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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1385 fasta sequence
[AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGATACTT]
[+] EMBL AK072573 [AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCG ]
[+] EMBL AK109786 [ AGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGATACTT]
consensusID : consensus_4031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACGCGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA]
[-] EMBL CA762999 [TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACGCGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4031#0 AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGC 60
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCA 120
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 TGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTT 180
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCG 240
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 ACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCG 300
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGG 360
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCAT 420
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGA 480
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCT 540
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGT 600
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCA 660
consensus_4031#1 ------------------TCCCACGTCCACGCGCCAG--GGCGCCTCTACCTGTGGTTTG 40
** ** ** * ** * *
consensus_4031#0 GGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGT 720
consensus_4031#1 GCAGCACAGTCCAACGGACGCGGCAATTACGTAG----CAGCCAACGGGCCTGACCC--T 94
* ****** * * * ** * * * ** * *** * **** *
consensus_4031#0 CGGCTGCACGCCGTGGGTAACCAGGCCGGG--CAACTACTCCGGCTGCAGCTCCACC-GG 777
consensus_4031#1 CGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGG 154
**** ** ** ** *** ** *** * ***** ***** * ******* * **
consensus_4031#0 CAACATGGGCGCCTACCTCCACGG-CAGCAACCTCCAACAGAAGCTCTCGCACCTCGACT 836
consensus_4031#1 CAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCT 214
************** ********* ************************** ***** **
consensus_4031#0 ACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTT 896
consensus_4031#1 ACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTT 274
*********************** ************************************
consensus_4031#0 CGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGG 956
consensus_4031#1 CGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGG 334
****** *****************************************************
consensus_4031#0 ACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCA 1016
consensus_4031#1 ACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCA 394
************* **********************************************
consensus_4031#0 ACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGG 1076
consensus_4031#1 ACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGG 454
************************************************************
consensus_4031#0 CCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGA 1136
consensus_4031#1 CCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGA 514
***************************************** ******************
consensus_4031#0 GATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTT 1196
consensus_4031#1 GATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTT 574
************************************************************
consensus_4031#0 GTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTG 1256
consensus_4031#1 GTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTG 634
************************************************************
consensus_4031#0 GATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTT 1316
consensus_4031#1 GATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA--- 691
********************************************* *
consensus_4031#0 ATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTAT 1376
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 CTGATACTT 1385
consensus_4031#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||