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Oryza sativa
cluster # 3979 cluster # 3979       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3979#0 length = 1769 sequences # 3  

consensusID : consensus_3979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1769
fasta sequence
                              [CACAAGTCCACAGAGACACACCTCACCAGCTTGATCAAGAGCTAGCCAAGCCAAATGGAGCTCCTGCCATGGCTTCTCGGCTTCGTGGTCAAGTACCCGGAGATCATGGCGTCCGCCGCTTGCTTCTTGCTGCTCTTCTGCAGGTTTAGGAGGAGGAGCAAGCGGATTCCGACGAACTGGCCGGTGGTCGGCGCGCTCCCGGCGATCGTGGCGAACGCCGGGCGCGTCCACGACTGGGTGACGGAGTTCCTTCGCGCGGCGGCGATGTCGCACGTCGTCGAGGGACCGTGGGGCTCGCCGGGGGACGTGCTCATCACCGCCGACCCGGCGAACGTGGCGCACATGTTCACGGCGAACTTCGGCAACTACCCCAAGGGGGAGGAGTTCGCCGCCATGTTCGACGTGCTCGGCGGCGGCATCTTCAACGCCGACGGCGAGTCGTGGTCGTTCCAGCGGCGGAAGGCGCACGCGCTGCTGTCGGACGCGCGGTTCCGCGCCGCCGTGGCGGCGAGCACGTCGCGGAAGCTCGGCGGCGGGCTCGTGCCGCTGCTCGACGGGGTCGCCGCGTCGGGCGCCGCCGTGGACCTGCAGGACGTGTTCATGCGCCTCACGTTCGACCTCACGGCGATGTTCGTGTTCGGCGTCGACCCCGGCTGCCTCGCCGCCGACTTCCCCACCGTCCCCTTCGCCGCGGCCATGGACGACGCCGAGGAGGTGCTCTTCTACCGCCACGTTGCGCCCGTGCCATGGCTAAGGCTCCAGAGCTACCTCAAGATCGGGCACTACAAGAAGATGGCCAAGGCTCGGGAGGTGCTCGACGCGTCCATCGCCGAGCTCATCGCTCTCCGGCGAGAGCGCAAGGCGGCCGACGCCAACGCCACCGGCGACGCCGACCTGCTCACGGCGTACCTGGCATGCCAGGACGAGATCGGCATGGACGGCGCCGCGTTTGACGCGTTCCTGCGCGACACGACGCTGAACCTCATGGTCGCCGGCCGCGACACGACGAGCTCGGCCCTGACATGGTTCTTCTGGCTGCTCTCCAACCACCCCGGCGTCGAGGCCAGGATCCTCGCCGAGCTCCGCGCGCACCCGCCGTCACCCACCGGCGCCGAGCTGAAGCGGCTGGTCTACCTGCACGCGGCGCTGTCGGAGTCGCTCCGGCTGTACCCGCCGGTGCCGTTCGAGCACAAGGCGGCGGCGAGGCCGGACACGCTGCCGAGCGGCGCCGCCGTGGGGCCGACGCGGCGGGTGATCGTGTCGCTCTACTCCATGGGGAGGATGGAGGCGGTGTGGGGGAAGGGCTGCGAGGAGTTCAGGCCGGAGCGGTGGCTGACGCCGGCGGGGAGGTTCCGGCACGAGCGCTCGTGCAAGTTCGCCGCGTTCAACGTCGGCCCGCGCACGTGCCTCGGCCGCGACCTCGCGTTCGCGCAGATGAAGGCCGTCGTCGCCGCCGTCGTGCCGCGGTTCCGTGTCGCCGCCGCCGCGGCGCCGCCGCGGCCCAAGCTGTCCATCATCCTCCACATGAGGGATGGACTGAAGGTGAAGGTGCACAGGAGACAAGAGGATTGAACCAACTTCCTTTGGACACTTTGGAACGAACCATACAGTTCGAGGTTTCGTATTGATATAGCAGAAAAACATTGTTTGGTTTCATATTGATATAGCAGAAAAAATATTGTTTAGATATGGGTGCTCTGCAATCTACAAGAGCTATTAGGGCATACATGCACTGATGATACTGTGCTCCATTGATTAATTAATTCGTG]

[+] EMBL AK110852             [CACAAGTCCACAGAGACACACCTCACCAGCTTGATCAAGAGCTAGCCAAGCCAAATGGAGCTCCTGCCATGGCTTCTCGGCTTCGTGGTCAAGTACCCGGAGATCATGGCGTCCGCCGCTTGCTTCTTGCTGCTCTTCTGCAGGTTTAGGAGGAGGAGCAAGCGGATTCCGACGAACTGGCCGGTGGTCGGCGCGCTCCCGGCGATCGTGGCGAACGCCGGGCGCGTCCACGACTGGGTGACGGAGTTCCTTCGCGCGGCGGCGATGTCGCACGTCGTCGAGGGACCGTGGGGCTCGCCGGGGGACGTGCTCATCACCGCCGACCCGGCGAACGTGGCGCACATGTTCACGGCGAACTTCGGCAACTACCCCAAGGGGGAGGAGTTCGCCGCCATGTTCGACGTGCTCGGCGGCGGCATCTTCAACGCCGACGGCGAGTCGTGGTCGTTCCAGCGGCGGAAGGCGCACGCGCTGCTGTCGGACGCGCGGTTCCGCGCCGCCGTGGCGGCGAGCACGTCGCGGAAGCTCGGCGGCGGGCTCGTGCCGCTGCTCGACGGGGTCGCCGCGTCGGGCGCCGCCGTGGACCTGCAGGACGTGTTCATGCGCCTCACGTTCGACCTCACGGCGATGTTCGTGTTCGGCGTCGACCCCGGCTGCCTCGCCGCCGACTTCCCCACCGTCCCCTTCGCCGCGGCCATGGACGACGCCGAGGAGGTGCTCTTCTACCGCCACGTTGCGCCCGTGCCATGGCTAAGGCTCCAGAGCTACCTCAAGATCGGGCACTACAAGAAGATGGCCAAGGCTCGGGAGGTGCTCGACGCGTCCATCGCCGAGCTCATCGCTCTCCGGCGAGAGCGCAAGGCGGCCGACGCCAACGCCACCGGCGACGCCGACCTGCTCACGGCGTACCTGGCATGCCAGGACGAGATCGGCATGGACGGCGCCGCGTTTGACGCGTTCCTGCGCGACACGACGCTGAACCTCATGGTCGCCGGCCGCGACACGACGAGCTCGGCCCTGACATGGTTCTTCTGGCTGCTCTCCAACCACCCCGGCGTCGAGGCCAGGATCCTCGCCGAGCTCCGCGCGCACCCGCCGTCACCCACCGGCGCCGAGCTGAAGCGGCTGGTCTACCTGCACGCGGCGCTGTCGGAGTCGCTCCGGCTGTACCCGCCGGTGCCGTTCGAGCACAAGGCGGCGGCGAGGCCGGACACGCTGCCGAGCGGCGCCGCCGTGGGGCCGACGCGGCGGGTGATCGTGTCGCTCTACTCCATGGGGAGGATGGAGGCGGTGTGGGGGAAGGGCTGCGAGGAGTTCAGGCCGGAGCGGTGGCTGACGCCGGCGGGGAGGTTCCGGCACGAGCGCTCGTGCAAGTTCGCCGCGTTCAACGTCGGCCCGCGCACGTGCCTCGGCCGCGACCTCGCGTTCGCGCAGATGAAGGCCGTCGTCGCCGCCGTCGTGCCGCGGTTCCGTGTCGCCGCCGCCGCGGCGCCGCCGCGGCCCAAGCTGTCCATCATCCTCCACATGAGGGATGGACTGAAGGTGAAGGTGCACAGGAGACAAGAGGATTGAACCAACTTCCTTTGGACACTTTGGAACGAACCATACAGTTCGAGGTTTCGTATTGATATAGCAGAAAAACATTGTTTGGTTTCATATTGATATAGCAGAAAAAATATTGTTTAGATATGGGTGCTCTGCAATCTACAAGAGCTATTAGGGCATACATGCACTGATGATACTGTGCTCCATTGATTAATTAATTCGTG]
[+] EMBL CB642124             [         ACAGAGACACACCTCACCAGCTTGATCAAGAGCTAGCCAAGCCAAATGGAGCTCCTGCCATGGCTTCTCGGCTTCGTGGTCAAGTACCCGGAGATCATGGCGTCCGCCGCTTGCTTCTTGCTGCTCTTCTGCAGGTTTAGGAGGAGGAGCAAGCGGATTCCGACGAACTGGCCGGTGGTCGGCGCGCTCCCGGCGATCGTGGCGAACGCCGGGCGCGTCCACGACTGGGTGACGGAGTTCCTTCGCGCGGCGGCGATGTCGCACGTCGTCGAGGGACCGTGGGGCTCGCCGGGGGACGTGCTCATCACCGCCGACCCGGCGAACGTGGCGCACATGTTCACGGCGAACTTCGGCAACTACCCCAAGGGGGAGGAGTTCGCCGCCATGTTCGACGTGCTCGGCGGCGGCATCTTCAACGCCGACGGCGAGTCGTGGTCGTTCCAGCGGCGGAAGGCGCACGCGCTGCTGTCGGACGCGCGGTTCCGCGCCGCCGTGGCGGCGAGCACGTCGCGGAAGCTCGGCGGCGGGCTCGTGCCGCTGCTCGACGGGGTCGCCGCGTCGGGCGCCGCCGTGGACCTGCAGGACGTGTTCATGCGCCTCACGTTCGACCTCACGGCGATGTTCGTGTTCGGCGTCGACCCCGGCTGCCTCGCCGCCGACTTCCCCACCGTCCCCTTCGCCGCGGCCATGGACGACGCCGAGGAGGTGCTCTTCTACCGCCACGTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB642125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCGCTGTCGGAGTCGCTCCGGCTGTACCCGCCGGTGCCGTTCGAGCACAAGGCGGCGGCGAGGCCGGACACGCTGCCGAGCGGCGCCGCCGTGGGGCCGACGCGGCGGGTGATCGTGTCGCTCTACTCCATGGGGAGGATGGAGGCGGTGTGGGGGAAGGGCTGCGAGGAGTTCAGGCCGGAGCGGTGGCTGACGCCGGCGGGGAGGTTCCGGCACGAGCGCTCGTGCAAGTTCGCCGCGTTCAACGTCGGCCCGCGCACGTGCCTCGGCCGCGACCTCGCGTTCGCGCAGATGAAGGCCGTCGTCGCCGCCGTCGTGCCGCGGTTCCGTGTCGCCGCCGCCGCGGCGCCGCCGCGGCCCAAGCTGTCCATCATCCTCCACATGAGGGATGGACTGAAGGTGAAGGTGCACAGGAGACAAGAGGATTGAACCAACTTCGGTTGGACACTTTGGAACGAACCATACAGTTCGAGGTTTCGTATTGATATACCAGAAAAACATTGTTTaaggcata                                                                                                                ]


>consensus_3979#0 CACAAGTCCACAGAGACACACCTCACCAGCTTGATCAAGAGCTAGCCAAGCCAAATGGAG CTCCTGCCATGGCTTCTCGGCTTCGTGGTCAAGTACCCGGAGATCATGGCGTCCGCCGCT TGCTTCTTGCTGCTCTTCTGCAGGTTTAGGAGGAGGAGCAAGCGGATTCCGACGAACTGG CCGGTGGTCGGCGCGCTCCCGGCGATCGTGGCGAACGCCGGGCGCGTCCACGACTGGGTG ACGGAGTTCCTTCGCGCGGCGGCGATGTCGCACGTCGTCGAGGGACCGTGGGGCTCGCCG GGGGACGTGCTCATCACCGCCGACCCGGCGAACGTGGCGCACATGTTCACGGCGAACTTC GGCAACTACCCCAAGGGGGAGGAGTTCGCCGCCATGTTCGACGTGCTCGGCGGCGGCATC TTCAACGCCGACGGCGAGTCGTGGTCGTTCCAGCGGCGGAAGGCGCACGCGCTGCTGTCG GACGCGCGGTTCCGCGCCGCCGTGGCGGCGAGCACGTCGCGGAAGCTCGGCGGCGGGCTC GTGCCGCTGCTCGACGGGGTCGCCGCGTCGGGCGCCGCCGTGGACCTGCAGGACGTGTTC ATGCGCCTCACGTTCGACCTCACGGCGATGTTCGTGTTCGGCGTCGACCCCGGCTGCCTC GCCGCCGACTTCCCCACCGTCCCCTTCGCCGCGGCCATGGACGACGCCGAGGAGGTGCTC TTCTACCGCCACGTTGCGCCCGTGCCATGGCTAAGGCTCCAGAGCTACCTCAAGATCGGG CACTACAAGAAGATGGCCAAGGCTCGGGAGGTGCTCGACGCGTCCATCGCCGAGCTCATC GCTCTCCGGCGAGAGCGCAAGGCGGCCGACGCCAACGCCACCGGCGACGCCGACCTGCTC ACGGCGTACCTGGCATGCCAGGACGAGATCGGCATGGACGGCGCCGCGTTTGACGCGTTC CTGCGCGACACGACGCTGAACCTCATGGTCGCCGGCCGCGACACGACGAGCTCGGCCCTG ACATGGTTCTTCTGGCTGCTCTCCAACCACCCCGGCGTCGAGGCCAGGATCCTCGCCGAG CTCCGCGCGCACCCGCCGTCACCCACCGGCGCCGAGCTGAAGCGGCTGGTCTACCTGCAC GCGGCGCTGTCGGAGTCGCTCCGGCTGTACCCGCCGGTGCCGTTCGAGCACAAGGCGGCG GCGAGGCCGGACACGCTGCCGAGCGGCGCCGCCGTGGGGCCGACGCGGCGGGTGATCGTG TCGCTCTACTCCATGGGGAGGATGGAGGCGGTGTGGGGGAAGGGCTGCGAGGAGTTCAGG CCGGAGCGGTGGCTGACGCCGGCGGGGAGGTTCCGGCACGAGCGCTCGTGCAAGTTCGCC GCGTTCAACGTCGGCCCGCGCACGTGCCTCGGCCGCGACCTCGCGTTCGCGCAGATGAAG GCCGTCGTCGCCGCCGTCGTGCCGCGGTTCCGTGTCGCCGCCGCCGCGGCGCCGCCGCGG CCCAAGCTGTCCATCATCCTCCACATGAGGGATGGACTGAAGGTGAAGGTGCACAGGAGA CAAGAGGATTGAACCAACTTCCTTTGGACACTTTGGAACGAACCATACAGTTCGAGGTTT CGTATTGATATAGCAGAAAAACATTGTTTGGTTTCATATTGATATAGCAGAAAAAATATT GTTTAGATATGGGTGCTCTGCAATCTACAAGAGCTATTAGGGCATACATGCACTGATGAT ACTGTGCTCCATTGATTAATTAATTCGTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)