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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2494 fasta sequence
[TCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGTCTACCGCCGCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGGACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCTCTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCGCCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCACCTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCCGAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCCGTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACCACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCGGAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTCTACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTCACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAACGCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCGGGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACGTTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGCGTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTGTCGGGAAGTGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGATTGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAATCTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAAGGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTTGGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCTGAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCCGAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACTTCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCATCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCAGATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATTAAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGTATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGATGACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCAAGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTACAGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGAGTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTACAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAACAATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACCGATCGAGAAGGACTATCTGGGAGGCCATGGTA--CAAACACCTGATTTATGCACCATCA-CTGCATGATGATTACGGAGCGCAGGTGTATCCA-GGTGTTGATGATGCCA-TTCAGATGGCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAAGCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTGGGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAAAGTAAACTGTATCAAAATAGGACTCGAGGGAATAAAGGGTACATGTACC]
[+] EMBL AK069026 [TCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGTCTACCGCCGCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGGACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCTCTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCGCCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCACCTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCCGAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCCGTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACCACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCGGAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTCTACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTCACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAACGCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCGGGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACGTTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGCGTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTGTCGGGAAGTGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGATTGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAATCTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAAGGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTTGGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCTGAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCCGAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACTTCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCATCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCAGATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATTAAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGTATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGATGACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCAAGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTACAGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGAGTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTACAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAACAATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACCGATCGAGAAGGACTATCTGGGAGGCCATGGTA CAAACACCTGATTTATGCACCATCA CTGCATGATGATTACGGAGCGCAGGTGTATCCA GGTGTTGATGATGCCA TTCAGATGGCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAAGCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTGGGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAAAGTAAACTGTATCAAAATAGGACTCGAGGGAATAAAGGGTACATGTACC]
[+] EMBL BM038810 [ cCATTC CCGATCGAGAAGGACTATCTGGGAGCCCATGGTAACCAACCACCTGATTTATGCACCATCACCTGCATGATGATTACGGAGC CAGGTGTATCCACGGTGTTGATGAT CCACTTCAGAT GCAGAGAGGACGAATACGTCCGAATCCTGGCGATCTGT CAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCA GCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAAC ACTGTTGGGGAACCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTG ]
consensusID : consensus_3971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 153 fasta sequence
[CGAACGGGTGAAGACCGCCAAAGCTTTGGAAAGTNAACTGTATCAAAATAGGACCTCGAGGGAATAAAGGGTACATGTACCTTTGATAGCTACAGAGTGGAAAGTAAACTATATCAAATAGGAACAGTAAACAAAGATAAAACAAAATTTCGC]
[+] EMBL BQ906307 [CGAACGGGTGAAGACCGCCAAAGCTTTGGAAAGTNAACTGTATCAAAATAGGACCTCGAGGGAATAAAGGGTACATGTACCTTTGATAGCTACAGAGTGGAAAGTAAACTATATCAAATAGGAACAGTAAACAAAGATAAAACAAAATTTCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3971#0 TCTCCATCCACCCTGGTGGTAGTCAAGCACTCAAGCTAGTGTAACGGCGAGTCTACCGCC 60
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GCGTTGCCCGACGCGGCCATGCCGCCGCCGCCCGAAGACGACGGGTCCTCCTCCGCGCGG 120
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 ACGCCGCTCATACCCCCCACACCTCCTCCTCCCGGCCGAGCGGTGGCGCGGCTCCACCCT 180
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 CTCCCGCTCCTCGTTGCGGCGGCCTTCGCCGCATCGTACCACCTCCTCGTCGCGCCCGCG 240
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 CCGTCGTACTACCGCTCGCTCTTCCTCTCCCTCGGATCCAACGACACCGCGGCAGCCCAC 300
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 CTCCACGCGCTCACCCTCCGCCCCCACCTCGCGGGCACCGAGGCCAACGCCCGCGCCGCC 360
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GAGCACGTCGTCTCCGCGCTCTCCTCCCTCTCCTTCCCCACCCGCGTCGTGCCCTACTCC 420
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GTCCTCCTCGCCTACCCGGTCCACCGCTCCCTCTCCCTCTCGGCGCCAGGCCACGCCACC 480
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 ACCCCCTTTGCGCTGGTGCAGGACACATACCCCGGTGATCCCTATGCCGCGGTCTCCGCG 540
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GAGGCCGTCCCCACCTTCCTCGCCTACGCCGCGTCCGGCTCGGTCGCCGCCGAGGCCGTC 600
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 TACGCTAACTACGGCCGCCCGGAGGATTTCGCCTACCTCGCCGCCCGCGGCGTAGACGTC 660
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 ACCGGGAAGGTCGTCCTCGCGCGCTACGGCAAGGTGTACCGCGGCGACATCGTGATAAAC 720
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GCCCGGAAAGCTGGCGCGGCGGCGGCGGTCATATACACCGATGCCAAGGACTACGCGGCG 780
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GGGGAGGCCTTCCCGGATGGTCCATGGATGCCGCCCACCGGTGTGCAGGTCGGGAGCACG 840
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 TTCAAGGGGGTGGGGGATCCCACGACGCCGATGTGGGCGTCGTCCGAAGGGTGCGAGCGC 900
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GTGAGCATCCCGGAGGCGATGGCCACCGACGACATGCCGGGGATACCGGCGCTGCCTGTG 960
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 TCGGGAAGTGATGGGGAGGCTATACTACAGCTTATCGGCGGTGATGTCGCGCCCAAGGAT 1020
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 TGGCAAGGCGGAGATGGCTCGCCGGTTTACCGGCTCGGGCCCGGGCCGGCGGTGCTCAAT 1080
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 CTCACCTACATTGGGAACGAGACAATGGCTACTATTCAGAATGTCATCTCAGTGATCGAA 1140
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GGGAAAGAAGAACCTGAACGCTATATAATCCTTGGTAATCATCGTGATGCATGGACTTTT 1200
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GGGGCAGTTGATCCGAACAGTGGAACAGCAGCCTTGCTTGAGTTAGCTCAAAGGTTCTCT 1260
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GAGCTACAAAAGAAGGGTTGGAGGCCTCGACGGACCATCATCTTGTGTAACTGGGATGCC 1320
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GAAGAGTATGGACTGGTTGGATCCACTGAATGGGTTGAAGAGAACAGGGCTATGCTAACT 1380
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 TCAAGAACTGTTGCTTACCTGAATGTTGATTCTGCAGTGTATGGTGCAGGGTTTTATGCA 1440
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 TCAGCTACTCCTCAACTTGATGAGTTGCTTAAGGAGGCGAGTAAACAGGTTCAAAATCCA 1500
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GATAATGAGACACAAAGTCTGTATGACTTATGGATGGCTTCTGATAGTTCTTCCATGATT 1560
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 AAGATTGGAAGAATAGGAGGTGGAGGATCAGATTATTCTGCCTTTGTTCAACACATTGGT 1620
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 ATCCCTTCAATTGACATTTCTATGGGATCAGAATATGCGGTCTACCATAGCTTGTATGAT 1680
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GACTTTGTGTGGATGGAGAAGTTCGGAGATCCCTTGTTCCGCAGGCACGTCGCAGCGGCA 1740
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 AGCATGTGGGGGCTTGTCGCCCTGAGGCTTTCCGATGAGGAGATCCTACCCTTCAACTAC 1800
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 AGCACTTATGCTGTAGAGCTTGAGAAGGGTGCAATCGATATAAATAAGAGATTGCTGGGA 1860
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GTGCCTGTCAGCTCATCTCCCCTGCAAAAGTCAATCGCCGAGTTCAAAAGGGCAGCTCTA 1920
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 CAAATGGATTCTGAAATGAAGGCCTTACAGACAAGGAAAGTTTGGAACCCCTGGAGAAAC 1980
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 AATCCCCTGAAGGTCAGAGATCTCAATGAGCGGTTGATGATGACGGAGCGAGCATTCACC 2040
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GATCGAGAAGGACTATCTGGGAGGCCATGGTACAAACACCTGATTTATGCACCATCACTG 2100
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 CATGATGATTACGGAGCGCAGGTGTATCCAGGTGTTGATGATGCCATTCAGATGGCAGAG 2160
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 AGGACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGG 2220
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GTCATCAACCAGGCCTCGCTAGTCCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAA 2280
consensus_3971#1 ------------------------------------------------------------
consensus_3971#0 GCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAATCGTTGACTGCGATAAA 2340
consensus_3971#1 ---------------------------------------CGAACGGGTGAAGACCGCCAA 21
** * *** * **
consensus_3971#0 TGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTG 2400
consensus_3971#1 AGCTTTGGA-AAGTNAACTGTATCAAAATAGGACCTCGAGGGAATA-AAGGGTACATGTA 79
* ** * ** * * * * ** * * ** * ** * * ** * ***
consensus_3971#0 GGTTTTAAATCCAAAGAGCGAAGGGTGAAGAGCAAAGCTTTGGAA-AGTAAACTGTATCA 2459
consensus_3971#1 CCTTTGATAGCTACAGAGTGGAAAGTAAACTATATCAAATAGGAACAGTAAACAAAGATA 139
*** * * * * **** * * ** ** * * **** ******* *
consensus_3971#0 AAATAGGACTCGAGGGAATAAAGGGTACATGTACC 2494
consensus_3971#1 AAACAAAATTTCGC--------------------- 153
*** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||