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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1566 fasta sequence
[TCTCAATGGCGATGTCGAGCTGAGCACCACCCTAGCGGTGGAGTAGGGGAGCTGTGGTCGGCGGCGGCCGCCGCCAGTTGGGTGTCTCGGAGTGAGACCGGGAGAGGCGGCGGAGGGAGCTCAGGGAGGGAGGGAGGAGGGGCGGCGATGGTGGGCGGAGGGGCGCTGCGGCGGGTGGGGAAGTACGAGGTGGGGCGGACGATCGGGGAGGGGACGTTCGCCAAGGTGAAGTTCGCGCAGAACACGGAGAGCGGGGAGAGCGTCGCCATGAAGGTGGTCGACCGCTCCTCCATCCTCAAGCACAAGATGGCGGATCAGATTAAGAGAGAGATATCTATAATGAAGCTTGTGAGGCATCCGAATGTGGTTAGACTACACGAAGTCTTGGCAAGCCGGAAGAAGATATTTATAATCTTGGAGTTCATCACTGGCGGTGAACTATTTGATAAAATAATTCGTCATGGAAGACTCAATGAAGCTGATGCACGCAGATACTTTCAGCAGCTCATTGATGGTGTTGATTTTTGTCACAGCAAAGGTGTCTACCATCGAGATTTAAAGCCCGAAAATCTCCTCCTTGATTCCCAAGGAAATCTTAAAATATCAGACTTTGGACTCAGCGCCTGGCCTGCTCAGGGTGGTGCCCTTTTACGTACTACCTGTGGAACCCCAAATTATGTTGCCCCAGAGGTTCTCAGTCATAAAGGATATGATGGAGCACTTGCTGATACATGGTCATGTGGAGTTATTCTATATGTCCTGTTGGCAGGTTATCTTCCATTTGATGAAGTTGATTTGACTACCCCTTTACGGGAAGATAGAGAGTGCAGAATATTCATTCCCAGCTTGGTTTCCTAATGGTGCCAAGTCACTTATTCACAGAATTCTTGACCCTAATCCAGATAAAAGAATCAGGATAGAAGAGATCAGGAATGATGAATGGTTTAAGAAGAATTATGAACCTACCAGAGAAATTGAAAGTGAAGAAGTCAATCTTGATGATGTCAATGCAGCTTTTGATGATCCTGAGGAAGACGCTGACCATACTTTAGATGACGAAGCAGGACCTTTGACACTCAATGCATTCGACCTAATAATTCTATCTCAAGGCTTGAACCTTGCAGCACTATTTGATCGCCGACAGGACTATGACAAGCTTCAAAATAGATTTTTATCACGCAAACCAGCAAAGGTTATCATGTCAAGCATGGAGGTTGTTGCTCAGTCAATGGGGTACAAGACACACATTCGCAATTATAAGATGAGGGTGGAAGGTCTAAATGCAAATAAGACAAGTCATCTCGCAGTTATGCTTGAAATTTTTGAAGTTGCCCCATCGATCTTCATGATTGAACTGCAAAGAGCAGCGGGAGACACCTCCGATTATAACAAGTTTATAAATAATTACTGCAGCAAATTAGACGATATCATTTGGAATTTTCCAATTGAGAAGAGCAAATCAAGGATATCGCGGCTATCGAAGCGCTAGTCTGCTTTGACATCCATCATTTGTACTATGTGTAATCTAATGCTATGCAGCTTGAGTGGTATTGGGTTTGTTAGTGG]
[+] EMBL AK120431 [TCTCAATGGCGATGTCGAGCTGAGCACCACCCTAGCGGTGGAGTAGGGGAGCTGTGGTCGGCGGCGGCCGCCGCCAGTTGGGTGTCTCGGAGTGAGACCGGGAGAGGCGGCGGAGGGAGCTCAGGGAGGGAGGGAGGAGGGGCGGCGATGGTGGGCGGAGGGGCGCTGCGGCGGGTGGGGAAGTACGAGGTGGGGCGGACGATCGGGGAGGGGACGTTCGCCAAGGTGAAGTTCGCGCAGAACACGGAGAGCGGGGAGAGCGTCGCCATGAAGGTGGTCGACCGCTCCTCCATCCTCAAGCACAAGATGGCGGATCAGATTAAGAGAGAGATATCTATAATGAAGCTTGTGAGGCATCCGAATGTGGTTAGACTACACGAAGTCTTGGCAAGCCGGAAGAAGATATTTATAATCTTGGAGTTCATCACTGGCGGTGAACTATTTGATAAAATAATTCGTCATGGAAGACTCAATGAAGCTGATGCACGCAGATACTTTCAGCAGCTCATTGATGGTGTTGATTTTTGTCACAGCAAAGGTGTCTACCATCGAGATTTAAAGCCCGAAAATCTCCTCCTTGATTCCCAAGGAAATCTTAAAATATCAGACTTTGGACTCAGCGCCTGGCCTGCTCAGGGTGGTGCCCTTTTACGTACTACCTGTGGAACCCCAAATTATGTTGCCCCAGAGGTTCTCAGTCATAAAGGATATGATGGAGCACTTGCTGATACATGGTCATGTGGAGTTATTCTATATGTCCTGTTGGCAGGTTATCTTCCATTTGATGAAGTTGATTTGACTACCCCTTTACGGGAAGATAGAGAGTGCAGAATATTCATTCCCAGCTTGGTTTCCTAATGGTGCCAAGTCACTTATTCACAGAATTCTTGACCCTAATCCAGATAAAAGAATCAGGATAGAAGAGATCAGGAATGATGAATGGTTTAAGAAGAATTATGAACCTACCAGAGAAATTGAAAGTGAAGAAGTCAATCTTGATGATGTCAATGCAGCTTTTGATGATCCTGAGGAAGACGCTGACCATACTTTAGATGACGAAGCAGGACCTTTGACACTCAATGCATTCGACCTAATAATTCTATCTCAAGGCTTGAACCTTGCAGCACTATTTGATCGCCGACAGGACTATGACAAGCTTCAAAATAGATTTTTATCACGCAAACCAGCAAAGGTTATCATGTCAAGCATGGAGGTTGTTGCTCAGTCAATGGGGTACAAGACACACATTCGCAATTATAAGATGAGGGTGGAAGGTCTAAATGCAAATAAGACAAGTCATCTCGCAGTTATGCTTGAAATTTTTGAAGTTGCCCCATCGATCTTCATGATTGAACTGCAAAGAGCAGCGGGAGACACCTCCGATTATAACAAGTTTATAAATAATTACTGCAGCAAATTAGACGATATCATTTGGAATTTTCCAATTGAGAAGAGCAAATCAAGGATATCGCGGCTATCGAAGCGCTAGTCTGCTTTGACATCCATCATTTGTACTATGTGTAATCTAATGCTATGCAGCTTGAGTGGTATTGGGTTTGTTAGTGG]
[+] EMBL CA756147 [ TGAGGCATCCGAATGTGGTTAGACTACACGAAGTCTTGGCAAGCCGGAAGAAGATATTTATAATCTTGGAGTTCATCACTGGCGGTGAACTATTTGATAAAATAATTCGTCATGGAAGACTCAATGAAGCTGATGCACGCAGATACTTTCAGCAGCTCATTGATGGTGTTGATTTTTGTCACAGCAAAGGTGTCTACCATCGAGATTTAAAGCCCGAAAATCTCCTCCTTGATTCCCAAGGAAATCTTAAAATATCAGACTTTGGACTCAGCGCCTGGCCTGCTCAGGGTGGTGCCCTTTTACGTACTACCTGTGGAACCCCAAATTATGTTGCCCCAGAGGTTCTCAGTCATAAAGGATATGATGGAGCACTTGCTGATACATGGTCATGTGGAGTTATTCTATATGTCCTGTTGGCAGGTTATCTTCCATTTGATGAAGTTGATTTGACTA CCCTTTACGGGAAGATAGAGAGTGCAGAATATTCATTCCCAGCTTGGTTTCCTAATGGTGCCAAGTCACTTATTCACAGAATTCTTGACCCTNATCCAGATNANAGAATCAGGATAGAAGAGATCAGGAATGATGAATGGTT ]
consensusID : consensus_4020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[TGAAGGTGGTCGACCGCTCCTCCATCCTCAAGCACAAGATGGCGGATCAGGTGAGCCCCCCGTTCGGCTCCATCTATCTCTTCTGTTTTTTTTTCCTTTTTTGTTCTCTCTATTTGCGTGTTGATCAAGAGATTTTGCTGTACTAGCTTAGCTTGGGAATTAATTAGTGTATGCCACGGATTTGTCTAGCGCCTTGAGACACAGAATGGATGAGGGAGATTGTTTAATTCGACCCTCTTTTCATCCTCTTTTGCGCCAATTCTCCTCGGTTTGTCAATGGTGGGTTTGATGCTTCATGTCCATTGGCGTCTAGCTTGCAGCTTCCTTTCCCCACAACAAGTGTTAACAGTGGTGGTACCAGGATTGTTGAATCGAATCGCAATTTTAAACTTCCGCCGAGCAGTTTGTTCTTCTGTATATACCTATTAAGATATTGTTGTTATAAAAA]
[+] EMBL BI795254 [TGAAGGTGGTCGACCGCTCCTCCATCCTCAAGCACAAGATGGCGGATCAGGTGAGCCCCCCGTTCGGCTCCATCTATCTCTTCTGTTTTTTTTTCCTTTTTTGTTCTCTCTATTTGCGTGTTGATCAAGAGATTTTGCTGTACTAGCTTAGCTTGGGAATTAATTAGTGTATGCCACGGATTTGTCTAGCGCCTTGAGACACAGAATGGATGAGGGAGATTGTTTAATTCGACCCTCTTTTCATCCTCTTTTGCGCCAATTCTCCTCGGTTTGTCAATGGTGGGTTTGATGCTTCATGTCCATTGGCGTCTAGCTTGCAGCTTCCTTTCCCCACAACAAGTGTTAACAGTGGTGGTACCAGGATTGTTGAATCGAATCGCAATTTTAAACTTCCGCCGAGCAGTTTGTTCTTCTGTATATACCTATTAAGATATTGTTGTTATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4020#0 TCTCAATGGCGATGTCGAGCTGAGCACCACCCTAGCGGTGGAGTAGGGGAGCTGTGGTCG 60
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 GCGGCGGCCGCCGCCAGTTGGGTGTCTCGGAGTGAGACCGGGAGAGGCGGCGGAGGGAGC 120
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TCAGGGAGGGAGGGAGGAGGGGCGGCGATGGTGGGCGGAGGGGCGCTGCGGCGGGTGGGG 180
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 AAGTACGAGGTGGGGCGGACGATCGGGGAGGGGACGTTCGCCAAGGTGAAGTTCGCGCAG 240
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 AACACGGAGAGCGGGGAGAGCGTCGCCATGAAGGTGGTCGACCGCTCCTCCATCCTCAAG 300
consensus_4020#1 ----------------------------TGAAGGTGGTCGACCGCTCCTCCATCCTCAAG 32
********************************
consensus_4020#0 CACAAGATGGCGGATCAGATTAAGAGAGAGATATCTATAATGAAGCTTGTGAGGCATCCG 360
consensus_4020#1 CACAAGATGGCGGATCAGGTGAGCCCCCCGTTCGGCTCCATCTATCTCTTCTGTTTTTTT 92
****************** * * * * ** * ** * * *
consensus_4020#0 AATGTGGTTAGACTACACGAAGTCTTGGCAAGCCGGAAGAAGATATTTATAATCTTGGAG 420
consensus_4020#1 TTCCTTTTTTGTTCTCTCTA----TTTGCGTGTTG-ATCAAGAGATTT-TGCTGTACTAG 146
* ** * * * * ** ** * * * **** **** * * * **
consensus_4020#0 TTCATCACTGGCGGTGAACTATTTGATAAAATA-ATTCGTCATGGAAGACTCAATGAAGC 479
consensus_4020#1 CTTAGC-TTGGGAATTAATTAGTGTATGCCACGGATTTGTCTAGC--GCCTTGAGACACA 203
* * * *** * ** ** * ** * *** *** * * ** * *
consensus_4020#0 TGATGCACGCAGATACTTTCAGCAGCTCATTGATGGTGTTGATTTTTGTCACAGCAAAGG 539
consensus_4020#1 GAATGGATG-AGGGAGATTGTTTAATTCGACCCTCTTTTCATCCTCTTTTGCGCCAA--- 259
*** * * ** * ** * ** * * * * * * * ***
consensus_4020#0 TGTCTACCATCGAGATTTAAAGCCCGAAAATCTCCTCCTTGATTCCCAAGGAAATCTTAA 599
consensus_4020#1 ---TTCTCCTCGG--TTTGTCAATGGTGGGTTTGATGCTTCATGTCCATTGGCGTCT--A 312
* * *** *** * * * * *** ** *** * *** *
consensus_4020#0 AATATCAGACTTTGGACTCAGCGCCTGGCCTGCTCAGGGTGGTGCCCTTTTACGTACTAC 659
consensus_4020#1 GCTTGCAGCTTCCTTTCCCCACAACAAG--TGTTAACAGTGGTGGTACCAGGATTGTTGA 370
* *** * * * * * * ** * * ****** * *
consensus_4020#0 CTGTGGAACCCCAAATTATGTTGCCCCAGAG--GTTCTCAGTCATAAAGGATATGATGGA 717
consensus_4020#1 AT-CGAATCGCAATTTTAAACTTCCGCCGAGCAGTTTGTTCTTCTGTATATACCTATTAA 429
* * * * * * *** * ** * *** *** * * * ** *
consensus_4020#0 GCACTTGCTGATACATGGTCATGTGGAGTTATTCTATATGTCCTGTTGGCAGGTTATCTT 777
consensus_4020#1 GATATTGTTGTTATAAAAA----------------------------------------- 448
* *** ** ** *
consensus_4020#0 CCATTTGATGAAGTTGATTTGACTACCCCTTTACGGGAAGATAGAGAGTGCAGAATATTC 837
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 ATTCCCAGCTTGGTTTCCTAATGGTGCCAAGTCACTTATTCACAGAATTCTTGACCCTAA 897
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TCCAGATAAAAGAATCAGGATAGAAGAGATCAGGAATGATGAATGGTTTAAGAAGAATTA 957
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TGAACCTACCAGAGAAATTGAAAGTGAAGAAGTCAATCTTGATGATGTCAATGCAGCTTT 1017
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TGATGATCCTGAGGAAGACGCTGACCATACTTTAGATGACGAAGCAGGACCTTTGACACT 1077
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 CAATGCATTCGACCTAATAATTCTATCTCAAGGCTTGAACCTTGCAGCACTATTTGATCG 1137
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 CCGACAGGACTATGACAAGCTTCAAAATAGATTTTTATCACGCAAACCAGCAAAGGTTAT 1197
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 CATGTCAAGCATGGAGGTTGTTGCTCAGTCAATGGGGTACAAGACACACATTCGCAATTA 1257
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TAAGATGAGGGTGGAAGGTCTAAATGCAAATAAGACAAGTCATCTCGCAGTTATGCTTGA 1317
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 AATTTTTGAAGTTGCCCCATCGATCTTCATGATTGAACTGCAAAGAGCAGCGGGAGACAC 1377
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 CTCCGATTATAACAAGTTTATAAATAATTACTGCAGCAAATTAGACGATATCATTTGGAA 1437
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TTTTCCAATTGAGAAGAGCAAATCAAGGATATCGCGGCTATCGAAGCGCTAGTCTGCTTT 1497
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 GACATCCATCATTTGTACTATGTGTAATCTAATGCTATGCAGCTTGAGTGGTATTGGGTT 1557
consensus_4020#1 ------------------------------------------------------------
consensus_4020#0 TGTTAGTGG 1566
consensus_4020#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||