These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2014 fasta sequence [CCCGCGCGATGACTCCGCCGCCACGAATCCCCGCTGCCTCCTCCCTCCTCCTCCCTCCCCCATGCCTAGGGAGGCCACGATGGGCTCCTGGCCAGTCACCGCCGCCAGCAATGCCCGACAACGCAACGCCCTACTACGCCAAGGGAAGGCCACGAGGGGCTTCCCGCTTGCCGTCGCGGCCGCCATGCCCTCCTCCGCACTGGACCGCTGCCACTCACTCCGCGCCCGGCGACACTATGGCCTCCCTCTGTCGCACCAAAGGGAGCTTCCCATTCACCGCCTCCATCGTGTCGTGAGGGACCTCCACTTGTGGCACTTCTGACGCTGCGACGCAGTGGAGGGCATTGCCTCTGGTGGCACCATGGTTCTACTGCCATTTACCGGAATCATATCATTTAGTGGTTTCAATCTCTTCTCCCCCTTCCAATTCATTGTTTTGTTTCTGCAATTTGGTTGACAAAGCAAGTTCCTTTATTGTCTGGACATACTGTATTTTGCCCAGTAGGTGTTCAATTAAATGCCACTGAAATAATCTGAATCAGAGCCGGTTTAATCATGCATCTACGTGGACACATCCTTTAGTTTTATTGTCTAATAGGTATTGATTATGTATATAGCAGTGCCATAAGAATTTTTCTCTACAGCTCATTCAAGCATTCAACAATGCTGGGCTGATTTTTGGAATGAGCAATATAAGTTTAACATTGTTCCATGTTTTTGCTTGTAGGATGTATACTTCTATTGTTGTCCTTACCCTCATACCTGCGTATGTGTAGTAATAAATATTGGTTGCATAAGAATGACACAGAAGACTGAGTGGGTCTTTGTTGCGAACCCAAAAGGCCTATAGATCTTACTGGTAATTCCTACAAGGACCAAACTCCATTTATAGATATTTGCACATTTATGCTATTTGCTTTTGCTTGTTCTGTACAATATTCTCCTATTTACCCTCTGGGGTCAACCTGTACTCAACACGTGCCACACCAATCTCAACCTATATCCAACATGTGCCACACTAATCTCAGGCTGGTATTGAATCTGCCACTGCCAGTGCAACAAAAAAACTAATGGTGAGGATGGTAATAGAATAAATCACAATGCTAATGTGCAGCCTCTAGACATATTGCAAGGAATTTGGCATCAATGTTTTTCTGTTACTGTATTTTCTATGTATCTGTCAATGCTTGACTGAATATTTTATTGCCATTTAACCACCCATGATGTGTTAATGCCACAAGCAGCTATGATAGACGGTGATGATGACAACGATGATGAAAGTTATCTCATGAGAGGTCAAGGTTGAATTTGATTGGAAATCAGCTCTGCAATGTCCTCTCAATCAAGGAGGAGCCTATGTCGATTACTTGAGCTTTTTAGCCATGTTAATGATTGTTGATATCGCTTGTAATCTTTGTCTCCAACAACACATTGCTCACAAGTGGGCTGGTTGAACTCCATATGAATGTGCATAAACTCAAGTGAAATTTGGGGCCACTTTAAAGAAGAGGGGCGAAGAAGATCTGTAAGTTAGAAGGTGAGCAACATGGATGGTGATGGTGTTCTGACGTCCAAATATGAAACCAGCCAACCAGCTTGGCAGCCTGAAGATCTTTTGGACCAAAAGGGCAGGCCTCTTTCCCAAGGTGAAGCACTTCGTAGCTACAATATGCGAGTGCTCAGCCTATACACCATATCCTTATATGAGTATGCTGAGAGTTTTATTCTCCATTGAGGTGAAGTATGCTCAAAAGTTTCGTTAAAATATATTCAGTTTAGTGATTTTGTTCATGAACTAACTCACTTCACTACCATGAACTCATTTCTCCAAAATTTTGGATCTTTTATTAGCAAATCTATGGACTGAAGTGGGGTTTTGGCCAGAGCTCCAATCCCCTGCAAATCCCAAATGCAGTACGAGTAATATTTTGCAAAATTATGTACTCCAGTTCTATTGGAATTGATGTAAAACCAACAAATTCTTAGTTTTGTCAGTTATTAAAACGCATAGATG] [+] EMBL AK071936 [CCCGCGCGATGACTCCGCCGCCACGAATCCCCGCTGCCTCCTCCCTCCTCCTCCCTCCCCCATGCCTAGGGAGGCCACGATGGGCTCCTGGCCAGTCACCGCCGCCAGCAATGCCCGACAACGCAACGCCCTACTACGCCAAGGGAAGGCCACGAGGGGCTTCCCGCTTGCCGTCGCGGCCGCCATGCCCTCCTCCGCACTGGACCGCTGCCACTCACTCCGCGCCCGGCGACACTATGGCCTCCCTCTGTCGCACCAAAGGGAGCTTCCCATTCACCGCCTCCATCGTGTCGTGAGGGACCTCCACTTGTGGCACTTCTGACGCTGCGACGCAGTGGAGGGCATTGCCTCTGGTGGCACCATGGTTCTACTGCCATTTACCGGAATCATATCATTTAGTGGTTTCAATCTCTTCTCCCCCTTCCAATTCATTGTTTTGTTTCTGCAATTTGGTTGACAAAGCAAGTTCCTTTATTGTCTGGACATACTGTATTTTGCCCAGTAGGTGTTCAATTAAATGCCACTGAAATAATCTGAATCAGAGCCGGTTTAATCATGCATCTACGTGGACACATCCTTTAGTTTTATTGTCTAATAGGTATTGATTATGTATATAGCAGTGCCATAAGAATTTTTCTCTACAGCTCATTCAAGCATTCAACAATGCTGGGCTGATTTTTGGAATGAGCAATATAAGTTTAACATTGTTCCATGTTTTTGCTTGTAGGATGTATACTTCTATTGTTGTCCTTACCCTCATACCTGCGTATGTGTAGTAATAAATATTGGTTGCATAAGAATGACACAGAAGACTGAGTGGGTCTTTGTTGCGAACCCAAAAGGCCTATAGATCTTACTGGTAATTCCTACAAGGACCAAACTCCATTTATAGATATTTGCACATTTATGCTATTTGCTTTTGCTTGTTCTGTACAATATTCTCCTATTTACCCTCTGGGGTCAACCTGTACTCAACACGTGCCACACCAATCTCAACCTATATCCAACATGTGCCACACTAATCTCAGGCTGGTATTGAATCTGCCACTGCCAGTGCAACAAAAAAACTAATGGTGAGGATGGTAATAGAATAAATCACAATGCTAATGTGCAGCCTCTAGACATATTGCAAGGAATTTGGCATCAATGTTTTTCTGTTACTGTATTTTCTATGTATCTGTCAATGCTTGACTGAATATTTTATTGCCATTTAACCACCCATGATGTGTTAATGCCACAAGCAGCTATGATAGACGGTGATGATGACAACGATGATGAAAGTTATCTCATGAGAGGTCAAGGTTGAATTTGATTGGAAATCAGCTCTGCAATGTCCTCTCAATCAAGGAGGAGCCTATGTCGATTACTTGAGCTTTTTAGCCATGTTAATGATTGTTGATATCGCTTGTAATCTTTGTCTCCAACAACACATTGCTCACAAGTGGGCTGGTTGAACTCCATATGAATGTGCATAAACTCAAGTGAAATTTGGGGCCACTTTAAAGAAGAGGGGCGAAGAAGATCTGTAAGTTAGAAGGTGAGCAACATGGATGGTGATGGTGTTCTGACGTCCAAATATGAAACCAGCCAACCAGCTTGGCAGCCTGAAGATCTTTTGGACCAAAAGGGCAGGCCTCTTTCCCAAGGTGAAGCACTTCGTAGCTACAATATGCGAGTGCTCAGCCTATACACCATATCCTTATATGAGTATGCTGAGAGTTTTATTCTCCATTGAGGTGAAGTATGCTCAAAAGTTTCGTTAAAATATATTCAGTTTAGTGATTTTGTTCATGAACTAACTCACTTCACTACCATGAACTCATTTCTCCAAAATTTTGGATCTTTTATTAGCAAATCTATGGACTGAAGTGGGGTTTTGGCCAGAGCTCCAATCCCCTGCAAATCCCAAATGCAGTACGAGTAATATTTTGCAAAATTATGTACTCCAGTTCTATTGGAATTGATGTAAAACCAACAAATTCTTAGTTTTGTCAGTTATTAAAACGCATAGATG] [+] EMBL CB674307 [ CCGCTGCCTCCTCCCTCCTCCTCCCTCCCCCATGCCTAGGGAGGCCACGATGGGCTCCTGGCCAGTCACCGCCGCCAGCAATGCCCGACAACGCAACGCCCTACTACGCCAAGGGAAGGCCACGAGGGGCTTCCCGCTTGCCGTCGCGGCCGCCATGCCCTCCTCCGCACTGGACCGCTGCCACTCACTCCGCGCCCGGCGACACTATGGCCTCCCTCTGTCGCACCAAAGGGAGCTTCCCATTCACCGCCTCCATCGTGTCGTGAGGGACCTCCACTTGTGGCACTTCTGACGCTGCGACGCAGTGGAGGGCATTGCCTCTGGTGGCACCATGGTTCTACTGCCATTTACCGGAATCATATCATTTAGTGGTTTCAATCTCTTCTCCCCCTTCCAATTCATTGTTTTGTTTCTGCAATTTGGTTGACAAAGCAAGTTCCTTTATTGTCTGGACATACTGTATTTTGCCCAGTAGGTGTTCAATTAAATGCCACTGAAATAATCTGAATCAGAGCCGGTTTAATCATGCATCTACGTGGACACATCCTTTAGTTTTATTGTCTAATAGGTATTGATTATGTATATAGCAGTGCCATAAGAATTTTTCTCTACAGCTCATTCAAGCATTCAACAATGCTGGGCTGATTTTTGGAATGAGCAATATAAGTTTAACATTGTTCCATGTTTTTGCTTGTAGGATGTATACTTCTATTGTTGTCCTTACCCTCATACCTGCGTATGTGTAGTAATAAATATTGGTTGCATAAGAATGACACAGAAGACTGAGT ] consensusID : consensus_4048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence [ATTTGATTGGAAATCAGCTCTGCAATGTCCTTTCAATCAAGGAGGAGCCTATGTCGATTACTTGAGCTTTTTAGCCATGTTAATGATTGTGGATATCGCTTGTAATCTTTGTTTCCAACAACACATTGTTCACAAGGGGGGGGGTTGAACTCCATATGAATGGGCATAAACTCAAGGGAAATTTGGGGCCCCTTTAAAGAAGAGGGGGGAAGAAGATTTGTAAGTTAGAAGGTGAGCAACATGGATGGGGATGGTGTTTTGACGTCCAAATATGAAACCAGCCAACCAGCTTGGCAGCCTGAAGATTTTTTGGACCAAAAGGGCAGGCCTTTTTCCCAAGGGGAAGCCCTTGGTAGTTACAATATGGGAGGGTTCAGCCTATACCCCATATCCTTATATGAGTATGGGGGGAGTTTTTTTTTCCATTGAGCAAATTTATGGACTGAAGGGGGGTTTTGGCCAGAGCTCCAATCCCCTGCAAATCCCAAATGCAGTAGGGGTAATATTTTGCAAAATTATGTACTCCAGTTTTTTTGGAATTGATGTAAAACCAACAAATTTTTAGTTTTGTCAGTTATTAAAACGCATAGATGCATATTGGGTATGCCATTATATCAAACGGGGGTTGCACGTACATGATTATTAGTAACTACAAAAAGAACGTCCCTCTTGGAACGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA] [-] EMBL CB674308 [ATTTGATTGGAAATCAGCTCTGCAATGTCCTTTCAATCAAGGAGGAGCCTATGTCGATTACTTGAGCTTTTTAGCCATGTTAATGATTGTGGATATCGCTTGTAATCTTTGTTTCCAACAACACATTGTTCACAAGGGGGGGGGTTGAACTCCATATGAATGGGCATAAACTCAAGGGAAATTTGGGGCCCCTTTAAAGAAGAGGGGGGAAGAAGATTTGTAAGTTAGAAGGTGAGCAACATGGATGGGGATGGTGTTTTGACGTCCAAATATGAAACCAGCCAACCAGCTTGGCAGCCTGAAGATTTTTTGGACCAAAAGGGCAGGCCTTTTTCCCAAGGGGAAGCCCTTGGTAGTTACAATATGGGAGGGTTCAGCCTATACCCCATATCCTTATATGAGTATGGGGGGAGTTTTTTTTTCCATTGAGCAAATTTATGGACTGAAGGGGGGTTTTGGCCAGAGCTCCAATCCCCTGCAAATCCCAAATGCAGTAGGGGTAATATTTTGCAAAATTATGTACTCCAGTTTTTTTGGAATTGATGTAAAACCAACAAATTTTTAGTTTTGTCAGTTATTAAAACGCATAGATGCATATTGGGTATGCCATTATATCAAACGGGGGTTGCACGTACATGATTATTAGTAACTACAAAAAGAACGTCCCTCTTGGAACGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4048#0 CCCGCGCGATGACTCCGCCGCCACGAATCCCCGCTGCCTCCTCCCTCCTCCTCCCTCCCC 60 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CATGCCTAGGGAGGCCACGATGGGCTCCTGGCCAGTCACCGCCGCCAGCAATGCCCGACA 120 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 ACGCAACGCCCTACTACGCCAAGGGAAGGCCACGAGGGGCTTCCCGCTTGCCGTCGCGGC 180 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CGCCATGCCCTCCTCCGCACTGGACCGCTGCCACTCACTCCGCGCCCGGCGACACTATGG 240 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CCTCCCTCTGTCGCACCAAAGGGAGCTTCCCATTCACCGCCTCCATCGTGTCGTGAGGGA 300 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CCTCCACTTGTGGCACTTCTGACGCTGCGACGCAGTGGAGGGCATTGCCTCTGGTGGCAC 360 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CATGGTTCTACTGCCATTTACCGGAATCATATCATTTAGTGGTTTCAATCTCTTCTCCCC 420 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CTTCCAATTCATTGTTTTGTTTCTGCAATTTGGTTGACAAAGCAAGTTCCTTTATTGTCT 480 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 GGACATACTGTATTTTGCCCAGTAGGTGTTCAATTAAATGCCACTGAAATAATCTGAATC 540 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 AGAGCCGGTTTAATCATGCATCTACGTGGACACATCCTTTAGTTTTATTGTCTAATAGGT 600 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 ATTGATTATGTATATAGCAGTGCCATAAGAATTTTTCTCTACAGCTCATTCAAGCATTCA 660 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 ACAATGCTGGGCTGATTTTTGGAATGAGCAATATAAGTTTAACATTGTTCCATGTTTTTG 720 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 CTTGTAGGATGTATACTTCTATTGTTGTCCTTACCCTCATACCTGCGTATGTGTAGTAAT 780 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 AAATATTGGTTGCATAAGAATGACACAGAAGACTGAGTGGGTCTTTGTTGCGAACCCAAA 840 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 AGGCCTATAGATCTTACTGGTAATTCCTACAAGGACCAAACTCCATTTATAGATATTTGC 900 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 ACATTTATGCTATTTGCTTTTGCTTGTTCTGTACAATATTCTCCTATTTACCCTCTGGGG 960 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 TCAACCTGTACTCAACACGTGCCACACCAATCTCAACCTATATCCAACATGTGCCACACT 1020 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 AATCTCAGGCTGGTATTGAATCTGCCACTGCCAGTGCAACAAAAAAACTAATGGTGAGGA 1080 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 TGGTAATAGAATAAATCACAATGCTAATGTGCAGCCTCTAGACATATTGCAAGGAATTTG 1140 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 GCATCAATGTTTTTCTGTTACTGTATTTTCTATGTATCTGTCAATGCTTGACTGAATATT 1200 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 TTATTGCCATTTAACCACCCATGATGTGTTAATGCCACAAGCAGCTATGATAGACGGTGA 1260 consensus_4048#1 ------------------------------------------------------------ consensus_4048#0 TGATGACAACGATGATGAAAGTTATCTCATGAGAGGTCAAGGTTGAATTTGATTGGAAAT 1320 consensus_4048#1 ----------------------------------------------ATTTGATTGGAAAT 14 ************** consensus_4048#0 CAGCTCTGCAATGTCCTCTCAATCAAGGAGGAGCCTATGTCGATTACTTGAGCTTTTTAG 1380 consensus_4048#1 CAGCTCTGCAATGTCCTTTCAATCAAGGAGGAGCCTATGTCGATTACTTGAGCTTTTTAG 74 ***************** ****************************************** consensus_4048#0 CCATGTTAATGATTGTTGATATCGCTTGTAATCTTTGTCTCCAACAACACATTGCTCACA 1440 consensus_4048#1 CCATGTTAATGATTGTGGATATCGCTTGTAATCTTTGTTTCCAACAACACATTGTTCACA 134 **************** ********************* *************** ***** consensus_4048#0 AGTGGGCTGGTTGAACTCCATATGAATGTGCATAAACTCAAGTGAAATTTGGGGCCACTT 1500 consensus_4048#1 AGGGGGGGGGTTGAACTCCATATGAATGGGCATAAACTCAAGGGAAATTTGGGGCCCCTT 194 ** *** ******************** ************* ************* *** consensus_4048#0 TAAAGAAGAGGGGCGAAGAAGATCTGTAAGTTAGAAGGTGAGCAACATGGATGGTGATGG 1560 consensus_4048#1 TAAAGAAGAGGGGGGAAGAAGATTTGTAAGTTAGAAGGTGAGCAACATGGATGGGGATGG 254 ************* ********* ****************************** ***** consensus_4048#0 TGTTCTGACGTCCAAATATGAAACCAGCCAACCAGCTTGGCAGCCTGAAGATCTTTTGGA 1620 consensus_4048#1 TGTTTTGACGTCCAAATATGAAACCAGCCAACCAGCTTGGCAGCCTGAAGATTTTTTGGA 314 **** *********************************************** ******* consensus_4048#0 CCAAAAGGGCAGGCCTCTTTCCCAAGGTGAAGCACTTCGTAGCTACAATATGCGAGTGCT 1680 consensus_4048#1 CCAAAAGGGCAGGCCTTTTTCCCAAGGGGAAGCCCTTGGTAGTTACAATATGGGAGGGTT 374 **************** ********** ***** *** **** ********* *** * * consensus_4048#0 CAGCCTATACACCATATCCTTATATGAGTATGCTGAGAGTTTTATTCTCCATTGAGGTGA 1740 consensus_4048#1 CAGCCTATACCCCATATCCTTATATGAGTATGGGGGGAGTTTTTTTTTCCATTGAGCAAA 434 ********** ********************* * ******* ** ********* * consensus_4048#0 AGTATGCTCAAAAG------TTTCGTTAAAATAT--ATTCAGTTTAGTGATTTTGTTCAT 1792 consensus_4048#1 TTTATGGACTGAAGGGGGGTTTTGGCCAGAGCTCCAATCCCCTGCAAATCCCAAATGCAG 494 **** * *** *** * * * ** * * * * ** consensus_4048#0 --GAACTAACTCACTTCACTACCATGAACTC--ATTTCTCCAAAATTTTGGATCTTTTAT 1848 consensus_4048#1 TAGGGGTAATATTTTGCAAAATTATGTACTCCAGTTTTTTTGGAATT---GATGTAAAAC 551 * *** * ** * *** **** *** * **** *** * * consensus_4048#0 TAGCAAATCTATGGACTGAAGTGGGGTTTTGGC-CAGAGCTCCAATCC---CCTGCAA-- 1902 consensus_4048#1 CAACAAATTTTTAGTTTTGTCAGTTATTAAAACGCATAGATGCATATTGGGTATGCCATT 611 * ***** * * * * * ** * ** ** * ** *** * consensus_4048#0 ATCCCAAATGCAG--TACGAGTA----ATATTTTGCAAAATTATGTACTCCAGTTCTATT 1956 consensus_4048#1 ATATCAAACGGGGGTTGCACGTACATGATTATTAGTAACTACAAAAAGAACGTCCCTCTT 671 ** **** * * * * *** ** ** * ** * * * ** ** consensus_4048#0 GGAATTGATGTAAAACCAACAAATTCTTAGTTTTGTCAGTTATTAAAACGCATAGATG- 2014 consensus_4048#1 GGAACGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA 730 **** *** *** ** *** * * * **** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||