These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1385 fasta sequence [AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGATACTT] [+] EMBL AK072573 [AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCG ] [+] EMBL AK109786 [ AGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGATACTT] consensusID : consensus_4031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACGCGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA] [-] EMBL CA762999 [TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACGCGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4031#0 AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGC 60 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCA 120 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 TGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTT 180 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCG 240 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 ACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCG 300 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGG 360 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 GCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCAT 420 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 GAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGA 480 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCT 540 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGT 600 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCA 660 consensus_4031#1 ------------------TCCCACGTCCACGCGCCAG--GGCGCCTCTACCTGTGGTTTG 40 ** ** ** * ** * * consensus_4031#0 GGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGT 720 consensus_4031#1 GCAGCACAGTCCAACGGACGCGGCAATTACGTAG----CAGCCAACGGGCCTGACCC--T 94 * ****** * * * ** * * * ** * *** * **** * consensus_4031#0 CGGCTGCACGCCGTGGGTAACCAGGCCGGG--CAACTACTCCGGCTGCAGCTCCACC-GG 777 consensus_4031#1 CGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGG 154 **** ** ** ** *** ** *** * ***** ***** * ******* * ** consensus_4031#0 CAACATGGGCGCCTACCTCCACGG-CAGCAACCTCCAACAGAAGCTCTCGCACCTCGACT 836 consensus_4031#1 CAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCT 214 ************** ********* ************************** ***** ** consensus_4031#0 ACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTT 896 consensus_4031#1 ACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTT 274 *********************** ************************************ consensus_4031#0 CGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGG 956 consensus_4031#1 CGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGG 334 ****** ***************************************************** consensus_4031#0 ACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCA 1016 consensus_4031#1 ACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCA 394 ************* ********************************************** consensus_4031#0 ACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGG 1076 consensus_4031#1 ACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGG 454 ************************************************************ consensus_4031#0 CCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGA 1136 consensus_4031#1 CCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGA 514 ***************************************** ****************** consensus_4031#0 GATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTT 1196 consensus_4031#1 GATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTT 574 ************************************************************ consensus_4031#0 GTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTG 1256 consensus_4031#1 GTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTG 634 ************************************************************ consensus_4031#0 GATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTT 1316 consensus_4031#1 GATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA--- 691 ********************************************* * consensus_4031#0 ATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTAT 1376 consensus_4031#1 ------------------------------------------------------------ consensus_4031#0 CTGATACTT 1385 consensus_4031#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||