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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1424 fasta sequence
[ACCACTAAAAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCCCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCAACAACCGGCACGAGCTGATCAAGCGGCACGGGGAGTTGGAGGCGGTGACCCTGCTCCGTGGCGCGCTCTTCTCGGTCACGATGGGATCCAACGATTTCATCAACAACTACCTCACCCCAATCTTCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAGGTCTTCGTCGACGCCCTCATATCCAAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCGAACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCAAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCGTGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTGCGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTAGGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTTTGGGGAGACGCACTGATGGATATGTGCATGTGATGCCATTGATGGAC]
[+] EMBL AK060625 [ACCACTAAAAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCCCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCAACAACCGGCACGAGCTGATCAAGCGGCACGGGGAGTTGGAGGCGGTGACCCTGCTCCGTGGCGCGCTCTTCTCGGTCACGATGGGATCCAACGATTTCATCAACAACTACCTCACCCCAATCTTCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAGGTCTTCGTCGACGCCCTCATATCCAAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCGAACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCAAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCGTGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTGCGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTAGGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTTTGGGGAGACGCACTGATGGATATGTGCATGTGATGCCATTGATGGAC]
[-] EMBL CB671170 [ CAACTACCTCACCCCAATCTTCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAGGTCTTCGTCGACGCCCTCATATCCAAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCGAACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCGAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCGTGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCATCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTGCGCCAGCGGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTAGGAGTAGTAGAAGGATCTAGGGGGATAGCTATTGATTTCTG ]
consensusID : consensus_3974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[AAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCTCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGATTAGGTGGAGATTTCTCAGATGATACAACGATCTGACCTGCACGGACGCATTAGATCACCTAGGAACAGGAGATATAGGCAAAAGCTAATTCTCACAGCAATGTTTACGATCTTCATTGCCGGAACATGCATGGCTAATTGGGCTCATAAACTTTGGTTTAATTTTCAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCCACAACCGGC]
[+] EMBL CB671169 [AAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCTCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGATTAGGTGGAGATTTCTCAGATGATACAACGATCTGACCTGCACGGACGCATTAGATCACCTAGGAACAGGAGATATAGGCAAAAGCTAATTCTCACAGCAATGTTTACGATCTTCATTGCCGGAACATGCATGGCTAATTGGGCTCATAAACTTTGGTTTAATTTTCAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCCACAACCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3974#0 ACCACTAAAAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGC 60
consensus_3974#1 --------AAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGC 52
****************************************************
consensus_3974#0 ATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCCCTCGTCCTCTTTCGCTTGA 120
consensus_3974#1 ATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCTCTCGTCCTCTTTCGCTTGA 112
**************************************** *******************
consensus_3974#0 TATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTG 180
consensus_3974#1 TATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTG 172
************************************************************
consensus_3974#0 TTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTA 240
consensus_3974#1 TTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTA 232
************************************************************
consensus_3974#0 CTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGAC 300
consensus_3974#1 CTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGAC 292
************************************************************
consensus_3974#0 GCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATC 360
consensus_3974#1 GCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATC 352
************************************************************
consensus_3974#0 GACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATA 420
consensus_3974#1 GACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATA 412
************************************************************
consensus_3974#0 CTAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGC 480
consensus_3974#1 CTAGGATTAG-------GTGGAGATTT-------CTCAGATGATACAACGATCTGACCTG 458
***** * * * ***** * * ** * * * *
consensus_3974#0 GACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATT--CTGAACCAAA 538
consensus_3974#1 CACGGACGCATTAGA----TCACCTAGG-AACAGGAGATATAGGCAAAAGCTAATTCTCA 513
*** * *** *** *** * * ** * ***** ** * * *
consensus_3974#0 CCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCAACA 598
consensus_3974#1 C-AGCAATGTTTACGAT-----CTTCATTGCCGGAACATGCATGGCTAATTGGGCTCATA 567
* * * * * ** * * *** * * * ** * ** * ** * *
consensus_3974#0 ACCGGCACGAGCTGATCAAGCGGCACGGGGAGTTGGAGGCGGTGACCCTGCTCCGTGGCG 658
consensus_3974#1 A---ACTTTGGTTTAATTTTCAGGGCAGGAAATGTCGGGAGGA--------TTTGTGCCG 616
* * * * * * * * ** * * ** ** * *** **
consensus_3974#0 CGCTCTTCTCGGTCACGATGGGATCCAACGATTTCATCAACAACTACCTCACCCCAATCT 718
consensus_3974#1 C--CCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGT 674
* ** * ** ** * ** *** ** * ** * *** * *
consensus_3974#0 TCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAG-GTCTTCGTCGACGCCCTCATATCC 777
consensus_3974#1 CCGGCG-GCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCA-ATCT 732
***** ** * ** * * * * **** ****** * * *** ***
consensus_3974#0 AAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCG 837
consensus_3974#1 GGACGCCCAGATCGACAACTACGCCCACAACCGGC------------------------- 767
* ** ** * * ** * * * * *
consensus_3974#0 AACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACG 897
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 GCGTGCGCCAAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTG 957
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 GTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGC 1017
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 GTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCG 1077
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 TGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTAC 1137
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 TGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAAC 1197
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 GCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTG 1257
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 CGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTA 1317
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 GGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTT 1377
consensus_3974#1 ------------------------------------------------------------
consensus_3974#0 TGGGGAGACGCACTGATGGATATGTGCATGTGATGCCATTGATGGAC 1424
consensus_3974#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||