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Oryza sativa
cluster # 3965 cluster # 3965       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3965#0 length = 1628 sequences # 3  

consensusID : consensus_3965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1628
fasta sequence
                              [TGAGGTGAAGGTCAGTGATGGCGTGGGGGGCTTGCGCTCTGCTCCTCCTCCTCCTGGTACTTGGTGCGGGAGGAGGAGGAGGGGTGCATTGCCTGGAGGTGACGAGGAGCAGGAGAGCCTTGCAGAGGAGGCACCACCTGAGGTCAAGAGCAGAGAGTGGCGCCACCATACTGGAGCTCAGGCACCATGGCGGCGGCGGCGGCGGCGGCTCGGGGAAGAGCGGCGGGAGGAGCAGGGAGGAGGAGCTCGGCGGCCTCTTCTCCTCCGACGCCGCGCGCGTCTCGTCGCTGCAGCGTCGCGCAGGCGGCGGGTCTTGGGCGGAGGACGAGGCGGCGGCGGCGGCGGCGACCGGGCGGGTGCCCGTCACGTCCGGGGCGAGGCTACGGACGCTGAACTACGTGGCCACCGTGGGGCTTGGCGGCGGCGAGGCGACGGTGATCGTGGACACGGCGAGCGAGCTCACCTGGGTGCAGTGCGCGCCGTGCGCGTCGTGCCACGACCAGCAGGGCCCGCTGTTCGACCCGGCGTCGTCGCCGTCCTACGCCGTGCTGCCGTGCAACTCCTCCTCCTGCGACGCGCTGCAGGTGGCCACCGGCTCGGCGGCCGGGGCGTGCGGCGGCGGCGAGCAGCCTTCCTGCAGCTACACCCTCAGCTACCGTGACGGCTCCTACTCCCAGGGCGTCCTGGCGCACGACAAGCTGAGCCTCGCCGGCGAGGTCATCGACGGCTTCGTGTTCGGCTGCGGCACCAGCAACCAGGGGCCATTCGGCGGCACCTCCGGTCTGATGGGTCTAGGCCGGAGCCAGCTCTCGCTGATATCACAAACCATGGATCAATTCGGTGGTGTCTTCTCATACTGCCTACCTCTCAAGGAGTCAGAATCATCAGGGTCTCTCGTCCTCGGCGACGACACCTCGGTGTACCGGAATTCAACCCCAATTGTGTACACAACCATGGTTTCCGACCCGGTGCAAGGGCCCTTCTACTTTGTTAACCTGACCGGGATCACCATTGGCGGCCAGGAGGTAGAATCTTCAGCTGGCAAGGTTATCGTCGACTCGGGAACGATCATCACGAGCCTCGTGCCTTCGGTGTACAATGCGGTCAAGGCAGAGTTCTTGAGCCAGTTCGCGGAGTATCCGCAAGCGCCGGGGTTCTCGATTCTTGACACTTGCTTCAACTTGACAGGGTTCAGAGAAGTGCAGATTCCTAGCCTGAAGTTTGTGTTTGAAGGCAATGTGGAGGTGGAGGTTGATTCCAGTGGAGTGCTCTACTTTGTCAGCAGTGATTCTTCTCAGGTTTGCTTGGCTCTGGCCTCCCTGAAATCTGAGTATGAAACTTCGATCATTGGTAATTACCAGCAGAAGAATCTGAGGGTCATATTTGACACTCTAGGATCTCAAATTGGATTTGCACAAGAGACTTGTGATTATATTTAACATGATTTGATTTGG-AGGG-GGAAGGGGGCCATGAGCTATGTGAATATCCCTATACCTGGAGATCTGTTTTGAGATTACTTCTGGTAATTGGCAAATGGTAGTACAGTATTAGTTATTGTCAAATGTACNAGCATCTATNATTGCTTCATTCTGTTTTTTTTTTTTTACTGCCGTTTCTTTGTGCTTTCA]

[+] EMBL AK120024             [TGAGGTGAAGGTCAGTGATGGCGTGGGGGGCTTGCGCTCTGCTCCTCCTCCTCCTGGTACTTGGTGCGGGAGGAGGAGGAGGGGTGCATTGCCTGGAGGTGACGAGGAGCAGGAGAGCCTTGCAGAGGAGGCACCACCTGAGGTCAAGAGCAGAGAGTGGCGCCACCATACTGGAGCTCAGGCACCATGGCGGCGGCGGCGGCGGCGGCTCGGGGAAGAGCGGCGGGAGGAGCAGGGAGGAGGAGCTCGGCGGCCTCTTCTCCTCCGACGCCGCGCGCGTCTCGTCGCTGCAGCGTCGCGCAGGCGGCGGGTCTTGGGCGGAGGACGAGGCGGCGGCGGCGGCGGCGACCGGGCGGGTGCCCGTCACGTCCGGGGCGAGGCTACGGACGCTGAACTACGTGGCCACCGTGGGGCTTGGCGGCGGCGAGGCGACGGTGATCGTGGACACGGCGAGCGAGCTCACCTGGGTGCAGTGCGCGCCGTGCGCGTCGTGCCACGACCAGCAGGGCCCGCTGTTCGACCCGGCGTCGTCGCCGTCCTACGCCGTGCTGCCGTGCAACTCCTCCTCCTGCGACGCGCTGCAGGTGGCCACCGGCTCGGCGGCCGGGGCGTGCGGCGGCGGCGAGCAGCCTTCCTGCAGCTACACCCTCAGCTACCGTGACGGCTCCTACTCCCAGGGCGTCCTGGCGCACGACAAGCTGAGCCTCGCCGGCGAGGTCATCGACGGCTTCGTGTTCGGCTGCGGCACCAGCAACCAGGGGCCATTCGGCGGCACCTCCGGTCTGATGGGTCTAGGCCGGAGCCAGCTCTCGCTGATATCACAAACCATGGATCAATTCGGTGGTGTCTTCTCATACTGCCTACCTCTCAAGGAGTCAGAATCATCAGGGTCTCTCGTCCTCGGCGACGACACCTCGGTGTACCGGAATTCAACCCCAATTGTGTACACAACCATGGTTTCCGACCCGGTGCAAGGGCCCTTCTACTTTGTTAACCTGACCGGGATCACCATTGGCGGCCAGGAGGTAGAATCTTCAGCTGGCAAGGTTATCGTCGACTCGGGAACGATCATCACGAGCCTCGTGCCTTCGGTGTACAATGCGGTCAAGGCAGAGTTCTTGAGCCAGTTCGCGGAGTATCCGCAAGCGCCGGGGTTCTCGATTCTTGACACTTGCTTCAACTTGACAGGGTTCAGAGAAGTGCAGATTCCTAGCCTGAAGTTTGTGTTTGAAGGCAATGTGGAGGTGGAGGTTGATTCCAGTGGAGTGCTCTACTTTGTCAGCAGTGATTCTTCTCAGGTTTGCTTGGCTCTGGCCTCCCTGAAATCTGAGTATGAAACTTCGATCATTGGTAATTACCAGCAGAAGAATCTGAGGGTCATATTTGACACTCTAGGATCTCAAATTGGATTTGCACAAGAGACTTGTGATTATATTTAACATGATTTGATTTGG AGGG GGAAGGGGGCCATGAGCTATGTGAATATCCCTATACCTGGAGATCTGTTTTGAGATTACTTCTGGTAATTGGCAAATGGTAGTACAGTATT                                                                               ]
[+] EMBL CA997961             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGTGATCGTGGACACTGCGAGCGAGCTCACCTGGGTGCAGTGCGCGCCGTGCGCGTCGTGCCACGACCAGCAGGGCCCGCTGTTCGACCCGGCGTTGTCTCCGTCCTACGCCGTGCTGCCGTGCAACTCCTCCTCCTGCGACGCGCTGCAGGTGGCCACCGGCTCTGCGGACGGGGCGTGCAGCGGATGAGAGCATCCTTCCTGCAGCTACACCCTCAGCTACCGTGACGGCTCCTACTCCCAGGGCGTACTGGCGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA753727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGGTAGAATCTTCAGCTGGCAAGGTTATCGTCGACTCGGGAACGATCATCACGAGCCTCGTGCCTTCGGTGTACAATGCGGTCAAGGCAGAGTTCTTGAGCCAGTTCGCGGAGTATCCGCAAGCGCCGGGGTTCTCGATTCTTGACACTTGCTTCAACTTGACAGGGTTCAGAGAAGTGCAGATTCCTAGCCTGAAGTTTGTGTTTGAAGGCAATGTGGAGGTGGAGGTTGATTCCAGTGGAGTGCTCTACTTTGTCAGCAGTGATTCTTCTCAGGTTTGCTTGGCTCTGGCCTCCCTGAAATCTGAGTATGAAACTTCAATCATTGGTAATTACCAGCAGAAGAATCTGAGGGTCATATTTGACACTCTAGGATCTCAAATTGGATTTGCACAAGAGACTTGTGATTATATTTAACATGATTTGATTTGGNAGGGNGGAAGGGGGCCATGAGCTATGTGAATATCCCTATACCTGGAGATCTGTTTTGAGATTACTTCTGGTAATTGGCAAATGGTAGTACAGTATTAGTTATTGTCAAATGTACNAGCATCTATNATTGCTTCATTCTGTTTTTTTTTTTTTACTGCCGTTTCTTTGTGCTTTCA]


>consensus_3965#0 TGAGGTGAAGGTCAGTGATGGCGTGGGGGGCTTGCGCTCTGCTCCTCCTCCTCCTGGTAC TTGGTGCGGGAGGAGGAGGAGGGGTGCATTGCCTGGAGGTGACGAGGAGCAGGAGAGCCT TGCAGAGGAGGCACCACCTGAGGTCAAGAGCAGAGAGTGGCGCCACCATACTGGAGCTCA GGCACCATGGCGGCGGCGGCGGCGGCGGCTCGGGGAAGAGCGGCGGGAGGAGCAGGGAGG AGGAGCTCGGCGGCCTCTTCTCCTCCGACGCCGCGCGCGTCTCGTCGCTGCAGCGTCGCG CAGGCGGCGGGTCTTGGGCGGAGGACGAGGCGGCGGCGGCGGCGGCGACCGGGCGGGTGC CCGTCACGTCCGGGGCGAGGCTACGGACGCTGAACTACGTGGCCACCGTGGGGCTTGGCG GCGGCGAGGCGACGGTGATCGTGGACACGGCGAGCGAGCTCACCTGGGTGCAGTGCGCGC CGTGCGCGTCGTGCCACGACCAGCAGGGCCCGCTGTTCGACCCGGCGTCGTCGCCGTCCT ACGCCGTGCTGCCGTGCAACTCCTCCTCCTGCGACGCGCTGCAGGTGGCCACCGGCTCGG CGGCCGGGGCGTGCGGCGGCGGCGAGCAGCCTTCCTGCAGCTACACCCTCAGCTACCGTG ACGGCTCCTACTCCCAGGGCGTCCTGGCGCACGACAAGCTGAGCCTCGCCGGCGAGGTCA TCGACGGCTTCGTGTTCGGCTGCGGCACCAGCAACCAGGGGCCATTCGGCGGCACCTCCG GTCTGATGGGTCTAGGCCGGAGCCAGCTCTCGCTGATATCACAAACCATGGATCAATTCG GTGGTGTCTTCTCATACTGCCTACCTCTCAAGGAGTCAGAATCATCAGGGTCTCTCGTCC TCGGCGACGACACCTCGGTGTACCGGAATTCAACCCCAATTGTGTACACAACCATGGTTT CCGACCCGGTGCAAGGGCCCTTCTACTTTGTTAACCTGACCGGGATCACCATTGGCGGCC AGGAGGTAGAATCTTCAGCTGGCAAGGTTATCGTCGACTCGGGAACGATCATCACGAGCC TCGTGCCTTCGGTGTACAATGCGGTCAAGGCAGAGTTCTTGAGCCAGTTCGCGGAGTATC CGCAAGCGCCGGGGTTCTCGATTCTTGACACTTGCTTCAACTTGACAGGGTTCAGAGAAG TGCAGATTCCTAGCCTGAAGTTTGTGTTTGAAGGCAATGTGGAGGTGGAGGTTGATTCCA GTGGAGTGCTCTACTTTGTCAGCAGTGATTCTTCTCAGGTTTGCTTGGCTCTGGCCTCCC TGAAATCTGAGTATGAAACTTCGATCATTGGTAATTACCAGCAGAAGAATCTGAGGGTCA TATTTGACACTCTAGGATCTCAAATTGGATTTGCACAAGAGACTTGTGATTATATTTAAC ATGATTTGATTTGGAGGGGGAAGGGGGCCATGAGCTATGTGAATATCCCTATACCTGGAG ATCTGTTTTGAGATTACTTCTGGTAATTGGCAAATGGTAGTACAGTATTAGTTATTGTCA AATGTACNAGCATCTATNATTGCTTCATTCTGTTTTTTTTTTTTTACTGCCGTTTCTTTG TGCTTTCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)