These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAATTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATGTATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA] [+] EMBL AB051107 [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAATTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATGTATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA] [+] EMBL AK120073 [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTT ] consensusID : consensus_3972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF318096 [ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3972#0 CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCT 60 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 CGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCT 120 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 CGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGT 180 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 GCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAA 240 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 GGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCA 300 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 GGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCT 360 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 GAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTT 420 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 CGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAA 480 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 CTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTT 540 consensus_3972#1 ------------------------------------------------------------ consensus_3972#0 GTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAA 600 consensus_3972#1 ------------ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAA 48 * * *********************** ************* consensus_3972#0 ATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAA 660 consensus_3972#1 ATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAA 108 ******* ************ ** ********************* ********** *** consensus_3972#0 TAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAA 720 consensus_3972#1 TAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAA 168 ************** ***** ****************** ************ * ***** consensus_3972#0 TTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATG 780 consensus_3972#1 TAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 223 * *** * ** ** ** * ** * * * * * * * ** consensus_3972#0 TATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA 830 consensus_3972#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||