These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1142 fasta sequence [CGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCGCCACCGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGCTACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAACGTCTCCTTCCGCACGACGGCCGACGACCTCCTCGCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATCCGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGAGGGTTCGCGTTCGTGAGGTACAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAAGCTCGACGGGAGGACGGTGGATGGAGGGATATCATGGTGCAGTTCGCCAAGTACGGCCCAAATGCTGAAAGAATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACA-CTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGGATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTATTTTTTTCCCTCAATTGAGTGCTTATTATAGACTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTGATTCTGAGGCTGATAATTTTGCTGCCCGATTTCATCCTTTCCTGTAAAAAAAAAAAAA] [+] EMBL AK073057 [CGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCGCCACCGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGCTACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAACGTCTCCTTCCGCACGACGGCCGACGACCTCCTCGCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATCCGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGAGGGTTCGCGTTCGTGAGGTACAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAAGCTCGACGGGAGGACGGTGGATGGAGGGATATCATGGTGCAGTTCGCCAAGTACGGCCCAAATGCTGAAAGAATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACA CTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGGATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTATTTTTTTCCCTCAATTGAGTGCTTATTATAGACTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTG ] [-] EMBL CA761640 [ ACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACCTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACATTCTCCACGTTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGTCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTA TTTTTTCCCTCAATTGAGTGCTTATTATAGGCTGTAATTTGCATGATGGAGCGAAGAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGGACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTGATTCTGAGGCTGATAATTTTGCTGCCCGATTTCATCCTTTCCTGTAAAAAAAAAAAAA] consensusID : consensus_4035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 961 fasta sequence [AACCATATGCCTAATAATTTGATTTAGTTGCCAGTCTTATCTTATGGTGTCTTTTCTCAGCTTTTGGTCATTTCTCATTGACAGCTTTTACACTCTTTTTTTCTTTTTCTTTTTCTCTCTCTTTTTTTTGGTGGGATAGAACTTTTATAATTGGGCCCTGCTTTACCAAACAAAAATAGTGTAATGAAAATTTGGGTGCTCTGCAACATACCATATCTGGTCAAGAAGTACCATTTCAGTCTTCAAAGCAATACTGACATCTTTTACACTAAATTTAGCATGGGTACTTTTTTTCTGCCAGAAAGAAAATATGTTGTAGGAAATTATCGGTTACAATTCTACACAAGAATGTGCATGTATGAAACACTCAGAAGTCAAAACGATTTCACACATTACATTTGCCTTTCTGTTTGTGTTTGCAGTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTAT] [+] EMBL AK062658 [AACCATATGCCTAATAATTTGATTTAGTTGCCAGTCTTATCTTATGGTGTCTTTTCTCAGCTTTTGGTCATTTCTCATTGACAGCTTTTACACTCTTTTTTTCTTTTTCTTTTTCTCTCTCTTTTTTTTGGTGGGATAGAACTTTTATAATTGGGCCCTGCTTTACCAAACAAAAATAGTGTAATGAAAATTTGGGTGCTCTGCAACATACCATATCTGGTCAAGAAGTACCATTTCAGTCTTCAAAGCAATACTGACATCTTTTACACTAAATTTAGCATGGGTACTTTTTTTCTGCCAGAAAGAAAATATGTTGTAGGAAATTATCGGTTACAATTCTACACAAGAATGTGCATGTATGAAACACTCAGAAGTCAAAACGATTTCACACATTACATTTGCCTTTCTGTTTGTGTTTGCAGTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAGTCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTATCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCATAGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCATTAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACGCTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGGATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTTCAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTGAGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGTGCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4035#0 ------------CGCCGCCCGCCGCCGCGTCATCTCTTCTCTTCTGTTAAACCCCCTCCG 48 consensus_4035#1 AACCATATGCCTAATAATTTGATTTAGTTGCCAGTCTTATCTTATGGTGTCTTTTCTCAG 60 * * * **** **** ** * *** * consensus_4035#0 CCACCGTCGCTGCCGCCGCCGCCGCCTCCGGAGCCCGAGACGATGTCGCGCCTCGGCCGC 108 consensus_4035#1 CTTTTGGTCATTTCTCATTGACAGCTTTTACACTCTTT--TTTTCTTTTTCTTTTTCTCT 118 * * * * * * ** * * * * * * * * consensus_4035#0 TACGGCCCACCGGCGGTCCGCGACTCCTACTCCCTCCTCGTCCTCAAC--GTCTCCTTCC 166 consensus_4035#1 CTCTTTTTTTTGGTGGGATAGAACTTTTATAATTGGGCCCTGCTTTACCAAACAAAAATA 178 * ** ** *** ** * * ** ** * consensus_4035#0 GCACGACGGCCGACGACCTCCTC-GCGCTCTTCGACCGCTGCGGCGAGGTCCTCGACATC 225 consensus_4035#1 GTGTAATGAAAATTTGGGTGCTCTGCAACATACCATATCTG-GTCAAGAAGTACCATTTC 237 * * * * *** ** * * * *** * * ** * * ** consensus_4035#0 CGCATCCCCCGCGACCGCAGGACTGGGGATTCGAGA----GGGTTCGCGTTCGTGAGGTA 281 consensus_4035#1 AGTCTTCAAAGCAATACTGACATCTTTTACACTAAATTTAGCATGGGTACTTTTTTTCTG 297 * * * ** * * * * * * * * * * * * consensus_4035#0 CAAGTACGAGGACGAGGCGCAGAAGGCCGTCGATAA--GCTCGACGGGAGGACG---GTG 336 consensus_4035#1 CCAGAAAGAAAATATGTTGTAGGAAATTATCGGTTACAATTCTACACAAGAATGTGCATG 357 * ** * ** * * * ** * *** * * ** ** ** * * ** consensus_4035#0 GATGGAG-----GGATATCATGGTGCAGTTCGCCAAGTACG---GCCCAAATGCTGAAA- 387 consensus_4035#1 TATGAAACACTCAGAAGTCAAAACG-ATTTCACACATTACATTTGCCTTTCTGTTTGTGT 416 *** * ** *** * * *** * * *** *** ** * consensus_4035#0 --GAATTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAG 445 consensus_4035#1 TTGCAGTCATAAGGGGAGGATTGTAGAAGAGATTTCGAAGCCAAGAGGCCGATCCAGAAG 476 * * ****************************************************** consensus_4035#0 TCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTA 505 consensus_4035#1 TCCTAGTCCAAAACGGAGGTATCGTGCTGACTACCGAGACAGGGGCTACCGTGATGACTA 536 ************************************************************ consensus_4035#0 TCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCAT 565 consensus_4035#1 TCGGGACAGACACTATCGTGATGACTATCAGGACAGGGAGTATAGGAGAAGCCGAAGCAT 596 ************************************************************ consensus_4035#0 AGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCAT 625 consensus_4035#1 AGAGAGGTATGAACGTGAGAGGTATCAAGAAAAAGGCTATCGTCGCAGGAGCCGGAGCAT 656 ************************************************************ consensus_4035#0 TAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACG 685 consensus_4035#1 TAGCCCTGATTATGACAGGAGGCATCGCAAGAATGGGCCCAGGGATGAACGTTCTCCACG 716 ************************************************************ consensus_4035#0 CTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGG 745 consensus_4035#1 CTCTCGAAGCCCTTTGACCTAGCTGAATGCCCTACACAATATATCATAGATAGCTTGAGG 776 ************************************************************ consensus_4035#0 ATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGGATACTGATAATGGTGTAGTGTT 805 consensus_4035#1 ATGAATAGACCGGAGCCTTGTCTGCTTGCTTAGGACGAATACTGATAATGGTGTAGTGTT 836 ************************************* ********************** consensus_4035#0 CAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTG 865 consensus_4035#1 CAACATGGCTGCATTTGAGCATCCAAGGCTGCTTCCTTGTTAACAAGACAGCACCTTTTG 896 ************************************************************ consensus_4035#0 AGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGT 925 consensus_4035#1 AGAACAATGTAGATTTCTGTTATTTTTTGTATCTACTTTATTTCTTATATCCATGTCAGT 956 ************************************************************ consensus_4035#0 GCTATTTTTTTCCCTCAATTGAGTGCTTATTATAGACTGTAATTTGCATGATGGAGCGAA 985 consensus_4035#1 GCTAT------------------------------------------------------- 961 ***** consensus_4035#0 GAGGTGTTGGTTGATAATTGCTCCGTATGCAAGTTGCTGTCATGATCTTGCGGTTGACGG 1045 consensus_4035#1 ------------------------------------------------------------ consensus_4035#0 ACCATGTTGATGCTAAACACCTTGATGATGATTTTGGTGATTCTGAGGCTGATAATTTTG 1105 consensus_4035#1 ------------------------------------------------------------ consensus_4035#0 CTGCCCGATTTCATCCTTTCCTGTAAAAAAAAAAAAA 1142 consensus_4035#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||