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Oryza sativa
cluster # 3972 cluster # 3972       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3972#0 length = 830 sequences # 2  
consensus_3972#1 length = 223 sequences # 1  

consensusID : consensus_3972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 830
fasta sequence
                              [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAATTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATGTATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA]

[+] EMBL AB051107             [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAATTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATGTATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA]
[+] EMBL AK120073             [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTT                                                                                                                            ]


>consensus_3972#0 CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCT CGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCT CGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGT GCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAA GGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCA GGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCT GAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTT CGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAA CTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTT GTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAA ATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAA TAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAA TTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATG TATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA



consensusID : consensus_3972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence
                              [ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF318096             [ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_3972#1 ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCAT AGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTA CTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAA AAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3972#0      CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCT 60
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      CGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCT 120
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      CGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGT 180
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      GCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAA 240
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      GGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCA 300
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      GGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCT 360
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      GAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTT 420
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      CGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAA 480
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      CTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTT 540
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      GTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAA 600
consensus_3972#1      ------------ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAA 48
                                   *     *   *********************** *************

consensus_3972#0      ATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAA 660
consensus_3972#1      ATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAA 108
                      ******* ************ ** ********************* ********** ***

consensus_3972#0      TAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAA 720
consensus_3972#1      TAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAA 168
                      ************** ***** ****************** ************ * *****

consensus_3972#0      TTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATG 780
consensus_3972#1      TAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 223
                      *  *** * ** **  ** * **         * * * *      *   * * **     

consensus_3972#0      TATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA 830
consensus_3972#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)