These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2422 fasta sequence [CGAGCAGCTGCACCTGTCGGACAACCAGCTCGCGGGGCGCATCCCGGCGGAGCTGAGCAACTGCAGCAGCCTCACGGCGCTCCAGCTCGACAAGAACGGCCTGACCGGCGCCATCCCGCCGCAGCTCGGCGAGCTCAGGGCGCTGCAGGTGCTGTTCCTCTGGGGCAACGCGCTCTCCGGCGCGATACCGCCGTCGCTCGGCAACTGCACCGAGCTGTACGCGCTCGACCTGTCCAGGAACCGCCTCGCCGGCGGCATCCCCGACGAGGTGTTCGCGCTGCAGAAGCTCAGCAAGCTGCTCCTCCTCGGGAACGCGCTCTCCGGGAGGCTCCCGCCGAGCGTCGCCGACTGCTCGTCGCTGGTGCGCCTCCGGCTCGGCGAGAACCAGCTCGCCGGCGAGATACCCAGGGAGATCGGCAAGCTGCCGAACCTGGTGTTCCTGGACCTCTACTCCAACAAGTTCACCGGCGCGCTCCCCGGCGAGCTCGCCAACATCACGGTGCTCGAGCTGCTCGACGTCCACAACAACAGCTTCACGGGTGCCATCCCGCCGCAGTTCGGCGAGCTCATGAACCTGGAGCAGCTTGACCTGAGCATGAACAAGCTCACCGGCGAGATACCGGCGAGCTTCGGCAACTTCAGCTACCTCAACAAGCTCATCCTCAGCGGCAACATGCTCTCCGGGACATTGCCCAAGTCGATTCGCAACCTGCAGAAGCTGACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGCGCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCCGGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTATGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTTGACATCTCTCAACATTTCGTACAACAATTTCTCCGGCGCGATCCCGGTGACACCGTTCTTCAAGACATTGTCATCGAGCTCCTACATCAACAATCCCAACCTCTGCGAGTCCTACGACGGGCACACTTGTGCATCAGACATGGTTCGCAGGACGGCACTGAAGACCGTCAAGACCGTGATCCTTGTCTGTGCTGTTCTGGGCTCAATCACTCTGTTGCTTGTTGTGGTCTGGATCCTGATCAACAGAAGCAGAACACTCGCGGGCAAGAAGGCGATGAGCATGTCGGTTGCGGGTGGCGATGACTTCTCGCACCCGTGGACGTTCACGCCGTTCCAGAAGCTGAACTTCTGCGTCGATAACATCTTGGAGTGCCTGAGAGATGAGAATGTGATCGGCAAAGGTTGCTCAGGTGTTGTGTACAGAGCTGAGATGCCGAATGGGGAGATCATCGCCGTGAAGAAGCTGTGGAAGACATCGAAGGAGGAGCCAATCGACGCGTTCGCTGCTGAGATTCAGATATTGGGGCACATCAGGCACCGGAACATCGTCAAGCTGCTTGGTTACTGCTCAAACAAGTATGTTAAGCTCTTGCTCTACAACTACATCCCCAATGGCAATCTGCAACAGCTCCTGAAGGATAACAGGAGCCTGGACTGGGATACCCGGTACAAGATCGCCGTCGGCGCAGCACAAGGGCTGGCCTATCTGCACCATGATTGCGTCCCGGCGATACTCCACCGCGATGTCAAGTGCAATAATATACTGCTTGATACGAAGTATGAGGCATACTTGGCTGACTTTGGGCTGGCCAAGCTGATGAACTCCCCCAACTATCATCATGCTATGTCACGCATCGCCGGTTCTTATGGATACATTGCTCCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGACGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAAAAAATTTCTTGTACAGCTCCAAATGGCGTTGCGTTGCAGCTCATTTTGGTGAACTTTGAATGGGGAAAAATTCCGCGGTTAT] [+] EMBL AK101039 [CGAGCAGCTGCACCTGTCGGACAACCAGCTCGCGGGGCGCATCCCGGCGGAGCTGAGCAACTGCAGCAGCCTCACGGCGCTCCAGCTCGACAAGAACGGCCTGACCGGCGCCATCCCGCCGCAGCTCGGCGAGCTCAGGGCGCTGCAGGTGCTGTTCCTCTGGGGCAACGCGCTCTCCGGCGCGATACCGCCGTCGCTCGGCAACTGCACCGAGCTGTACGCGCTCGACCTGTCCAGGAACCGCCTCGCCGGCGGCATCCCCGACGAGGTGTTCGCGCTGCAGAAGCTCAGCAAGCTGCTCCTCCTCGGGAACGCGCTCTCCGGGAGGCTCCCGCCGAGCGTCGCCGACTGCTCGTCGCTGGTGCGCCTCCGGCTCGGCGAGAACCAGCTCGCCGGCGAGATACCCAGGGAGATCGGCAAGCTGCCGAACCTGGTGTTCCTGGACCTCTACTCCAACAAGTTCACCGGCGCGCTCCCCGGCGAGCTCGCCAACATCACGGTGCTCGAGCTGCTCGACGTCCACAACAACAGCTTCACGGGTGCCATCCCGCCGCAGTTCGGCGAGCTCATGAACCTGGAGCAGCTTGACCTGAGCATGAACAAGCTCACCGGCGAGATACCGGCGAGCTTCGGCAACTTCAGCTACCTCAACAAGCTCATCCTCAGCGGCAACATGCTCTCCGGGACATTGCCCAAGTCGATTCGCAACCTGCAGAAGCTGACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGCGCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCCGGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTATGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTTGACATCTCTCAACATTTCGTACAACAATTTCTCCGGCGCGATCCCGGTGACACCGTTCTTCAAGACATTGTCATCGAGCTCCTACATCAACAATCCCAACCTCTGCGAGTCCTACGACGGGCACACTTGTGCATCAGACATGGTTCGCAGGACGGCACTGAAGACCGTCAAGACCGTGATCCTTGTCTGTGCTGTTCTGGGCTCAATCACTCTGTTGCTTGTTGTGGTCTGGATCCTGATCAACAGAAGCAGAACACTCGCGGGCAAGAAGGCGATGAGCATGTCGGTTGCGGGTGGCGATGACTTCTCGCACCCGTGGACGTTCACGCCGTTCCAGAAGCTGAACTTCTGCGTCGATAACATCTTGGAGTGCCTGAGAGATGAGAATGTGATCGGCAAAGGTTGCTCAGGTGTTGTGTACAGAGCTGAGATGCCGAATGGGGAGATCATCGCCGTGAAGAAGCTGTGGAAGACATCGAAGGAGGAGCCAATCGACGCGTTCGCTGCTGAGATTCAGATATTGGGGCACATCAGGCACCGGAACATCGTCAAGCTGCTTGGTTACTGCTCAAACAAGTATGTTAAGCTCTTGCTCTACAACTACATCCCCAATGGCAATCTGCAACAGCTCCTGAAGGATAACAGGAGCCTGGACTGGGATACCCGGTACAAGATCGCCGTCGGCGCAGCACAAGGGCTGGCCTATCTGCACCATGATTGCGTCCCGGCGATACTCCACCGCGATGTCAAGTGCAATAATATACTGCTTGATACGAAGTATGAGGCATACTTGGCTGACTTTGGGCTGGCCAAGCTGATGAACTCCCCCAACTATCATCATGCTATGTCACGCATCGCCGGTTCTTATGGATACATTGCTCCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGACGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAAAAAATTTCTTGTACAGCTCCAAATGGCGTTGCGTTGCAGCTCATTTTGGTGAACTTTGAATGGGGAAAAATTCCGCGGTTAT] [+] EMBL CA756789 [ ATTCGCAACCTGCAGAAGCTGACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGCGCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCCGGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTATGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTT ] consensusID : consensus_4030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [CTGGCCCAAGATTATGTTGATATGCTTAAAACATCCAAGAAATTTATCCTGACATACATTTCCTCATTTTCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGGCGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTT] [-] EMBL AK062501 [CTGGCCCAAGATTATGTTGATATGCTTAAAACATCCAAGAAATTTATCCTGACATACATTTCCTCATTTTCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGTGTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGGCGGTGGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGTAGGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4030#0 CGAGCAGCTGCACCTGTCGGACAACCAGCTCGCGGGGCGCATCCCGGCGGAGCTGAGCAA 60 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CTGCAGCAGCCTCACGGCGCTCCAGCTCGACAAGAACGGCCTGACCGGCGCCATCCCGCC 120 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GCAGCTCGGCGAGCTCAGGGCGCTGCAGGTGCTGTTCCTCTGGGGCAACGCGCTCTCCGG 180 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CGCGATACCGCCGTCGCTCGGCAACTGCACCGAGCTGTACGCGCTCGACCTGTCCAGGAA 240 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CCGCCTCGCCGGCGGCATCCCCGACGAGGTGTTCGCGCTGCAGAAGCTCAGCAAGCTGCT 300 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CCTCCTCGGGAACGCGCTCTCCGGGAGGCTCCCGCCGAGCGTCGCCGACTGCTCGTCGCT 360 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GGTGCGCCTCCGGCTCGGCGAGAACCAGCTCGCCGGCGAGATACCCAGGGAGATCGGCAA 420 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GCTGCCGAACCTGGTGTTCCTGGACCTCTACTCCAACAAGTTCACCGGCGCGCTCCCCGG 480 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CGAGCTCGCCAACATCACGGTGCTCGAGCTGCTCGACGTCCACAACAACAGCTTCACGGG 540 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 TGCCATCCCGCCGCAGTTCGGCGAGCTCATGAACCTGGAGCAGCTTGACCTGAGCATGAA 600 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CAAGCTCACCGGCGAGATACCGGCGAGCTTCGGCAACTTCAGCTACCTCAACAAGCTCAT 660 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CCTCAGCGGCAACATGCTCTCCGGGACATTGCCCAAGTCGATTCGCAACCTGCAGAAGCT 720 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GACCATGCTGGAGCTGAGCAACAACAGCTTCTCCGGTCCGATACCGCCGGAGATTGGCGC 780 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GCTCTCGAGCCTGAGCATTAGCCTTGACCTCAGCTCGAACAGGTTCACCGGCGAGCTGCC 840 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GGATGAGATGTCCAGCTTGACGCAGCTGCAGTCGCTCGACCTCTCCAGCAATGGCTTGTA 900 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 TGGCAGCATCTCAGTGTTGAGTGGGCTCACCAGCTTGACATCTCTCAACATTTCGTACAA 960 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CAATTTCTCCGGCGCGATCCCGGTGACACCGTTCTTCAAGACATTGTCATCGAGCTCCTA 1020 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CATCAACAATCCCAACCTCTGCGAGTCCTACGACGGGCACACTTGTGCATCAGACATGGT 1080 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 TCGCAGGACGGCACTGAAGACCGTCAAGACCGTGATCCTTGTCTGTGCTGTTCTGGGCTC 1140 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 AATCACTCTGTTGCTTGTTGTGGTCTGGATCCTGATCAACAGAAGCAGAACACTCGCGGG 1200 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CAAGAAGGCGATGAGCATGTCGGTTGCGGGTGGCGATGACTTCTCGCACCCGTGGACGTT 1260 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CACGCCGTTCCAGAAGCTGAACTTCTGCGTCGATAACATCTTGGAGTGCCTGAGAGATGA 1320 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GAATGTGATCGGCAAAGGTTGCTCAGGTGTTGTGTACAGAGCTGAGATGCCGAATGGGGA 1380 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GATCATCGCCGTGAAGAAGCTGTGGAAGACATCGAAGGAGGAGCCAATCGACGCGTTCGC 1440 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 TGCTGAGATTCAGATATTGGGGCACATCAGGCACCGGAACATCGTCAAGCTGCTTGGTTA 1500 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CTGCTCAAACAAGTATGTTAAGCTCTTGCTCTACAACTACATCCCCAATGGCAATCTGCA 1560 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 ACAGCTCCTGAAGGATAACAGGAGCCTGGACTGGGATACCCGGTACAAGATCGCCGTCGG 1620 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 CGCAGCACAAGGGCTGGCCTATCTGCACCATGATTGCGTCCCGGCGATACTCCACCGCGA 1680 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 TGTCAAGTGCAATAATATACTGCTTGATACGAAGTATGAGGCATACTTGGCTGACTTTGG 1740 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 GCTGGCCAAGCTGATGAACTCCCCCAACTATCATCATGCTATGTCACGCATCGCCGGTTC 1800 consensus_4030#1 -CTGGCCCAA--GATTATGTTGATATGCTTAAAACAT-CCAAGAAATTTATC-CTGACAT 55 ****** * *** * * ** * *** * * * * *** * * consensus_4030#0 TTATGGATACATTGCTCCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGT 1860 consensus_4030#1 ACATTTCCTCATT--TTCAGAGTATGGCTACACCACGAAGATCACCGAGAAGAGCGACGT 113 ** **** * ******************************************* consensus_4030#0 GTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGACGGT 1920 consensus_4030#1 GTACAGCTACGGGGTGGTGCTCCTGGAGATCCTGAGCGGGCGGAGCGCGGTGGAGGCGGT 173 ******************************************************* **** consensus_4030#0 GGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCC 1980 consensus_4030#1 GGTGGGCGACTCCCTCCACATCGTGGAGTGGGCGAAGAAGAAGATGGGGAGCTACGAGCC 233 ************************************************************ consensus_4030#0 AGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGAT 2040 consensus_4030#1 AGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGAT 293 ************************************************************ consensus_4030#0 GCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCAC 2100 consensus_4030#1 GCTGCAGACGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCAC 353 ************************************************************ consensus_4030#0 CATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAA 2160 consensus_4030#1 CATGAAGGAGGTGGTGGCCTTCCTCAAGGAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAA 413 ************************************************************ consensus_4030#0 GATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGA 2220 consensus_4030#1 GATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACATGAACATCAAGA 473 ************************************************************ consensus_4030#0 ACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTT 2280 consensus_4030#1 ACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTT 533 ************************************************************ consensus_4030#0 CAAGGAGTAGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAA 2340 consensus_4030#1 CAAGGAGTAGGATTT--------------------------------------------- 548 *************** consensus_4030#0 AAAATTTCTTGTACAGCTCCAAATGGCGTTGCGTTGCAGCTCATTTTGGTGAACTTTGAA 2400 consensus_4030#1 ------------------------------------------------------------ consensus_4030#0 TGGGGAAAAATTCCGCGGTTAT 2422 consensus_4030#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||