cluster # 3999

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Oryza sativa
cluster # 3999 cluster # 3999 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3999#0 length = 1576 sequences # 3
consensusID : consensus_3999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1576
fasta sequence
                              [CTGCCATTGTCGCTGCTGCACAGCTTGCGGACCGCTACATTACCGGTCGTCAATTTCCTGACAAGGCGATTGATCTGATTGATGAGGCTTGCTCCACCGTAAGGCTGAAGATTGATAGTCAAAAAGGGGTGAACACCACAGGAATGCAAAATAACAATGGAAATACGTCAGTGAATGGAGTGAACGAAGCAATTGTTGGCCCAGATCATGTTGCTCAAGTTGTGAGCCGATGGACTGGCATCCCGGTCACTACACTTGATCAAGAGGAGAAGGAGAAGTTAATCCACCTGGCAGACAGATTGCACGAGCGAGTTGTTGGCCAGGATGAAGCTGTCAAACTGGTTGCACAGGCAGTTTTACGTTCTAGGGCAGGCCTTGAACAACCTGGCCAACCTATAGGCTCTTTCCTCTTTCTGGGCTCAACCGGTGTTGGAAAGACGGAGCTTGCAAAAGCCCTTGCTGAGCAGCTATTTGACAGCGAGAAGATGTTGATCCGCTTTGACATGTCTGAATTTGTTGGGAGTGGATCTGTGTTGCGTCTCATTGGAGCACCTCCAAGCTATCATGGCCATCAAGATGGCGGACAATTGACAGAAAAAGTTAGGACGCGTCCTTACAGTGTCATCCTTTTTGATGAGGTGGAGAAGGCAGATCCCTCGGTGTTCAACGTGTTCCTTCAGCTCCTCGATGATGGCATGTTGACTGATGGCAAAGGAAGGACAGTAGATTTCAAGAACACCATCATCATTATGACCTCAAATCTGGGAGCTGAGCACCTAACTGAAGGAGTGACTGGTGAAAGAACAATGGAAGCTGCACGGGACCTTGTTATGAAACAAGTTCAGAAGTATTTCAGGCCTGAACTTCTCAACAGGCTGAGTGAGATTGTGATATTTGAGCCGCTTTCGCACGACAATCTTAAGGAGGTCGTCAAAATTCAGATGAAGAGTGTCGTTACCAGTGTGGCTCACAAGG-GCGTATCTCTACTTGCAAGTGATGATGCCTTGGAC-GTCATCTTGTCTGAATCATACAACCCAATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTATTTCCATTGACGCTACTGATGACAAGAAGGGGCTGAACTTTCAAGTATTGAAGGAGGAGGTAGTGGTTCCGCGAGGCAAGAGGCCAGTCGAGGAGCTTCAAAGCGACTCGGATAGCGATGACGATGTGTTCGAGATCG-CCCCCATACCAAAGAGGAAGAAAGGTGATTATTAGCATATAGGAGCAGCCTGACAAGTAGCTAGGTTGCCACTTTTGGGTTATCCATATTATATTAGTGAATTGCAACAT-GGTAGTATCTCCTTTAGCTTGAACTTATGCCGGTTTTAGCCAGTGGGCGTTGTGTCTGTGAGAACTCGCGACTCATATGGTAAGGAGGGC-TGCTTGCTTGCTTGCATCGGCTTTCCTCCATGA-CGCTGTAA--GAGCTGAATGAGACGA-CCTGA-TGTCCTTAATGCATGGTA-CTTTTAAATGNCTTTGGGGTC]

[+] EMBL AK064436             [CTGCCATTGTCGCTGCTGCACAGCTTGCGGACCGCTACATTACCGGTCGTCAATTTCCTGACAAGGCGATTGATCTGATTGATGAGGCTTGCTCCACCGTAAGGCTGAAGATTGATAGTCAAAAAGGGGTGAACACCACAGGAATGCAAAATAACAATGGAAATACGTCAGTGAATGGAGTGAACGAAGCAATTGTTGGCCCAGATCATGTTGCTCAAGTTGTGAGCCGATGGACTGGCATCCCGGTCACTACACTTGATCAAGAGGAGAAGGAGAAGTTAATCCACCTGGCAGACAGATTGCACGAGCGAGTTGTTGGCCAGGATGAAGCTGTCAAACTGGTTGCACAGGCAGTTTTACGTTCTAGGGCAGGCCTTGAACAACCTGGCCAACCTATAGGCTCTTTCCTCTTTCTGGGCTCAACCGGTGTTGGAAAGACGGAGCTTGCAAAAGCCCTTGCTGAGCAGCTATTTGACAGCGAGAAGATGTTGATCCGCTTTGACATGTCTGAATTTGTTGGGAGTGGATCTGTGTTGCGTCTCATTGGAGCACCTCCAAGCTATCATGGCCATCAAGATGGCGGACAATTGACAGAAAAAGTTAGGACGCGTCCTTACAGTGTCATCCTTTTTGATGAGGTGGAGAAGGCAGATCCCTCGGTGTTCAACGTGTTCCTTCAGCTCCTCGATGATGGCATGTTGACTGATGGCAAAGGAAGGACAGTAGATTTCAAGAACACCATCATCATTATGACCTCAAATCTGGGAGCTGAGCACCTAACTGAAGGAGTGACTGGTGAAAGAACAATGGAAGCTGCACGGGACCTTGTTATGAAACAAGTTCAGAAGTATTTCAGGCCTGAACTTCTCAACAGGCTGAGTGAGATTGTGATATTTGAGCCGCTTTCGCACGACAATCTTAAGGAGGTCGTCAAAATTCAGATGAAGAGTGTCGTTACCAGTGTGGCTCACAAGG GCGTATCTCTACTTGCAAGTGATGATGCCTTGGAC GTCATCTTGTCTGAATCATACAACCCAATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTATTTCCATTGACGCTACTGATGACAAGAAGGGGCTGAACTTTCAAGTATTGAAGGAGGAGGTAGTGGTTCCGCGAGGCAAGAGGCCAGTCGAGGAGCTTCAAAGCGACTCGGATAGCGATGACGATGTGTTCGAGATCG CCCCCATACCAAAGAGGAAGAAAGGTGATTATTAGCATATAGGAGCAGCCTGACAAGTAGCTAGGTTGCCACTTTTGGGTTATCCATATTATATTAGTGAATTGCAACAT GGTAGTATCTCCTTTAGCTTGAACTTATGCCGGTTTTAGCCAGTGGGCGTTGTGTCTGTGAGAACTCGCGACTCATATGGTAAGGAGGGC TGCTTGCTTGCTTGCATCGGCTTTCCTCCATGA CGCTGTAA  GAGCTGAATGAGACGA CCTGA TGTCCTTAATGCA                           ]
[+] EMBL CA766238             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAGAACAATGGAAGCTGCACGGGACCTTGTTATGAAACAAGTTCAGAAGTATTTCAGGCCTGAACTTCTCAACAGGCTGAGTGAGATTGTGATATTTGAGCCGCTTTCGCACGACAATCTTAAGGAGGTCGTCAAAATTCAGATGAAGAGTGTCGTTACCAGTGTGGCTCACAAGG GCGTATCTCTACTTGCAAGTGATGATGCCTTGGAC GTCATCTTGTCTGAATCATACAACCCAATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTATTTCCATTGACGCTACTGATGACAAGAAGGGGCTGAACTTTCAAGTATTGAAGGAGGAGGTAGTGGTTCCGCGAGGCAAGAGGCCAGTCGAGGAGCTTCAAAGCGACTCGGATAGCGATGACGATGTGTTCGAGATCGCCCCCCATACCAAAGAGGAAGAAAGGTGATTATTAGCATATAGGAGCAGCCTGACAAGTAGCTAGGTTGCCACTTTTGGGTTATCCATATTATATTAGTGAATTGCAACATGGGTAGTATCTCCTTTAGCTTGAACTTATGCCGGNTTTAGCCAGTGGGCGTTGTGTCNGTGAGAACTCGCGACTCATATGGTAAGGANGGCTTGCTTGCTTGCTTGCCTCGGCTTTTCTTCATGACCCCTNTAAANAAGCTGAATGANACCACCCTGANGGCCCTTAANGCATGGTACCTTTTAAATGNCTTTGGGGTC]
[-] EMBL CA762839             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGAGTGAGATTGTGATATTTGACCCCCTTTCCCACGACACTCTTAGGGAGGTCGTCAAAATTCAGATGAAGAGTGTCGCTACCGGTGTGGCTCACAAGGCGCGTATCTCTCCTTGCAAGTGATGATGCCTTGGACGGTCATCTCGTCTGAATCATCCAACCCAATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTATTTCCATTGACGCTACTGATGACAAGAAGGGGCTGAACTTTCAAGTATTGAAGGAGGAGGTAGTGGTTCCGCGAGGCAAGAGGCCAGTCGAGGAGCTTCAAAGCGACTCGGATAGCGATGACGATGTGTTCGAGATCG CCCCCATACCAAAGAGGAAGAAAGGTGATTATTAGCATATAGGAGCAGCCTGACAAGTAGCTAGGTTGCCACTTTTGGGTTATCCATATTATATTAGTGAATTGCAACAT GGTAGTATCTCCTTTAGCTTGAACTTATGCCGGTTTTAGCCAGTGGGCGTTGTGTCTGTGAGAACTCGCGACTCATATGGTAAGGAGGGC TGCTTGCTTGCTTGCATCGGCTTTCCTCCATGA CGCTGTAA  GAGCTGAATGAGACGA CCTGA TGTCCTTAATGCATGTTA CTTTTAA              ]




>consensus_3999#0
CTGCCATTGTCGCTGCTGCACAGCTTGCGGACCGCTACATTACCGGTCGTCAATTTCCTG
ACAAGGCGATTGATCTGATTGATGAGGCTTGCTCCACCGTAAGGCTGAAGATTGATAGTC
AAAAAGGGGTGAACACCACAGGAATGCAAAATAACAATGGAAATACGTCAGTGAATGGAG
TGAACGAAGCAATTGTTGGCCCAGATCATGTTGCTCAAGTTGTGAGCCGATGGACTGGCA
TCCCGGTCACTACACTTGATCAAGAGGAGAAGGAGAAGTTAATCCACCTGGCAGACAGAT
TGCACGAGCGAGTTGTTGGCCAGGATGAAGCTGTCAAACTGGTTGCACAGGCAGTTTTAC
GTTCTAGGGCAGGCCTTGAACAACCTGGCCAACCTATAGGCTCTTTCCTCTTTCTGGGCT
CAACCGGTGTTGGAAAGACGGAGCTTGCAAAAGCCCTTGCTGAGCAGCTATTTGACAGCG
AGAAGATGTTGATCCGCTTTGACATGTCTGAATTTGTTGGGAGTGGATCTGTGTTGCGTC
TCATTGGAGCACCTCCAAGCTATCATGGCCATCAAGATGGCGGACAATTGACAGAAAAAG
TTAGGACGCGTCCTTACAGTGTCATCCTTTTTGATGAGGTGGAGAAGGCAGATCCCTCGG
TGTTCAACGTGTTCCTTCAGCTCCTCGATGATGGCATGTTGACTGATGGCAAAGGAAGGA
CAGTAGATTTCAAGAACACCATCATCATTATGACCTCAAATCTGGGAGCTGAGCACCTAA
CTGAAGGAGTGACTGGTGAAAGAACAATGGAAGCTGCACGGGACCTTGTTATGAAACAAG
TTCAGAAGTATTTCAGGCCTGAACTTCTCAACAGGCTGAGTGAGATTGTGATATTTGAGC
CGCTTTCGCACGACAATCTTAAGGAGGTCGTCAAAATTCAGATGAAGAGTGTCGTTACCA
GTGTGGCTCACAAGGGCGTATCTCTACTTGCAAGTGATGATGCCTTGGACGTCATCTTGT
CTGAATCATACAACCCAATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATG
TGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTATTT
CCATTGACGCTACTGATGACAAGAAGGGGCTGAACTTTCAAGTATTGAAGGAGGAGGTAG
TGGTTCCGCGAGGCAAGAGGCCAGTCGAGGAGCTTCAAAGCGACTCGGATAGCGATGACG
ATGTGTTCGAGATCGCCCCCATACCAAAGAGGAAGAAAGGTGATTATTAGCATATAGGAG
CAGCCTGACAAGTAGCTAGGTTGCCACTTTTGGGTTATCCATATTATATTAGTGAATTGC
AACATGGTAGTATCTCCTTTAGCTTGAACTTATGCCGGTTTTAGCCAGTGGGCGTTGTGT
CTGTGAGAACTCGCGACTCATATGGTAAGGAGGGCTGCTTGCTTGCTTGCATCGGCTTTC
CTCCATGACGCTGTAAGAGCTGAATGAGACGACCTGATGTCCTTAATGCATGGTACTTTT
AAATGNCTTTGGGGTC
clustalw multiple alignements is not computed in this case