These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2208 fasta sequence [TGTTTCGAAGCCCCCCCCACAACACGGGAACCCCGAATCTCCCCACCTCTCCCCTCCCATTCGACTAGGGTTTTTCTCTAGGGCTTGGGGAACCTCGGCGAGGCGCGTCGGCGATGTCGCTCCGGCCGAGCGAGCGGATGGGGATCCGCCAGAAGGGCTACAAGGCGTCGATGGACGCGGCGGAGGGGCGGCGGCGGCGGGAGGACATCACCGTGATACTCCGCAAGGCCGACCGCGATCGCGCCCTCAAGGAGAAGAGGCGGCGCCCCACGGCCACCGCCGCCGCCGAGGGGTTGCCGCAGGCGGCGCACTCGTCGGCCATCGAGAAGAAGTTGGAGAGCCTGCCGATGATGGTGCAGGGGTTGTACTCGGATGACAGCAGCATGCAGTTGGAGTCGACCACGCAGTTCAGGAAGCTGCTCTCTGTCGACCATTGTCCTCCAATTGATGAGGTGATTAGATCTGGAGTGCTCCCTCGCTTTGTGGAATTCCTCACCAGGGAGGAGTACCCCCAGCTCCAGTTTGAGGCAGCATGGGCTCTCACCAATATTGCTTCAGGAACAGCAGCCAACACAATGGCAGTTATTGAACATGGTGCTGTGCCCATCTTTGTGAAGCTCCTCAGCTCACCAAGAGAGGATGTCCGTGAACAGGCTGTCTGGGCCCTGGGAAATGTGGCTGGGGATTCCACAAAATGCCGTAACCTGGTTCTTATGCATGGTGCAATGTTACCGCTACTGCAGCAGCTCAATGAGCATGCTAAACTCTCGATGCTGAGGAACAGTGCCTGGACCCTTTCTAACTTCTGCCGTGGCAAGCCGCAGCCTGACTTCAAGCATGTTGAACCTGCGCTTCCAGTGCTGCGGGAGCTCATCCTCTCTCAAGATGAGGAGATCCTAACGGACTCATGTTGGGCACTCTCTTACCTGTCAGATGGTTCTAATGACAATATACAAGCTGTGATTGAAACTGGCGTGTGTGATTGGCTTGTTGAGCTCCTTAGCCATCCTTCACCTGTGGTGCTCATTCCTGCTCTCCGCACGGTTGGCAACATTGTAACTGGGGATGATGCGCAGACCCAGTGTATTGTTGGTCATCCCCAAGCACTTCCCTGTCTTTTCAATCTTTTGACAACAACTCAAAAGAAAAGCGTCAAGAGAGAAGCTTGCTGGACAATCTCCAACATCACAGCTGGAACTAAAGAGCAGATTCAGGCTGTGATCGATTCAAACATAATTGCTCCTCTATTGCATCTGTTGCAACATGCTGAGTTTGATGTCAAAAAGGAGGCTGTTTGGGCAATTTCTAATGCCACATCTGGTGGGACATTCAATCAGATAGAGTATCTTGTTAGTCAGGGTTGCATCAAGCCGCTTTGTGATTTACTTGTTCACCAAGATTCCAAAACAGTGTTAACTTGTTTGGAGGCCCTTGATAATATCTTGAGGGTTGGGGAGGCTAAGAAGAACTTGGGGGCTTGTAATATGAACATATTTGTGCCGATGGTTGATGAAGCTGATGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATGTTGAGATATATAATAAGGCAGTTTATGTGCTTGAGTCATACTGGGTGCAGGAGGATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTAAAGGTAAATTTCTATTCACTAATGGTTGGAACTGTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATGCACCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATCGGAGAGTCAAGTTATCCGAGTCATGGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGGTCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGGTTGGTTCATATGGATTATGGTTCTCCACACAAGGGGGTGGGTACTGGAAATTGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCAGTAGCGTAAGCTGGTATGTCTGTGGAGGTAAAAAAAAAAGGGAAAAGACAAAAATACTTGGAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAG] [+] EMBL AK100070 [TGTTTCGAAGCCCCCCCCACAACACGGGAACCCCGAATCTCCCCACCTCTCCCCTCCCATTCGACTAGGGTTTTTCTCTAGGGCTTGGGGAACCTCGGCGAGGCGCGTCGGCGATGTCGCTCCGGCCGAGCGAGCGGATGGGGATCCGCCAGAAGGGCTACAAGGCGTCGATGGACGCGGCGGAGGGGCGGCGGCGGCGGGAGGACATCACCGTGATACTCCGCAAGGCCGACCGCGATCGCGCCCTCAAGGAGAAGAGGCGGCGCCCCACGGCCACCGCCGCCGCCGAGGGGTTGCCGCAGGCGGCGCACTCGTCGGCCATCGAGAAGAAGTTGGAGAGCCTGCCGATGATGGTGCAGGGGTTGTACTCGGATGACAGCAGCATGCAGTTGGAGTCGACCACGCAGTTCAGGAAGCTGCTCTCTGTCGACCATTGTCCTCCAATTGATGAGGTGATTAGATCTGGAGTGCTCCCTCGCTTTGTGGAATTCCTCACCAGGGAGGAGTACCCCCAGCTCCAGTTTGAGGCAGCATGGGCTCTCACCAATATTGCTTCAGGAACAGCAGCCAACACAATGGCAGTTATTGAACATGGTGCTGTGCCCATCTTTGTGAAGCTCCTCAGCTCACCAAGAGAGGATGTCCGTGAACAGGCTGTCTGGGCCCTGGGAAATGTGGCTGGGGATTCCACAAAATGCCGTAACCTGGTTCTTATGCATGGTGCAATGTTACCGCTACTGCAGCAGCTCAATGAGCATGCTAAACTCTCGATGCTGAGGAACAGTGCCTGGACCCTTTCTAACTTCTGCCGTGGCAAGCCGCAGCCTGACTTCAAGCATGTTGAACCTGCGCTTCCAGTGCTGCGGGAGCTCATCCTCTCTCAAGATGAGGAGATCCTAACGGACTCATGTTGGGCACTCTCTTACCTGTCAGATGGTTCTAATGACAATATACAAGCTGTGATTGAAACTGGCGTGTGTGATTGGCTTGTTGAGCTCCTTAGCCATCCTTCACCTGTGGTGCTCATTCCTGCTCTCCGCACGGTTGGCAACATTGTAACTGGGGATGATGCGCAGACCCAGTGTATTGTTGGTCATCCCCAAGCACTTCCCTGTCTTTTCAATCTTTTGACAACAACTCAAAAGAAAAGCGTCAAGAGAGAAGCTTGCTGGACAATCTCCAACATCACAGCTGGAACTAAAGAGCAGATTCAGGCTGTGATCGATTCAAACATAATTGCTCCTCTATTGCATCTGTTGCAACATGCTGAGTTTGATGTCAAAAAGGAGGCTGTTTGGGCAATTTCTAATGCCACATCTGGTGGGACATTCAATCAGATAGAGTATCTTGTTAGTCAGGGTTGCATCAAGCCGCTTTGTGATTTACTTGTTCACCAAGATTCCAAAACAGTGTTAACTTGTTTGGAGGCCCTTGATAATATCTTGAGGGTTGGGGAGGCTAAGAAGAACTTGGGGGCTTGTAATATGAACATATTTGTGCCGATGGTTGATGAAGCTGATGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATGTTGAGATATATAATAAGGCAGTTTATGTGCTTGAGTCATACTGGGTGCAGGAGGATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTAAAGGTAAATTTCTATTCACTAATGGTTGGAACTGTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATGCACCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATCGGAGAGTCAAGTTATCCGAGTCATGGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGGTCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGGTTGGTTCATATGGATTATGGTTCTCCACACAAGGGGGTGGGTACTGGAAATTGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCAGTAGCGTAAGCTGGTATGTCTGTGGAGGTAAAAAAAAAAGGGAAAAGACAAAAATACTTGGAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCA ] [+] EMBL AK058467 [ ATGCCACATCTGGTGGGACATTCAATCAGATAGAGTATCTTGTTAGTCAGGGTTGCATCAAGCCGCTTTGTGATTTACTTGTTCACCAAGATTCCAAAACAGTGTTAACTTGTTTGGAGGCCCTTGATAATATCTTGAGGGTTGGGGAGGCTAAGAAGAACTTGGGGGCTTGTAATATGAACATATTTGTGCCGATGGTTGATGAAGCTGATGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATGTTGAGATATATAATAAGGCAGTTTATGTGCTTGAGTCATACTGGGTGCAGGAGGATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTAAAGGTAAATTTCTATTCACTAATGGTTGGAACTGTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATGCACCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATCGGAGAGTCAAGTTATCCGAGTCATGGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGGTCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGGTTGGTTCATATGGATTATGGTTCTCCACACAAGGGGGTGGGTACTGGAAATTGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCAGTAGCGTAAGCTGGTATGTCTGTGGAGGTAAAAAAAAAAGGGAAAAGACAAAAATACTTGGAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAG] consensusID : consensus_4027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [TTTGTGCCGATGGTTGATGAAGCTGGTGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATGTTGAGATATATAATAAGGCAGTTTATGTGCCTGAGTCATACTGGGTGCAGGAGGATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTAAAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATGCCCCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATTGGAGAGTCAAGTTATCCGAGTCATGGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGGTCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGGTTGGTTCATATGGATTATGGTTCTCCCCCCAAGGGGGTGGGTACTGGAAATTGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCAGTAGCGTAAGCTGGTATGTCTGTGGAAGTAAAAAAAAAAGGGAAAAGACAAAAATTCTTGGAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAGTGGGTTTTGGAAAAAAAAAAAAAAAAA] [-] EMBL CA762986 [TTTGTGCCGATGGTTGATGAAGCTGGTGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATGTTGAGATATATAATAAGGCAGTTTATGTGCCTGAGTCATACTGGGTGCAGGAGGATGACCAACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTAAAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATGCCCCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATTGGAGAGTCAAGTTATCCGAGTCATGGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGGTCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGGTTGGTTCATATGGATTATGGTTCTCCCCCCAAGGGGGTGGGTACTGGAAATTGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCAGTAGCGTAAGCTGGTATGTCTGTGGAAGTAAAAAAAAAAGGGAAAAGACAAAAATTCTTGGAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAGTGGGTTTTGGAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4027#0 TGTTTCGAAGCCCCCCCCACAACACGGGAACCCCGAATCTCCCCACCTCTCCCCTCCCAT 60 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TCGACTAGGGTTTTTCTCTAGGGCTTGGGGAACCTCGGCGAGGCGCGTCGGCGATGTCGC 120 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TCCGGCCGAGCGAGCGGATGGGGATCCGCCAGAAGGGCTACAAGGCGTCGATGGACGCGG 180 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 CGGAGGGGCGGCGGCGGCGGGAGGACATCACCGTGATACTCCGCAAGGCCGACCGCGATC 240 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 GCGCCCTCAAGGAGAAGAGGCGGCGCCCCACGGCCACCGCCGCCGCCGAGGGGTTGCCGC 300 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 AGGCGGCGCACTCGTCGGCCATCGAGAAGAAGTTGGAGAGCCTGCCGATGATGGTGCAGG 360 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 GGTTGTACTCGGATGACAGCAGCATGCAGTTGGAGTCGACCACGCAGTTCAGGAAGCTGC 420 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TCTCTGTCGACCATTGTCCTCCAATTGATGAGGTGATTAGATCTGGAGTGCTCCCTCGCT 480 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TTGTGGAATTCCTCACCAGGGAGGAGTACCCCCAGCTCCAGTTTGAGGCAGCATGGGCTC 540 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TCACCAATATTGCTTCAGGAACAGCAGCCAACACAATGGCAGTTATTGAACATGGTGCTG 600 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TGCCCATCTTTGTGAAGCTCCTCAGCTCACCAAGAGAGGATGTCCGTGAACAGGCTGTCT 660 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 GGGCCCTGGGAAATGTGGCTGGGGATTCCACAAAATGCCGTAACCTGGTTCTTATGCATG 720 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 GTGCAATGTTACCGCTACTGCAGCAGCTCAATGAGCATGCTAAACTCTCGATGCTGAGGA 780 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 ACAGTGCCTGGACCCTTTCTAACTTCTGCCGTGGCAAGCCGCAGCCTGACTTCAAGCATG 840 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TTGAACCTGCGCTTCCAGTGCTGCGGGAGCTCATCCTCTCTCAAGATGAGGAGATCCTAA 900 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 CGGACTCATGTTGGGCACTCTCTTACCTGTCAGATGGTTCTAATGACAATATACAAGCTG 960 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TGATTGAAACTGGCGTGTGTGATTGGCTTGTTGAGCTCCTTAGCCATCCTTCACCTGTGG 1020 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TGCTCATTCCTGCTCTCCGCACGGTTGGCAACATTGTAACTGGGGATGATGCGCAGACCC 1080 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 AGTGTATTGTTGGTCATCCCCAAGCACTTCCCTGTCTTTTCAATCTTTTGACAACAACTC 1140 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 AAAAGAAAAGCGTCAAGAGAGAAGCTTGCTGGACAATCTCCAACATCACAGCTGGAACTA 1200 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 AAGAGCAGATTCAGGCTGTGATCGATTCAAACATAATTGCTCCTCTATTGCATCTGTTGC 1260 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 AACATGCTGAGTTTGATGTCAAAAAGGAGGCTGTTTGGGCAATTTCTAATGCCACATCTG 1320 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 GTGGGACATTCAATCAGATAGAGTATCTTGTTAGTCAGGGTTGCATCAAGCCGCTTTGTG 1380 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 ATTTACTTGTTCACCAAGATTCCAAAACAGTGTTAACTTGTTTGGAGGCCCTTGATAATA 1440 consensus_4027#1 ------------------------------------------------------------ consensus_4027#0 TCTTGAGGGTTGGGGAGGCTAAGAAGAACTTGGGGGCTTGTAATATGAACATATTTGTGC 1500 consensus_4027#1 -----------------------------------------------------TTTGTGC 7 ******* consensus_4027#0 CGATGGTTGATGAAGCTGATGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATG 1560 consensus_4027#1 CGATGGTTGATGAAGCTGGTGGCTTGGACAAAATTGAGGATCTCCAGAACCATGACAATG 67 ****************** ***************************************** consensus_4027#0 TTGAGATATATAATAAGGCAGTTTATGTGCTTGAGTCATACTGGGTGCAGGAGGATGACC 1620 consensus_4027#1 TTGAGATATATAATAAGGCAGTTTATGTGCCTGAGTCATACTGGGTGCAGGAGGATGACC 127 ****************************** ***************************** consensus_4027#0 AACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGT 1680 consensus_4027#1 AACAGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGT 187 ************************************************************ consensus_4027#0 TTGGCAGTTTCGGTAAAGGTAAATTTCTATTCACTAATGGTTGGAACTGTGAATCTGAAT 1740 consensus_4027#1 TTGGCAGTTTCGGTAAAG------------------------------------------ 205 ****************** consensus_4027#0 CTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATG 1800 consensus_4027#1 --------------------TTTGGCAGTTTCGGTGAAGTGCCCGATTTGGATGGAAATG 245 **************************************** consensus_4027#0 CACCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATCGGAGAGTCAAGTTATCCGAGTCAT 1860 consensus_4027#1 CCCCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATTGGAGAGTCAAGTTATCCGAGTCAT 305 * ********************************* ************************ consensus_4027#0 GGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGG 1920 consensus_4027#1 GGTTTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGG 365 ************************************************************ consensus_4027#0 TCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGG 1980 consensus_4027#1 TCAGGGTATGGCAATTAGGTACATTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGG 425 ************************************************************ consensus_4027#0 TTGGTTCATATGGATTATGGTTCTCCACACAAGGGGGTGGGTACTGGAAATTGGTCGGTC 2040 consensus_4027#1 TTGGTTCATATGGATTATGGTTCTCCCCCCAAGGGGGTGGGTACTGGAAATTGGTCGGTC 485 ************************** * ******************************* consensus_4027#0 GGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCA 2100 consensus_4027#1 GGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCA 545 ************************************************************ consensus_4027#0 GTAGCGTAAGCTGGTATGTCTGTGGAGGTAAAAAAAAAAGGGAAAAGACAAAAATACTTG 2160 consensus_4027#1 GTAGCGTAAGCTGGTATGTCTGTGGAAGTAAAAAAAAAAGGGAAAAGACAAAAATTCTTG 605 ************************** **************************** **** consensus_4027#0 GAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAG------------ 2208 consensus_4027#1 GAAGCTGTAAAGCCATAGTTTACATTGTTGTTAATCATGAGAACCCAGTGGGTTTTGGAA 665 ************************************************ consensus_4027#0 --------------- consensus_4027#1 AAAAAAAAAAAAAAA 680 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||