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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAATTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATGTATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA]
[+] EMBL AB051107 [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAATTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATGTATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA]
[+] EMBL AK120073 [CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCTCGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCTCGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGTGCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAAGGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCAGGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCTGAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTTCGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAACTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTTGTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAAATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAATAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTT ]
consensusID : consensus_3972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF318096 [ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAAATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAATAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAATAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3972#0 CTTCGGCGGCTCGTACCGCGACCTCCTCGGCGACACGGACAGGCTCACCGTCGTCACGCT 60
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 CGGCCCGCAGCAGATGGCGCAGGCGGTGAACGCGCTCGCCGCGCGCAGGCCGGCCGACCT 120
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 CGCCAACGGCGCGGCGCAGCGGCGCGCCATGGACGCGGTGGCGGCGCTGCTCCTGATGGT 180
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 GCACGAGGCGACGCGGTTCCAGACCGTGTCGAGGCTGGTCGCCGGGCTCATGCACCCCAA 240
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 GGCGGCGAGCAAGAGCGGCGCCATCACCACCGCGATGAGGAAGCAGGTGAACGGGTGGCA 300
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 GGTCCTCTCGGCGGCCATGCTCGGCACGGACGCGCGGCCGCCGGCGAGGTTCGCGCCGCT 360
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 GAGGGACATGGGCGTGGACACGGTGGAGGAGGCGGCGGCGACGGTGGGGATCCTGCTGTT 420
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 CGTCGAGGTCCCCGGCGGGATGACGGCGGCGAGGGCGCTCCAGCTGTTCCACCATGGGAA 480
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 CTAGATTTTGATGCAGCTGGATTTTTTTCTCCTTGTTTGAGCCAATAAAATGTTAGATTT 540
consensus_3972#1 ------------------------------------------------------------
consensus_3972#0 GTGATGGTTTTGCTATTTGATTTGAGTAGAAATGTTAGATTTTGTGTGTATTCGGAATAA 600
consensus_3972#1 ------------ATGGAATAAAGGAGTAGAAATGTTAGATTTTGTGGGTATTCGGAATAA 48
* * *********************** *************
consensus_3972#0 ATTCAGCACCATAGTTTTATCTATAGCTATTTTAATTCATGTGAGTACTAGTAAGAACAA 660
consensus_3972#1 ATTCAGCCCCATAGTTTTATTTAAAGCTATTTTAATTCATGTGAGGACTAGTAAGACCAA 108
******* ************ ** ********************* ********** ***
consensus_3972#0 TAACATATCCTACTCTGACTGATGCAACCAGATAGAGATTATACTTGTTCATACTGAAAA 720
consensus_3972#1 TAACATATCCTACTTTGACTAATGCAACCAGATAGAGATAATACTTGTTCATCCGGAAAA 168
************** ***** ****************** ************ * *****
consensus_3972#0 TTTGTTCATAACAACTTTCACAATCTTTTCTCAGAGATATTTTGCATTCAGATAACTATG 780
consensus_3972#1 TAAGTTAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 223
* *** * ** ** ** * ** * * * * * * * **
consensus_3972#0 TATACACAGGACACATATTTCTGGATATGAACATCCAATTGAAAAAAAAA 830
consensus_3972#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||