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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094336 [ACCATCGATCGATTTTCCNCCCTCGCCGGAATTTAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTTCGGCGGGTACACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTANAGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGTAATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT]
[+] EMBL AK062637 [CGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTTCGGCGCCGGCGGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT]
consensusID : consensus_4047#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACCCCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGCCCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGTGCCCTTTGGGGGGTTTCG]
[+] EMBL C73517 [GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACCCCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCTCCACCTCGCCGGAGTTGAGAGAGACGACGCTGCAGGGATCGAGATCGAGATCAGAGAGGTTGGCAATGGCGGCGCGCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGCGCCGTGGCGGTGACGGCGGCGAGGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNNCCGGGCCGCCGTTGNGGGGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCGGGTACAACGGCCCGTTCGGCGGCGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGCCGGCGGGGTGCCCTTTGGGGGGTTTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4047#0 ------------------------------------------------------------
consensus_4047#1 ------------------------------------------------------------
consensus_4047#2 GCTCCCGCCATTAATCGCTTCCTCCAACTCCCCATCGTCTCTCCTCCTCCCCTTTAAACC 60
consensus_4047#0 ---------------------------ACCATCGATCGATTTTCCNCCCTCGCCGGAATT 33
consensus_4047#1 ------------------------------------CGATCT--CCACCTCGCCGGAGTT 22
consensus_4047#2 CCCTCTCCTCTCGCCTCCCGCTCCACCACCATCGATCGATCT--CCACCTCGCCGGAGTT 118
**** * * ********** **
consensus_4047#0 TAAAAAAGCGACNCTGCAGGGATCGAGATCGAGATCCAGAAAGGTTGGCAATGGCGGCGC 93
consensus_4047#1 GAGAGAGACGACGCTGCAGGGATCGAGATCGAGATC-AGAGAGGTTGGCAATGGCGGCGC 81
consensus_4047#2 GAGAGAGACGACGCTGCAGGGATCGAGATCGAGATC-AGAGAGGTTGGCAATGGCGGCGC 177
* * * **** *********************** *** *******************
consensus_4047#0 GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTNACGGCGGCGA 153
consensus_4047#1 GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGCCTCGCCGCCGTGGCGGTGACGGCGGCGA 141
consensus_4047#2 GCGTGGCGGTTGTCCTCCTGCTACTGTTCGGTCTCGC-GCCGTGGCGGTGACGGCGGCGA 236
******************************* ***** *********** **********
consensus_4047#0 GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGG 213
consensus_4047#1 GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGCCGCCGGCGCCGCCGGCGTGG 201
consensus_4047#2 GGATCATGCCCGACGACGACTGCGGCGACACGGCGAACGNN-CCGG-GCCGCCGTTGNGG 294
*************************************** **** ******* * **
consensus_4047#0 GGGAAGCCAAGACGGCGTTCGGCGGGANCGACGGCCGCGGGGGGCTNTT-CGGCGGGTAC 272
consensus_4047#1 GGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTCTT-CGGCG----- 255
consensus_4047#2 GGGAAGCCAAGACGGCGTTCGGCGGGAGCGACGGCCGCGGGGGGCTTTTTCGGCG----- 349
*************************** ****************** ** *****
consensus_4047#0 ACCGGCCCGCTCGGCGGCGGCGCCGCCGGGTTCGGCCCCTTCGGCGGGTTCGGCGCCGGC 332
consensus_4047#1 -------------------------------------------------------CCGGC 260
consensus_4047#2 -------------------------------------------------------GGTAC 354
*
consensus_4047#0 GGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTC 392
consensus_4047#1 GGCGGGCCGTTCGGCGGGTTCGGCGGCGGAGTTGGCCTCGGCGGCGGCGGCGGAGGATTC 320
consensus_4047#2 AACGGCCCGTTCGGCGG---CGGCGCNGAGGTTTCGGCCCCTTTCGGCGGGGTTNGGCGC 411
*** *********** ***** * *** * ****** * * *
consensus_4047#0 CGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCA 452
consensus_4047#1 CGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCA 380
consensus_4047#2 CGGCGG------GGTGCCCTTTGGGGGGTTTCG--------------------------- 438
**** * * ** * * ** * *
consensus_4047#0 ATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTA 512
consensus_4047#1 ATTAATGTGATTCCACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTA 440
consensus_4047#2 ------------------------------------------------------------
consensus_4047#0 CTAATGTACGGTNANATGTATCTACCGTACGCTGGAGTTTGTACGGCTATCGTTGATTAN 572
consensus_4047#1 CTAATGTACGGTGAGATGTATCTACCGTACGCTGGAGTTTGTACGGCT------------ 488
consensus_4047#2 ------------------------------------------------------------
consensus_4047#0 AGATTTCTCTTGTGTTGCTTAAGTGTTTGTGTGTGTGTTCATTGAGTTGTTTTGTGTTGT 632
consensus_4047#1 ------------------------------------------------------------
consensus_4047#2 ------------------------------------------------------------
consensus_4047#0 AATTTGCTAAACTTTCAAGTGCTTATCTATGAAAAAAAAAAAAAAAAAAA 682
consensus_4047#1 --------------------------------------------------
consensus_4047#2 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||