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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1906 fasta sequence
[GTTTTACCTGCAGATGCGAGCAGCCGCCGGCGGCGGCGGTCGGAGAGCGAGTGGAGGGGAGGATGCTGTGCCGCCGGCGGCGCGTGGGGGCGGCGGTGCGGTGGCTGTCGCGGCTGGCGCCGCCCGCGCCGGCGGAGGCGGACCCGGTGGTGGTCCGCGTGGACGGGAGCAACGTGGCCCGCCTCGGGAAGCCCAAGCCCGGCCCGAGGCCGCGGCAGCTGCTGTCGCTGCCGCCGTTCCCGGGCGGCGGGGTCGGCGACCCGCTCCCCGGGAGGAAGGCGGCGGCGCCGCGGCGGGTGACGGCGGTCAGCTGGGTGAAGCACTACCTCGCCGACGTGCCGCAGGAGGTCGTGCAGGCGCACTTCAACAAGAGGCTGGTTTATTCCGAGTGCTCAGATCATGAGGTTTCAGTTGAGACTATTAAGAACCAGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCATGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCATTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCATACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAAATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATGAAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCGGGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAAAAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCATTGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTACTTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTGCACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGATTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTCTAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGCAGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAGAAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATTGCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCCATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA]
[+] EMBL AK120052 [GTTTTACCTGCAGATGCGAGCAGCCGCCGGCGGCGGCGGTCGGAGAGCGAGTGGAGGGGAGGATGCTGTGCCGCCGGCGGCGCGTGGGGGCGGCGGTGCGGTGGCTGTCGCGGCTGGCGCCGCCCGCGCCGGCGGAGGCGGACCCGGTGGTGGTCCGCGTGGACGGGAGCAACGTGGCCCGCCTCGGGAAGCCCAAGCCCGGCCCGAGGCCGCGGCAGCTGCTGTCGCTGCCGCCGTTCCCGGGCGGCGGGGTCGGCGACCCGCTCCCCGGGAGGAAGGCGGCGGCGCCGCGGCGGGTGACGGCGGTCAGCTGGGTGAAGCACTACCTCGCCGACGTGCCGCAGGAGGTCGTGCAGGCGCACTTCAACAAGAGGCTGGTTTATTCCGAGTGCTCAGATCATGAGGTTTCAGTTGAGACTATTAAGAACCAGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCATGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCATTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCATACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAAATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATGAAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCGGGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAAAAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCATTGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTACTTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTGCACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGATTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTCTAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGCAGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAGAAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATTGCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCCATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA]
[+] EMBL AK059686 [ AGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCATGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCATTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCATACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAAATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATGAAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCGGGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAAAAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCATTGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTACTTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTGCACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGATTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTCTAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGCAGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAGAAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATTGCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCCATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGCGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA]
consensusID : consensus_3969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[GGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF311982 [GGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3969#0 GTTTTACCTGCAGATGCGAGCAGCCGCCGGCGGCGGCGGTCGGAGAGCGAGTGGAGGGGA 60
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 GGATGCTGTGCCGCCGGCGGCGCGTGGGGGCGGCGGTGCGGTGGCTGTCGCGGCTGGCGC 120
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 CGCCCGCGCCGGCGGAGGCGGACCCGGTGGTGGTCCGCGTGGACGGGAGCAACGTGGCCC 180
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 GCCTCGGGAAGCCCAAGCCCGGCCCGAGGCCGCGGCAGCTGCTGTCGCTGCCGCCGTTCC 240
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 CGGGCGGCGGGGTCGGCGACCCGCTCCCCGGGAGGAAGGCGGCGGCGCCGCGGCGGGTGA 300
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 CGGCGGTCAGCTGGGTGAAGCACTACCTCGCCGACGTGCCGCAGGAGGTCGTGCAGGCGC 360
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 ACTTCAACAAGAGGCTGGTTTATTCCGAGTGCTCAGATCATGAGGTTTCAGTTGAGACTA 420
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TTAAGAACCAGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCA 480
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCA 540
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCA 600
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAA 660
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 ATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATG 720
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 AAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCG 780
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 GGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAA 840
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 AAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCAT 900
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTAC 960
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTG 1020
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 CACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGA 1080
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTC 1140
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 TAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGC 1200
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 AGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAG 1260
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 AAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATT 1320
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 GCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATG 1380
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 AAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGC 1440
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 CTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCC 1500
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 ATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAG 1560
consensus_3969#1 ------------------------------------------------------------
consensus_3969#0 GCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAA 1620
consensus_3969#1 ---------------------------------------------------GGGTGAGAA 9
*********
consensus_3969#0 TCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAG 1680
consensus_3969#1 TCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAG 69
************************************************************
consensus_3969#0 CTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCT 1740
consensus_3969#1 CTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCT 129
************************************************************
consensus_3969#0 GAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATC 1800
consensus_3969#1 GAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAAAAAAAAAAAA 189
************************************************* * * * *
consensus_3969#0 CTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAA 1860
consensus_3969#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 219
* *** ***
consensus_3969#0 TTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA 1906
consensus_3969#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||