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Oryza sativa
cluster # 4015 cluster # 4015       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4015#0 length = 1983 sequences # 3  

consensusID : consensus_4015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1983
fasta sequence
                              [CACTCCCCCTTCGCGATCTCCTCCGCTCCAAAATGTGGCGCCGCCACCTCCTCCGCCGCCTCCTGCCGTCTCCGGCCACCGCCGCCGCCGCCGCCGCCTCCCCCTCGCCGGCGATCCGCCTCCTATCCACCGCCTCCCCGGATCCCGCCCCGCCGGCGACGCTCGCCTCCTCCCTCGCCGGGGCGCTCTCCGCGCTGTCCTCCACCCCGCCACCGGCCACCTCCCCGGACGCCTACTTCTCCCTCCACTTCTCCGACGTGCGCCCCACCAACGCGCTGCTCGCCGAGGCGCTCGCGCTCGCCCCGCCGGCCACGTCCCGCGCCGCCGCGGAGCTCTTCCGCTTCCTCGTCCGCCGCCGCTCGCTCCACCCCTCCGACTCCGCGCTCGCGCCCGTCGTGCGGCATCTCGCCCGCCGCCGCGACTTCCCCGCGGTGCGCTCGCTCGTCCAGGAGTTCCCCTCCGCGCTGGGGCACGACACGCTCGACGCGTACCTCCTCAGCCTCGCCAGGGCCGGCCGCGCCACCGACGCGGTCAAGGTGTTCGACGAATTGCCCCCGCAGCTCCGCACGCGCCAGGCGCTCACTTCCCTGGTCTCCTCGCTCTCGGCTGAGGGCTGGCCCTCGCACGCGGAAGGCGCTGTCAAGAAGGTCGCTAATGAGATCTTCCCGGATGATAACATCTGCACTCTGTTGGTATCTGGCTATGCCAATGCTGGGAAGCTTGACCATGCTCTGAGGTTGATCGGTGAGACGCGCCGTGGTGGGTTTCAGCCAGGGTTGGACGCCTACAACGCGGTTCTTGATTGTATCTGCCGGCTATGTCGCAAGAAGGACCCGTTGAGGATGCCTGCGGAGGCAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGCGATGCAGGTACTTTCCGGGTTCTGATCACTAATCTTTGCAAGATTCGCAAGACTGAGGATGCAATGAATCTGTTCCGGCGAATGGGTGAGTGGGGATGCTCACCAGATGCCGACACCTACTTGGTGCTTATTAAGAGCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGATGAGATGATGACATGGATGCGGTCTGCAGGGTTTGGTGCTAAGCTTGATAGAAAGGCATATTATGGGTTCATCAAGATTTTATGTGGCATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCAGGATGATGAAAGGATATGGACATGCACCTGGGACAAAGTCATATAGCTTGCTGATTGAGAAGCTGACTAGGCATAACTTAGGAGATCGTGCTAATGCACTGTTCAGGGAAGCAGTGGCACGTGGTGTGACTGTGACGCCAGGAGTGTATAAGATTGATAAGAAGTATGTGAAGGCGAAGAAGGAGAAGAAGGTAAAGAAGAGGCTGACTTTACCAGAGAA-GATGAGATTGAAGAGCAAGAGGCTGTACAAGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGAGCAGGCTTTGGGTTGGAGCGGATGATCATGGGAAGAGAGAATCAGAAAGAGGCCATTTATAATTTTGAAGAGCAGTAAATTGTCGTCCTTCAATTTTCCCCACA-TTACGAGTGGCTCACTGACCGCAAC-A-TTTTCTGATCGGAGTCCTTCGTGTGGTTTCTATCTCTTGGACAATGGATTGCTGACACTTTGCTGTGCTGTTTTATGTTCTCTGCAATGCCTT-GTGTTTCATTAACACAAATAATGAATGTATCA-TTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGGTATATGATGAAGCAACTGTCTTGCAGATCCGTAGTTATCGTTTGAGCAATGTTTTGTACA-CTCTAGTTTCTCATGAACTCATGAAATATTTTATAAAAAGCCTGCCGAAACTACTCATTTGACCTTTTTCTTTGGGTGAGAATGTGCTCCCCAAAAGAGCTTGAATGCATGAGCTTGATCAAAAAAAAAA]

[+] EMBL AK063924             [CACTCCCCCTTCGCGATCTCCTCCGCTCCAAAATGTGGCGCCGCCACCTCCTCCGCCGCCTCCTGCCGTCTCCGGCCACCGCCGCCGCCGCCGCCGCCTCCCCCTCGCCGGCGATCCGCCTCCTATCCACCGCCTCCCCGGATCCCGCCCCGCCGGCGACGCTCGCCTCCTCCCTCGCCGGGGCGCTCTCCGCGCTGTCCTCCACCCCGCCACCGGCCACCTCCCCGGACGCCTACTTCTCCCTCCACTTCTCCGACGTGCGCCCCACCAACGCGCTGCTCGCCGAGGCGCTCGCGCTCGCCCCGCCGGCCACGTCCCGCGCCGCCGCGGAGCTCTTCCGCTTCCTCGTCCGCCGCCGCTCGCTCCACCCCTCCGACTCCGCGCTCGCGCCCGTCGTGCGGCATCTCGCCCGCCGCCGCGACTTCCCCGCGGTGCGCTCGCTCGTCCAGGAGTTCCCCTCCGCGCTGGGGCACGACACGCTCGACGCGTACCTCCTCAGCCTCGCCAGGGCCGGCCGCGCCACCGACGCGGTCAAGGTGTTCGACGAATTGCCCCCGCAGCTCCGCACGCGCCAGGCGCTCACTTCCCTGGTCTCCTCGCTCTCGGCTGAGGGCTGGCCCTCGCACGCGGAAGGCGCTGTCAAGAAGGTCGCTAATGAGATCTTCCCGGATGATAACATCTGCACTCTGTTGGTATCTGGCTATGCCAATGCTGGGAAGCTTGACCATGCTCTGAGGTTGATCGGTGAGACGCGCCGTGGTGGGTTTCAGCCAGGGTTGGACGCCTACAACGCGGTTCTTGATTGTATCTGCCGGCTATGTCGCAAGAAGGACCCGTTGAGGATGCCTGCGGAGGCAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGCGATGCAGGTACTTTCCGGGTTCTGATCACTAATCTTTGCAAGATTCGCAAGACTGAGGATGCAATGAATCTGTTCCGGCGAATGGGTGAGTGGGGATGCTCACCAGATGCCGACACCTACTTGGTGCTTATTAAGAGCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGATGAGATGATGACATGGATGCGGTCTGCAGGGTTTGGTGCTAAGCTTGATAGAAAGGCATATTATGGGTTCATCAAGATTTTATGTGGCATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCAGGATGATGAAAGGATATGGACATGCACCTGGGACAAAGTCATATAGCTTGCTGATTGAGAAGCTGACTAGGCATAACTTAGGAGATCGTGCTAATGCACTGTTCAGGGAAGCAGTGGCACGTGGTGTGACTGTGACGCCAGGAGTGTATAAGATTGATAAGAAGTATGTGAAGGCGAAGAAGGAGAAGAAGGTAAAGAAGAGGCTGACTTTACCAGAGAA GATGAGATTGAAGAGCAAGAGGCTGTACAAGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGAGCAGGCTTTGGGTTGGAGCGGATGATCATGGGAAGAGAGAATCAGAAAGAGGCCATTTATAATTTTGAAGAGCAGTAAATTGTCGTCCTTCAATTTTCCCCACA TTACAAGTGGCTCACTGACCGCAAC ATTTTTCTGATCGGAGTCCTTCGTGTGGTTTCTATCTCTTGGACAATGGATTGCTGACACTTTGCTGTGCTGTTTTATGTTCTCTGCAATGCCTT GTGTTTCATTAACACAAATAATGAATGTATCA TTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGGTATATGATGAAGCAACTGTCTTGCAGATCCGTAGTTATCGTTTGAGCAATGTTTTGTACA CTCTAGTTTCTCATGAACTCATGA                                                                                                          ]
[+] EMBL BM038367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGTGAAGCCGAAGAAGGAGAAGAAGGTAAAGAAGA GCTGACTTTACCAGAGAA GATGAGATTGAAGACCAAGAGCCTGTACAAGCTTAGAATGA CTTT TTAAGAACCCTAAGCGTCGAATGGTCC GGTTTGA CA GCTTTGGGTTGGACCGGATGATCATGGGAAGAGAGAATCAGAAAGA GCCATTTATAATTTTGAAGA CAGTAAATTGTCGTCCTTC ATTTTCCCCACACTTACGAGTGGCTCACTGACC CAAC A TTTTCTGATCGGAGTCCTTCGTGT GTTTCTATCTCTTGGACCATGGATTGCTGACACTTTGCTGTGCTGTTTTATGTTCTCT CCATCCCTTCGTGTTTCATTAACACAAATAATGAATGTATCACTTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGGTATATGATGAA C ACTGTCTT CAGATCCGTAGTTATCGTTTGA C ATGTTTTGTACACCTCTAGTTTCTCATGAACTCATGAAATATTTTATAAAAA                                                                                           ]
[-] EMBL CA761884             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACGAGACAAGGGGGAGATTGAAGAGCAAGAGGCTGTACAAGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGAGCAGGCTTTGGGTTGGAGCGGATGATCATGGGAAGAGAGAATCAGAAAGAGGCCATTTATAATTTTGAAGAGCAGTAAATTGTCGTCCTTCAATTTTCCCCACA TTACGAGTGGCTCACTGACCGCAACAA TTTTCTGATCGGAGTCCTTCGTGTGGTTTCTATCTCTTGGACAATGGATTGCTGACACTTTGCTGTGCTGTTTTATGTTCTCTGCAATGCCTT GTGTTTCATTAACACAAATAATGAATGTATCA TTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGGTATATGATGAAGCAACTGTCTTGCAGATCCGTAGTTATCGTTTGAGCAATGTTTTGTACA CTCTAGTTTCTCATGAACTCATGAAATATTTTATACATCGCCTGCCGAAACTACTCATTTGACCTTTTTCTTTGGGTGAGAATGTGCTCCCCAAAAGAGCTTGAATGCATGAGCTTGATCAAAAAAAAAA]


>consensus_4015#0 CACTCCCCCTTCGCGATCTCCTCCGCTCCAAAATGTGGCGCCGCCACCTCCTCCGCCGCC TCCTGCCGTCTCCGGCCACCGCCGCCGCCGCCGCCGCCTCCCCCTCGCCGGCGATCCGCC TCCTATCCACCGCCTCCCCGGATCCCGCCCCGCCGGCGACGCTCGCCTCCTCCCTCGCCG GGGCGCTCTCCGCGCTGTCCTCCACCCCGCCACCGGCCACCTCCCCGGACGCCTACTTCT CCCTCCACTTCTCCGACGTGCGCCCCACCAACGCGCTGCTCGCCGAGGCGCTCGCGCTCG CCCCGCCGGCCACGTCCCGCGCCGCCGCGGAGCTCTTCCGCTTCCTCGTCCGCCGCCGCT CGCTCCACCCCTCCGACTCCGCGCTCGCGCCCGTCGTGCGGCATCTCGCCCGCCGCCGCG ACTTCCCCGCGGTGCGCTCGCTCGTCCAGGAGTTCCCCTCCGCGCTGGGGCACGACACGC TCGACGCGTACCTCCTCAGCCTCGCCAGGGCCGGCCGCGCCACCGACGCGGTCAAGGTGT TCGACGAATTGCCCCCGCAGCTCCGCACGCGCCAGGCGCTCACTTCCCTGGTCTCCTCGC TCTCGGCTGAGGGCTGGCCCTCGCACGCGGAAGGCGCTGTCAAGAAGGTCGCTAATGAGA TCTTCCCGGATGATAACATCTGCACTCTGTTGGTATCTGGCTATGCCAATGCTGGGAAGC TTGACCATGCTCTGAGGTTGATCGGTGAGACGCGCCGTGGTGGGTTTCAGCCAGGGTTGG ACGCCTACAACGCGGTTCTTGATTGTATCTGCCGGCTATGTCGCAAGAAGGACCCGTTGA GGATGCCTGCGGAGGCAGAGAAGTTCTTAGTTGACATGGAGGCCAATGGCATTCCCCGCG ATGCAGGTACTTTCCGGGTTCTGATCACTAATCTTTGCAAGATTCGCAAGACTGAGGATG CAATGAATCTGTTCCGGCGAATGGGTGAGTGGGGATGCTCACCAGATGCCGACACCTACT TGGTGCTTATTAAGAGCTTGTATCAGGCTGCCCGGATTTCTGAAGGGGATGAGATGATGA CATGGATGCGGTCTGCAGGGTTTGGTGCTAAGCTTGATAGAAAGGCATATTATGGGTTCA TCAAGATTTTATGTGGCATTGAAAGGGTTGAGCATGCTGTCAAGGTGTTCAGGATGATGA AAGGATATGGACATGCACCTGGGACAAAGTCATATAGCTTGCTGATTGAGAAGCTGACTA GGCATAACTTAGGAGATCGTGCTAATGCACTGTTCAGGGAAGCAGTGGCACGTGGTGTGA CTGTGACGCCAGGAGTGTATAAGATTGATAAGAAGTATGTGAAGGCGAAGAAGGAGAAGA AGGTAAAGAAGAGGCTGACTTTACCAGAGAAGATGAGATTGAAGAGCAAGAGGCTGTACA AGCTTAGAATGAGCTTTGTTAAGAAGCCTAAGCGTCGAATGGTCCGGGTTTGAGCAGGCT TTGGGTTGGAGCGGATGATCATGGGAAGAGAGAATCAGAAAGAGGCCATTTATAATTTTG AAGAGCAGTAAATTGTCGTCCTTCAATTTTCCCCACATTACGAGTGGCTCACTGACCGCA ACATTTTCTGATCGGAGTCCTTCGTGTGGTTTCTATCTCTTGGACAATGGATTGCTGACA CTTTGCTGTGCTGTTTTATGTTCTCTGCAATGCCTTGTGTTTCATTAACACAAATAATGA ATGTATCATTTTACTTAAGTTTATGTTCACCACAGTTGAGAGGAAACTTTTGGTATATGA TGAAGCAACTGTCTTGCAGATCCGTAGTTATCGTTTGAGCAATGTTTTGTACACTCTAGT TTCTCATGAACTCATGAAATATTTTATAAAAAGCCTGCCGAAACTACTCATTTGACCTTT TTCTTTGGGTGAGAATGTGCTCCCCAAAAGAGCTTGAATGCATGAGCTTGATCAAAAAAA AAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)