCGTAAGGTCCCAAACTGGATGAGCTCGCTTGGAAGCCTCACTGAATTACAACTCTGGATCCATAGAATGGGACCGAATGATATTGAGATCCTTGGCGCAATACCCAGCTTGTGTTTTCTCAAACTTAAAACTATGTGTGGCATCAATGGAAGGATCATCATATGTAGCAACAAAGGATTCAGAAGTCTGACATATTTCTCATTACGAATCAAGAGATGTGGGACCTTGCTAGAGTTTGAACCAGAATCAATGCCAAAGCTTGATAACTTCCAAGTGGAATTCCGTTTACATGGAATGGATTGCCTGAATGGTGCT]
[+] EMBL CB670528             [                                                                                                                                  ACCCTCCTGTCCAAGCTCTCCAAGATTTTGGAGGACAAATACACAAAGCTCAAAGGAGTACGCCGTCAAATCGCATTCTTTAGAAATGAGTTGAGCAGCATGAAGGCTGCCTTGGAGATGCTTGAAACTGTAGAGGAACTTGATCCCCTCCAGAAGGAATGGAGGGACACAGTGCGTGAGCTGGCTTATGATATCGAGGACTGTATTGATCCCTTCTTGGTTCTTGTTGATCAGAAGCAAGATGAACAATCAACATTCTTTAAGGGGTTCTCCTACAAACTGAAGAAGATGAAGGCTCGCCATGAGATCTCTAATGAGATTGAAGAACTGAAGACACGCGTGATAGAGGCAAGCAAGAGGCACAAGAGATATAATTTTGTTGGTCTACAATCCAGCCATGGCACTTCTGGTATTGACCCTAGGCTGCGAGCACTCTACGTTGAGGTTGATGAGCTTGTGGGAATCAAAGGACCAAAGGAGCATGTCATGGAGTGGTTTGCCAAGGGGAGAGGTGATGTAGAAGTGAAGGTGTTGTCCGTTGTGGGTTCTGGAGGTCTGGGTAAGACTACTCTTGCCAACCAAATCTTCCGTCAATTGAAGTGCCAATTTGAATGCACAGGTTTTGTATCTGTGTCACGAAGTCCTGACATAAAGAGTATTTAAAGACAAATGCATACTGAGGTAGGGATCACTGATGACACATCTGAAGATGAGCGACAACTGATAGACAANATAAGGGACCACCTCAAAGATAAAAGGTACTTTGTTGTAATTGATGATGTATGGGATGTTGAAGCATGGGAAGCTGTGAAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB679879             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCAAGTCTCTGCAAGGATTCAGTCAGCTATCAAAGCTTAGGACGTTGAAAGTTCATCTTTTTTGGTGGTCAGATGCTGAGGAGTGTCAAAATTACGTGTCAGCTTTGCTATCTAGCAACCTTCATCATCTATATTTGACCGGTGGCCCACTGATCATGGAGAAGTGGTACCCTCCTAGTCCTTGCATCATCCGGAAGCTTCATATCATAGGCTGTTACATCCGTAAGGTCCCAAACTGGATGAGCTCGCTTGGAAGCCTCACTGAATTACAACTCTGGATCCATAGAATGGGACCGAATGATATTGAGATCCTTGGCGCAATACCCAGCTTGTGTTTTCTCAAACTTAAAACTATGTGTGGCATCAATGGAAGGATCATCATATGTAGCAACAAAGGATTCAGAAGTCTGACATATTTCTCATTACGAATCAAGAGATGTGGGACCTTGCTAGAGTTTGAACCAGAATCAATGCCAAAGCTTGATAACTTCCAAGTGGAATTCCGTTTACATGGAATGGATTGCCTGAATGGTGCT]


>consensus_3961#0 AACAATTACAAGTAGCTTCCTACTATTACGACTAGTACCATCAAACTACTTCATCCGACT GAGAGCTGAGCTCAGACATAAGAGAGTAATGGCGACGATGCTTGTGGGTGTTTCTACAGG AGTAATGAACACCCTCCTGTCCAAGCTCTCCAAGATTTTGGAGGACAAATACACAAAGCT CAAAGGAGTACGCCGTCAAATCGCATTCTTTAGAAATGAGTTGAGCAGCATGAAGGCTGC CTTGGAGATGCTTGAAACTGTAGAGGAACTTGATCCCCTCCAGAAGGAATGGAGGGACAC AGTGCGTGAGCTGGCTTATGATATCGAGGACTGTATTGATCCCTTCTTGGTTCTTGTTGA TCAGAAGCAAGATGAACAATCAACATTCTTTAAGGGGTTCTCCTACAAACTGAAGAAGAT GAAGGCTCGCCATGAGATCTCTAATGAGATTGAAGAACTGAAGACACGCGTGATAGAGGC AAGCAAGAGGCACAAGAGATATAATTTTGTTGGTCTACAATCCAGCCATGGCACTTCTGG TATTGACCCTAGGCTGCGAGCACTCTACGTTGAGGTTGATGAGCTTGTGGGAATCAAAGG ACCAAAGGAGCATGTCATGGAGTGGTTTGCCAAGGGGAGAGGTGATGTAGAAGTGAAGGT GTTGTCCGTTGTGGGTTCTGGAGGTCTGGGTAAGACTACTCTTGCCAACCAAATCTTCCG TCAATTGAAGTGCCAATTTGAATGCACAGGTTTTGTATCTGTGTCACGAAGTCCTGACAT AAAGAGTATTTAAAGACAAATGCATACTGAGGTAGGGATCACTGATGACACATCTGAAGA TGAGCGACAACTGATAGACAAAATAAGGGACCACCTCAAAGATAAAAGGTACTTTGTTGT AATTGATGATGTATGGGATGTTGAAGCATGGGAAGCTGTGAAACTTGCCTTGTTCAATAA TAGATGTGGTAGCAGAACCGTCATGACAACACGTAATGCAGCAGTTGCATCGCATTGCTC ACGTGGTGGTGTTTGTGTCTATCAAATGGAACCCCTTAGTTTTGCTGACTCCAAAATGTT GTTTTGCCAAAGAGCATTTCGTTCCCAGGAATTATACTATCCCCATTTGGAAGAAGTTTG TGATGAGATACTGGCAAAGTGTGGTGGATTACCATTGGCAATTATTACTGTATCTAGCTT GTTAGCCGGCAAGCATGCAAAAGATGAATGGGACAGGATGCTAACTGCTATTGGCCATGC ACTTGCTAAGAATCCTGATGCTGCTAACATGACAAAGATATTATCTCTCAGTTACTTTGA TCTTCCCCACCATCTAAGAACTTGTTTCTTATATTTGAGTGTATTTCCAGAAGATTACAA GATCAGCAAGCAACACTTGATAAATAGATGGATTGCCGAAGGATTTGTTCATGAAGAACA AGGATGGAGGACCTATGAAGTTGGCGGGAACTATTTTAATGATCTCATCAATAGAAGTTT GATCGAACCAGTTGATATAAATGATGGCCAGGCGAAGGCATGTCAAGTTCATGACATCAT TCTTGATTTCATCACATGCAAGGCTGCCGAGGAAAATTTCGTCACCTCAGTGAATTCTGT GGAGCATGGGAACATTTCAGAATGCAGAGTTCATAGGCTCTGTGTCAAGAATCACAATAA TGAAAAGGTTAGCAAACCAACAAGCCTGAATGTCACTCATGTCCGGTCACTTACCATGTT TGGGCATGTCGATGGAATTTCCTTGTTTGCTTTCCCAATTTTGCGTGTGTTGGACTTATC ATATTCACTGTTAAAAGACAAACATCTTAAAAATATTGAAAAGTTGCATTTTCTCAAGTA TTTATCTCTCCGGTCAACATTAATAACTAAGCTCCCAAGAAAGATTGGACAACTGAACTG TCTAGAAACACTGGACATATCTTATACTGAAATTCTAGAACTGCCGCTAAGTATTGCAAA ACTTGAGTGCCTGGCCAATCTATATGTTGGAAGAGGGACTAGATTTCCGGACAGATTAAT TGGTAAGATGCATAGCCTGGTAGAACTAGAGGAATTTGGCGTGTCATGTGAACTAGGCAA GTCTCTGCAAGGATTCAGTCAGCTATCAAAGCTTAGGACGTTGAAAGTTCATCTTTTTTG GTGGTCAGATGCTGAGGAGTGTCAAAATTACGTGTCAGCTTTGCTATCTAGCAACCTTCA TCATCTATATTTGACCGGTGGCCCACTGATCATGGAGAAGTGGTACCCTCCTAGTCCTTG CATCATCCGGAAGCTTCATATCATAGGCTGTTACATCCGTAAGGTCCCAAACTGGATGAG CTCGCTTGGAAGCCTCACTGAATTACAACTCTGGATCCATAGAATGGGACCGAATGATAT TGAGATCCTTGGCGCAATACCCAGCTTGTGTTTTCTCAAACTTAAAACTATGTGTGGCAT CAATGGAAGGATCATCATATGTAGCAACAAAGGATTCAGAAGTCTGACATATTTCTCATT ACGAATCAAGAGATGTGGGACCTTGCTAGAGTTTGAACCAGAATCAATGCCAAAGCTTGA TAACTTCCAAGTGGAATTCCGTTTACATGGAATGGATTGCCTGAATGGTGCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)