These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 769 fasta sequence [CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTCCGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGCGGCTGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTGATGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCGACCTGTTCTCCGGCGGGCTCGGCGGCGGCGTGCCCCCCGCGTCGAAGGCGGCGATCGCCTCGCTGAAGGAGGTGAAGGCCGGGGAGGACGGCGAAGGCGGGGACTCGCTGGGCGACTGCGCGATCTGCCTGGACGCCTTCGCCGCCGGGAAGGAGATGCCGTGCGGGCACCGGTTCCACAGCGAGTGCCTAGAGCGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCAGCGGCGGAACAACAACCACCAGAGGAGCAGCAGAGCGGCGGCGCGGACGCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAGCTACGTGGTGCTCGGAGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGATTAGGACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTTCTTTCGGTTTTTGTATATACACTACTAGCTGCGAGGGGAGAAAAATCGATTGTGAATATTTTTTAAATGTGGAAAATGAAAGTA] [+] EMBL AK120260 [CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTCCGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGCGGCTGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTGATGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCGACCTGTTCTCCGGCGGGCTCGGCGGCGGCGTGCCCCCCGCGTCGAAGGCGGCGATCGCCTCGCTGAAGGAGGTGAAGGCCGGGGAGGACGGCGAAGGCGGGGACTCGCTGGGCGACTGCGCGATCTGCCTGGACGCCTTCGCCGCCGGGAAGGAGATGCCGTGCGGGCACCGGTTCCACAGCGAGTGCCTAGAGCGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCAGCGGCGGAACAACAACCACCAGAGGAGCAGCAGAGCGGCGGCGCGGACGCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAGCTACGTGGTGCTCGGAGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGATTAGGACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTTCTTTCGGTTTTTGTATATACACTACTAGCTGCGAGGGGAGAAAAATCGATTGTGAATATTTTTTAAATGTGGAAAATGAAAGTA] [+] EMBL C29177 [ TAGTTNATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTCCGCCGGCNACGATGGCCACGGCGAACGGCGTCGACCTCGCNACGGCGGGGCTCCTGCGGCTGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTNATGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCNACCTGTTCTCCGGCGGGCTCGGCGNCGGCGTGCCCCCCGCTTCGAAGGCGGCGATCG TTCGCT ] consensusID : consensus_3994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [TGGCGCGGCGCTCTCTCTCTTTTCCCCGCCGACGATGCCCACGGCGACGGCGTCGACCTCGCGACGCGGGGCTCCTGCAGGCTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTCCAGGCAGAAGTGCGTGGGTTCTCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGACGGACGCACGACCTGTTCTCCGGCGGGCTCGCGCGGCGTGCCACCCCGCGTCAGAAGGCGGCAGATCGCCTCGCATGAAGGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTCAGCTGGCGCGACTGCGCGATCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCCGTCGCAGGGACACACGGTTCCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAGGAGCAGCAGAACGGCGGCGCGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGGTGAGCTACGTGGTGCT] [+] EMBL BI796117 [TGGCGCGGCGCTCTCTCTCTTTTCCCCGCCGACGATGCCCACGGCGACGGCGTCGACCTCGCGACGCGGGGCTCCTGCAGGCTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTCCAGGCAGAAGTGCGTGGGTTCTCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGACGGACGCACGACCTGTTCTCCGGCGGGCTCGCGCGGCGTGCCACCCCGCGTCAGAAGGCGGCAGATCGCCTCGCATGAAGGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTCAGCTGGCGCGACTGCGCGATCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCCGTCGCAGGGACACACGGTTCCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAGGAGCAGCAGAACGGCGGCGCGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGGTGAGCTACGTGGTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3994#0 CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTC 60 consensus_3994#1 -------------------------------------TGGCGCGGCGCTCTCTCTCTTTT 23 **** ** ********** * consensus_3994#0 CGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGC-GG 119 consensus_3994#1 CCCCGCCGACGATGCCCACGGCGA-CGGCGTCGACCTCGCGACG-CGGGGCTCCTGCAGG 81 * *** ******** ********* ******************* ************ ** consensus_3994#0 CTGCTGGCGATGGG-GATGGGGCCGTCCG-TGCAGATTCCGGG-AGAAG---GCGGGGTT 173 consensus_3994#1 CTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTCCAGGCAGAAGTGCGTGGGTTC 141 ****** ******* ****** ****** ********** ** ***** * *** * consensus_3994#0 CCGGTGATGATGGTGCAGCACATCATCATCG-GCGACGACGGCGGC--GACCTGTTCTCC 230 consensus_3994#1 TCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGACGGACGCACGACCTGTTCTCC 201 ** ****** * **************** ********** ** ************ consensus_3994#0 GGCGGGCTCGGCGGCGGCGTGCC-CCCCGCGTC-GAAGGCGGC-GATCGCCTCGC-TGAA 286 consensus_3994#1 GGCGGGCTCGC--GCGGCGTGCCACCCCGCGTCAGAAGGCGGCAGATCGCCTCGCATGAA 259 ********** ********** ********* ********* *********** **** consensus_3994#0 GGAG-GTGAAGGCCGGGGAGGACG-GCGAAGGCGGGGACTC-GCTGG-GCGACTGCGCGA 342 consensus_3994#1 GGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTCAGCTGGCGCGACTGCGCGA 319 **** ******************* **************** ***** ************ consensus_3994#0 TCTGCCTGGACGCCTTC--GCCGCC-GGGAAGGAGA-TGCCGT-GCGGGCAC---CGGTT 394 consensus_3994#1 TCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCCGTCGCAGGGACACACGGTT 379 ************** * ****** ********** ****** ** ** ** ***** consensus_3994#0 CCACAGCGAGTGC----CTAGAGC-GGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGC 449 consensus_3994#1 CCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGC 439 ********** * *** * *********************************** consensus_3994#0 CGCCGCGAGCTCCCAGCGGCGGA-ACAA-CAACCACCAGAGGAGCAGCAGAGCGGCGGCG 507 consensus_3994#1 CGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAGGAGCAGCAGAACGGCGGCG 499 ************** ******* **** ********************** ******** consensus_3994#0 CGGAC--GCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAGCTACGTGGTGCTCGG 565 consensus_3994#1 CGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGGTGAGCTACGTGGTGCT--- 556 *** ************************ ***** ******************* consensus_3994#0 AGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGA 625 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 TTAGGACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTT 685 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 CTTTCGGTTTTTGTATATACACTACTAGCTGCGAGGGGAGAAAAATCGATTGTGAATATT 745 consensus_3994#1 ------------------------------------------------------------ consensus_3994#0 TTTTAAATGTGGAAAATGAAAGTA 769 consensus_3994#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||