These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAACTGCCTTTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTCGTCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACCATGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGTTCGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCCGGCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGGNTTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGGAA] [+] EMBL AA754508 [NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAACTGCCTTTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTCGTCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACCATGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGTTCGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCCGGCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGGNTTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGGAA] consensusID : consensus_399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [GCCGTTGAGACGAACNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACACGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACNNTNTNNTGTGCGACGCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCGCCGGGTTCAANGTCGTCNTCNTCNAAAAAGGGGACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCCGACCATGGAACGCCTCTACNAAAATGGCGGCG] [+] EMBL AA754502 [GCCGTTGAGACGAACNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACACGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACNNTNTNNTGTGCGACGCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCGCCGGGTTCAANGTCGTCNTCNTCNAAAAAGGGGACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCCGACCATGGAACGCCTCTACNAAAATGGCGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_399#0 NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAA-CTGCCTTTTCGTCTTC 59 consensus_399#1 -----GCCGTTGAGACGAA--CNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTC 53 * ****** ** * ** *** ** **** ** ***** ********* consensus_399#0 TACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTC 119 consensus_399#1 TACACCGCGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACA-CGTC 112 ******************************** ****************** ** **** consensus_399#0 CCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCG 179 consensus_399#1 CCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCG 172 ************************************************************ consensus_399#0 CCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGG 239 consensus_399#1 CCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGG 232 ************************************************************ consensus_399#0 ACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGT 299 consensus_399#1 ACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGT 292 ************************************************************ consensus_399#0 CGTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGG 359 consensus_399#1 CGTCGCCGAGCGCGCACCACCACNNTNTNNT-------GTGCGACGCCGTCGTCNTCCGG 345 *********************** * * * *** ************** consensus_399#0 TCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTC 419 consensus_399#1 TCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCG-CCGGGTTCAANGTCGTC 404 ***************************************** ****** ********** consensus_399#0 GTCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACC 479 consensus_399#1 NTCNTCNAAAAAGGGGACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCC-GACC 463 ** ** * ****************** *** *********************** **** consensus_399#0 ATGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGT 539 consensus_399#1 ATGGAACGCCTCTACNAAAATGGCGGCG-------------------------------- 491 ***** *********** ********** consensus_399#0 TCGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCC 599 consensus_399#1 ------------------------------------------------------------ consensus_399#0 GGCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGG 659 consensus_399#1 ------------------------------------------------------------ consensus_399#0 NTTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGG 719 consensus_399#1 ------------------------------------------------------------ consensus_399#0 AA 721 consensus_399#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||