cluster # 399

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Oryza sativa
cluster # 399 cluster # 399 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_399#0 length = 721 sequences # 1

consensus_399#1 length = 491 sequences # 1

consensusID : consensus_399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAACTGCCTTTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTCGTCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACCATGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGTTCGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCCGGCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGGNTTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGGAA]

[+] EMBL AA754508             [NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAACTGCCTTTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTCGTCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACCATGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGTTCGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCCGGCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGGNTTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGGAA]




>consensus_399#0
NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAACTGCCTTTTCGTCTTCT
ACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTCC
CGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGC
CGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGA
CGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTC
GTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGGT
CCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTCG
TCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACCA
TGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGTT
CGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCCG
GCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGGN
TTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGGA
A

consensusID : consensus_399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [GCCGTTGAGACGAACNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACACGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACNNTNTNNTGTGCGACGCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCGCCGGGTTCAANGTCGTCNTCNTCNAAAAAGGGGACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCCGACCATGGAACGCCTCTACNAAAATGGCGGCG]

[+] EMBL AA754502             [GCCGTTGAGACGAACNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTCTACACCGCGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACACGTCCCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCGAGCGCGCACCACCACNNTNTNNTGTGCGACGCCGTCGTCNTCCGGTCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCGCCGGGTTCAANGTCGTCNTCNTCNAAAAAGGGGACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCCGACCATGGAACGCCTCTACNAAAATGGCGGCG]




>consensus_399#1
GCCGTTGAGACGAACNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTCTACACCG
CGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACACGTCCCGGCGGC
CGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCGCCGGCGAC
GGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGGACGACAAC
GCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGTCGTCGCCG
AGCGCGCACCACCACNNTNTNNTGTGCGACGCCGTCGTCNTCCGGTCCGGCTGCGGCGGC
GGCGTGGCCGCCGCCGTGCTCGCGTCGCCGGGTTCAANGTCGTCNTCNTCNAAAAAGGGG
ACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCCGACCATGGAACGCCTCTACNA
AAATGGCGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_399#0      NGAGCNCGTTTGAGAANAAGACATCTTTGGGCCCTCAAGGTAA-CTGCCTTTTCGTCTTC 59
consensus_399#1      -----GCCGTTGAGACGAA--CNTCNTTGACCCATCAACGTCCTCTGCCNNTTCGTCTTC 53
                           *  ******  **  * ** ***  ** **** **   *****  *********

consensus_399#0      TACACCGCGGTGGACGAGAACTTGGAGAACCCCNGTTGGAAGGCAATCGGGTNCAGCGTC 119
consensus_399#1      TACACCGCGGTGGACGAGAACTTGGAGAACCCNAGTTGGAAGGCAATCGGGTACA-CGTC 112
                     ********************************  ****************** ** ****

consensus_399#0      CCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCG 179
consensus_399#1      CCGGCGGCCGAGGAAGAGCCACAGAAAGAAGAACCTACAGAAGCAACGCCGACGCCGGCG 172
                     ************************************************************

consensus_399#0      CCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGG 239
consensus_399#1      CCGGCGACGGCGCCGCCGTGCCGGCTCTGGACAATGGCGTCGTGGAGACCAAGCAGCTGG 232
                     ************************************************************

consensus_399#0      ACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGT 299
consensus_399#1      ACGACAACGCCTTGCTCATGTCGCTCGCGGAGAANGGCCTCGCGCTGAAGACGGGCGCGT 292
                     ************************************************************

consensus_399#0      CGTCGCCGAGCGCGCACCACCACTANCTGGTGTTCTGTGNCNGACNCCGTCGTCNTCCGG 359
consensus_399#1      CGTCGCCGAGCGCGCACCACCACNNTNTNNT-------GTGCGACGCCGTCGTCNTCCGG 345
                     ***********************    *  *       *   *** **************

consensus_399#0      TCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCNGCCGGGTNCAANGTCGTC 419
consensus_399#1      TCCGGCTGCGGCGGCGGCGTGGCCGCCGCCGTGCTCGCGTCG-CCGGGTTCAANGTCGTC 404
                     *****************************************  ****** **********

consensus_399#0      GTCCTCCAGAAAGGGGACTACTTCGCCGCCAGGGACTACAGCTCGCTGGAAGGCCCGACC 479
consensus_399#1      NTCNTCNAAAAAGGGGACTACTTCGCCNCCANGGACTACAGCTCGCTGGAAGGCC-GACC 463
                      ** ** * ****************** *** *********************** ****

consensus_399#0      ATGGAGCGCCTCTACNAGAATGGCGGCGTGTTCNGCNCGGCGAACGTNNCACCACCATGT 539
consensus_399#1      ATGGAACGCCTCTACNAAAATGGCGGCG-------------------------------- 491
                     ***** *********** **********                                

consensus_399#0      TCGCCGGCGCNACNGTCNGCNGCGGCTCCGCNGTGAACTGGTCNGCCTGCNTCCCNCGCC 599
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      GGCGAACGTGTTGCNNGANTGGTCNAACNANCATGGGCTCCTCTGTTTCNGGGGGNCAGG 659
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      NTTCNTNCANGCCATGGAANCCTTGTGCGCTCCGCTCNGGGTTNCCNGCCCGGTGCCNGG 719
consensus_399#1      ------------------------------------------------------------
                                                                                 

consensus_399#0      AA 721
consensus_399#1      --