cluster # 3989

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Oryza sativa
cluster # 3989 cluster # 3989 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3989#0 length = 1686 sequences # 2

consensus_3989#1 length = 303 sequences # 1

consensusID : consensus_3989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1686
fasta sequence

                              [CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCGAGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCGCGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCGCGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGATGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGTCTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCTCGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTGATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACAGAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGACAACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGCTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTGCGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGCCCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGAAGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATGAATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGTTGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAAAGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTGTTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTCTGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTGCCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAGTGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAGATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGACACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTCTCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGACAAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTAAAAAAA]

[+] EMBL AK120166             [CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCGAGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCGCGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCGCGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGATGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGTCTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCTCGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTGATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACAGAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGACAACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGCTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTGCGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGCCCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGAAGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATGAATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGTTGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAAAGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTGTTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTCTGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTGCCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAGTGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAGATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGACACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTCTCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGACAAGTTTCTTGTTTTG                                                   ]
[-] EMBL CF329188             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTCTGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTGCCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAGTGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAGATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGACACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTCTCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGACAAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTAAAAAAA]




>consensus_3989#0
CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCG
AGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCG
CGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCG
CGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGA
TGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGT
CTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCT
CGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTG
ATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACA
GAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGAC
AACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCC
ACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGC
GTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGG
ATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAG
CTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTG
CGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGC
CCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGA
AGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATG
AATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGT
TGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAA
AGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTG
TTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTC
TGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTG
CCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAG
TGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAG
ATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGAC
ACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTC
TCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGAC
AAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTA
AAAAAA

consensusID : consensus_3989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TGACTGGACTGAAGGAGTAGAAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGGTACTGATCTAAATCTCATGAGTCTCGTCAGTTCTGAAAAATATTTTTTATGACAATTCTTTCATCTGCAGCT]

[+] EMBL CF329187             [TGACTGGACTGAAGGAGTAGAAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGGTACTGATCTAAATCTCATGAGTCTCGTCAGTTCTGAAAAATATTTTTTATGACAATTCTTTCATCTGCAGCT]




>consensus_3989#1
TGACTGGACTGAAGGAGTAGAAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCAC
GCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGC
AATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGT
GGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGGTACTGATCT
AAATCTCATGAGTCTCGTCAGTTCTGAAAAATATTTTTTATGACAATTCTTTCATCTGCA
GCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3989#0      CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCG 60
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCG 120
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      CGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCG 180
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      CGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGA 240
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      TGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGT 300
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      CTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCT 360
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      CGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTG 420
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      ATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACA 480
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      GAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGAC 540
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCC 600
consensus_3989#1      --------TGACTGGACTGAAGG--AGTAGAAACTAATCCAGTGCCACCAAGATTCATCC 50
                                 *****  * **    *    *****************************

consensus_3989#0      ACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGC 660
consensus_3989#1      ACAAGGCCACGCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGC 110
                      ******************* ****************************************

consensus_3989#0      GTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGG 720
consensus_3989#1      GTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGG 170
                      ************************************************************

consensus_3989#0      ATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAG 780
consensus_3989#1      ATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAG 230
                      ************************************************************

consensus_3989#0      CTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTG 840
consensus_3989#1      GTACTGATCTAAATCTCATGAGTCTCGTCAGTTCTGA--AAAATATTTTTTATGACAATT 288
                       *  ****   **  *   *  *   *     * ***   ** *  *  * *** *  * 

consensus_3989#0      CGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGC 900
consensus_3989#1      CTTTCATCTG--CAGCT------------------------------------------- 303
                      * ** * *    *** *                                           

consensus_3989#0      CCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGA 960
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATG 1020
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGT 1080
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      TGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAA 1140
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTG 1200
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      TTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTC 1260
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      TGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTG 1320
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      CCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAG 1380
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      TGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAG 1440
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      ATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGAC 1500
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      ACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTC 1560
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      TCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGAC 1620
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTA 1680
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      AAAAAA 1686
consensus_3989#1      ------