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Oryza sativa
cluster # 4031 cluster # 4031       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4031#0 length = 1385 sequences # 2  
consensus_4031#1 length = 691 sequences # 1  

consensusID : consensus_4031#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1385
fasta sequence
                              [AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGATACTT]

[+] EMBL AK072573             [AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCG                                                                                                               ]
[+] EMBL AK109786             [ AGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGCCATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCATGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTTCTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCGACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCGCCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGGGCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCATGAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGACAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCTCCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGTCAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCAGGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGTCGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAACATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGATACTT]


>consensus_4031#0 AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGC CATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCA TGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTT CTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCG ACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCG CCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGG GCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCAT GAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGA CAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCT CCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGT CAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCA GGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGT CGGCTGCACGCCGTGGGTAACCAGGCCGGGCAACTACTCCGGCTGCAGCTCCACCGGCAA CATGGGCGCCTACCTCCACGGCAGCAACCTCCAACAGAAGCTCTCGCACCTCGACTACGT CCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAA GCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCC GAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGA TCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGT CATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGAGATG GGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGA GAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATA TTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTA TTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTATCTGA TACTT



consensusID : consensus_4031#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACGCGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA]

[-] EMBL CA762999             [TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACGCGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA]


>consensus_4031#1 TCCCACGTCCACGCGCCAGGGCGCCTCTACCTGTGGTTTGGCAGCACAGTCCAACGGACG CGGCAATTACGTAGCAGCCAACGGGCCTGACCCTCGGCAGCCCGTCGCGGGGTACACAGC CCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGGCAACATGGGCGCCTTCCTCCACGGGC AGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCTACGTCCACCATGTCGACCTCAACCCT GCCTTCTCCAACATCGTCAATCCCGACCAAGGTTCGAAGCCCAAGGTGTCGAGCCAGTTC GAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGACCCGAACGGCTTTTGCGGGCAGAAG GGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCTACTGG GACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCA ATCAAGAAATTCCTTGGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTG TTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTGTGAGAGTTAGTTATATATGTTAGTA AATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGTTTTAT TGAACATCTCGTTTCGTCAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4031#0      AAGCAATTCAACGAGTTACACCTTCCACCGTCAACCGAGGAGCTTTCAGTTGTTGCCGGC 60
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CATGGCGGCGAAGCTCTCCTTGCTACTTCCCGTCACCTGCTTCATCCTCTTCGTTCTGCA 120
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      TGCTGTTCATGTGGAGGCGCGTCCCGATCCTGCCGCTTTCGGCGACTCCGACAACGGGTT 180
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CTACACGCTGTTCGTGTTCGGCGATTCGTTCGCCGACACCGGCAATCTCCCCAAGCGCCG 240
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      ACTGAGCGAGCAGTCGCGCGAATGGTACTACCCCTACGGCCGTGACCGTGGCAACAACCG 300
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CCCAACCGGCCGCTTCTCCAACGCCATGGTCCAGTCCGATCTCATCGCACGGATGCTGGG 360
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GCGTCATGAGGCGCCTCCGACGTACAGGAGGGTGGACAACTACGTGCACCCGCACGGCAT 420
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      GAACTTCGCCGCCGGCGGCTCCGGCGTGTTCAAGCTGCCGAGCGGCGCGCCGACGCTCGA 480
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CAAGCAGGTCGACCACTTCAGGGACCTGGTGCAGGACGGCACCATCACCCGCCGGAACCT 540
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CCGTAACTCCATCGCCCTCGTCGCCGTCTCCGGCAACGACTACGCCCGCCTCGCCAACGT 600
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CAACGACACTAGCAAGATGATCAAGTTTGTCGATGAGGTGACGAGCGAGATCGCGAAGCA 660
consensus_4031#1      ------------------TCCCACGTCCACGCGCCAG--GGCGCCTCTACCTGTGGTTTG 40
                                           ** **         **  * **         * *     

consensus_4031#0      GGTGCACAGGCTGAAGAACAACGGGGCGAGGAAGATCCTGGTGAACAACCTGCACCCCGT 720
consensus_4031#1      GCAGCACAGTCCAACGGACGCGGCAATTACGTAG----CAGCCAACGGGCCTGACCC--T 94
                      *  ****** *  * * **   *     * * **      *  ***   *   ****  *

consensus_4031#0      CGGCTGCACGCCGTGGGTAACCAGGCCGGG--CAACTACTCCGGCTGCAGCTCCACC-GG 777
consensus_4031#1      CGGCAGCCCGTCGCGGGGTACACAGCCCGCTCCAACTCGTCCGGTTACAGCTCCCTCTGG 154
                      **** ** ** ** ***  **   *** *   *****  ***** * *******  * **

consensus_4031#0      CAACATGGGCGCCTACCTCCACGG-CAGCAACCTCCAACAGAAGCTCTCGCACCTCGACT 836
consensus_4031#1      CAACATGGGCGCCTTCCTCCACGGGCAGCAACCTCCAACAGAAGCTCTCGCGCCTCGCCT 214
                      ************** ********* ************************** ***** **

consensus_4031#0      ACGTCCACCATGTCGACCTCAACACTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTT 896
consensus_4031#1      ACGTCCACCATGTCGACCTCAACCCTGCCTTCTCCAACATCGTCAATCCCGACCAAGGTT 274
                      *********************** ************************************

consensus_4031#0      CGAAGCACAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGG 956
consensus_4031#1      CGAAGCCCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGG 334
                      ****** *****************************************************

consensus_4031#0      ACCCGAACGGCTTCTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCA 1016
consensus_4031#1      ACCCGAACGGCTTTTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCA 394
                      ************* **********************************************

consensus_4031#0      ACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGG 1076
consensus_4031#1      ACGATCCGGAGAAGTACTTCTACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGG 454
                      ************************************************************

consensus_4031#0      CCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTCGAATCAACTAGAAATTGA 1136
consensus_4031#1      CCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTTGGAATCAACTAGAAATTGA 514
                      ***************************************** ******************

consensus_4031#0      GATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTT 1196
consensus_4031#1      GATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTT 574
                      ************************************************************

consensus_4031#0      GTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTG 1256
consensus_4031#1      GTGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTG 634
                      ************************************************************

consensus_4031#0      GATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTT 1316
consensus_4031#1      GATATTTTGTTTAGCTCGTGTTTTATTGAACATCTCGTTTCGTCAAAAAAAAAAAAA--- 691
                      *********************************************          *    

consensus_4031#0      ATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACATGTGAATTTGGCCCACGTAT 1376
consensus_4031#1      ------------------------------------------------------------
                                                                                  

consensus_4031#0      CTGATACTT 1385
consensus_4031#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)