These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1362 fasta sequence [CCATTCCATGTACAGACTTATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCAATGACCGGGCACCCCTTGAGAGAGGAACCCATGTAGTTCATGATGTGCTGCCGCTCGAATATGTGGCCACAAGTCATAATGAATCAAAGAAAAAAAATAATCAGTGAAGTAGGCTGCAGTTATTAGGCTAGGGAGTGCTCCCTCCAAATATCTAATCACAAATAAATGTTATTTATTCATGGTCCAATTTTATAAATTTTGTCCGATCAAATATTGCATTGAAAATATAATATTTTTATTAGGTGTTACAAATATTTCACACCAGAAATTATATGCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGATTCTGGACTTTTTTCTGTCTAAAACAGCACTATTTTGTGATAGAGGAGCTAATAACTGAAGTATATTTTGCTGACGATGTACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTGTTCCCTCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGA] [+] EMBL CB673573 [CCATTCCATGTACAGACTTATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCAATGACCGGGCACCCCTTGAGAGAGGAACCCATGTAGTTCATGATGTGCTGCCGCTCGAATATGTGGCCACAAGTCATAATGAATCAAAGAAAAAAAATAATCAGTGAAGTAGGCTGCAGTTATTAGGCTAGGGAGTGCTCCCTCCAAATATCTAATCACAAATAAATGTTATTTATTCATGGTCCAATTTTATAAATTTTGTCCGATCAAATATTGCATTGAAAATATAATATTTTTATTAGGTGTTACAAATATTTCACACCAGAAATTATATGCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGATTCTGGACTTTTTTCTGTCTAAAACAGCACTATTTTGTGATAGAGGAGCTAATAACTGAAGTATATTTTGCTGACGATGTACCTTCTCAATGGCTGAGTTA ] [-] EMBL CB673572 [ GCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGATTCTGGACTTTTTTCTGTCTAAAACAGCACTATTTTGTGATAGAGGAGCTAATAACTGAAGTATATTTTGCTGACGATGTACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTGTTCCCTCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGA] consensusID : consensus_4036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 995 fasta sequence [TGACAGTGCTCATTCATTTGCAGGTGTTGGAACTCTTCCATTCCATGTACAGAATAATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGAGGGCGAAATGG] [-] EMBL AK099956 [TGACAGTGCTCATTCATTTGCAGGTGTTGGAACTCTTCCATTCCATGTACAGAATAATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAACCGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCAAATACCAGGTCGTTTGACACAGCACCAGGACAACCTTCTCAATGGCTGAGTTAACTCTGCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCATGGTTAACATTGTGAACCTGCTCCAGTGCAGCCTTAAATTGTAGAAACAGAAGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACTAATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCTACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACATCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGGGATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGGTCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGGCGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGGGTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCGCGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGAGGGCGAAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4036#0 CCATTCCATGTACAGACTTATATTTGTTTCTATGTACAAGGGCATGGCACAGCGATCAAC 60 consensus_4036#1 ------------------------------------------------------------ consensus_4036#0 CGCTGAATGCCTTGTTTAAGCCAAAGGTAAATGACAGGTGCCCAGAGAAACAAAACACAG 120 consensus_4036#1 ------------------------------------------------------------ consensus_4036#0 CAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAACCT 180 consensus_4036#1 ------------------------------------------------------------ consensus_4036#0 CTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCTCA 240 consensus_4036#1 ------------------------------------------------------------ consensus_4036#0 AATACCAGGTCGTTTGACACAGCACCAGGACAACCAATGACCGGGCACCCCTTGAGAGAG 300 consensus_4036#1 ------------------------------------------------------------ consensus_4036#0 GAACCCATGTAGTTCATGATGTGCTGCCGCTCGAATATGTGGCCACAAGTCATAATGAAT 360 consensus_4036#1 ------------------------------------------------------------ consensus_4036#0 CAAAGAAAAAAAATAATCAGTGA-AGTAGGCTGCAGTTATTAGGCTAGGGAGTGCTCCCT 419 consensus_4036#1 --------------------TGACAGTGCTCATTCATTTGCAGGTGTTGGAACTCTTCCA 40 *** *** * ** *** *** ** ** consensus_4036#0 CCAAATATCTAATCACAAATAAATGTTATTTATTCATGGTCCAATTTTATAAATTTTGTC 479 consensus_4036#1 TTCCATGTACAG--AATAATATTTGTT-TCTATGTACAAGGGCATGGCACAGCGATCAAC 97 ** * * * **** **** * *** * ** * * * * consensus_4036#0 CGATCAAATATTGCATTGAAAATATAATATTTTTATTAGGTGTTACAAATATTTCACACC 539 consensus_4036#1 CG-CTGAATGCCTTGTTTAAGCCA-AAGGTAAATGACAGGTGCCCAGAGAAACAAAACAC 155 ** *** ** ** * ** * * ***** * * * * consensus_4036#0 AGAAATTATATGCTCAATATTGCACATTGGAATTTTTAGCAACCAATCCGATATCTGGA- 598 consensus_4036#1 AGCAGACGTTTGCCTCGCGTTGCAGAATTGAAGCCTGTTCGACCTGTAACCAAACCAAAC 215 ** * * *** ***** * * *** * * *** * * * * consensus_4036#0 -TTCTGGAC-TTTTTTCTGTCTAAAACAGCACT--ATTTTGTGATAGAGGAGCTAATAAC 654 consensus_4036#1 CTCTTGCACATTCTCTCTGTCAGTGGCAGTACTTTATGTCGTGCCTAAGCTCTGCATCCT 275 * ** ** ** * ****** *** *** ** * *** ** ** consensus_4036#0 TGAAGTATATTTTGCT-GACGATGTACC---------TTCTCAATGGCTGAGTTAACTCT 704 consensus_4036#1 CAAATACCAGGTCGTTTGACACAGCACCAGGACAACCTTCTCAATGGCTGAGTTAACTCT 335 ** * * * * *** * *** *********************** consensus_4036#0 GCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCA 764 consensus_4036#1 GCAATCTCCGTCCCGGACAGTGGGCAATTGGTGTACTTGTCAAGAGATATAGCAATCTCA 395 ************************************************************ consensus_4036#0 TGGTTAACATTGTGAACCTGCTGTTCCCTCTCCAGTGCAGCCTTAAATTGTAGAAACAGA 824 consensus_4036#1 TGGTTAACATTGTGAACCTGCT---------CCAGTGCAGCCTTAAATTGTAGAAACAGA 446 ********************** ***************************** consensus_4036#0 AGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACT 884 consensus_4036#1 AGGTTGTCATCATGATCTATCTTCAACAGATGTGGTTTCACATTCTCAGCAGCAGCCACT 506 ************************************************************ consensus_4036#0 AATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCT 944 consensus_4036#1 AATTTGAACGCTTCGGGCGCTCTAATGGCATTGCAGAAGTTAACCACAATATCGTGTGCT 566 ************************************************************ consensus_4036#0 ACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACA 1004 consensus_4036#1 ACATTCACGATTTTACGCACCTCGTCTTGTCGACCGATCTTGATGAACTGGAAGGCGACA 626 ************************************************************ consensus_4036#0 TCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGG 1064 consensus_4036#1 TCCCGTAGGGAAATAAGCACATCCTCCAGCCTCTTGCCAAGATGGTGGGGTTGCTCCTGG 686 ************************************************************ consensus_4036#0 GATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGG 1124 consensus_4036#1 GATTCACACGGTGAGGGCGGCGAGGGGGCGACCGTGTCCGAGGCGCGCGCGTCCCCCTGG 746 ************************************************************ consensus_4036#0 TCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGG 1184 consensus_4036#1 TCGAGGTCGAGGACGCCCGCCGGCCGGGGCGGCGCCGAGGAGGCGGCTCGTCGTAGACGG 806 ************************************************************ consensus_4036#0 CGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGG 1244 consensus_4036#1 CGCACCTCCCCAATCAGCTCCTTGAGAGTCCAGCCCTCGTACGGGCGACCGCGGGATCGG 866 ************************************************************ consensus_4036#0 GTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCG 1304 consensus_4036#1 GTGGCAGCCACGGGCGGCAAGCTCTGTGGTGAAGCGGGCCGAGGGGGCGCCATGGCGGCG 926 ************************************************************ consensus_4036#0 CGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGA-- 1362 consensus_4036#1 CGGCGAGGAAGGAGTCGGGAGTTAGGGCTCGGGTGATATCGACGGGGACGGCCGGGGAGG 986 ********************************************************** consensus_4036#0 --------- consensus_4036#1 GCGAAATGG 995 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||