These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAAAAGGAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGACCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTTGCCGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAAAAAAGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGATTCGTTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAATAA-ATCC-TTAGATCC-AAAAAAAACACGAGAAATTTCTTTCGTCCGATCTTTCTTTTTGTAGAANANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC] [+] EMBL BE039219 [CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAAAAGGAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGACCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTTGCCGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAAAAAAGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGATTCGTTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAATAA ATCC TTAGATCC AAAAAAAACACGAGAAATTTCTTTCGTCCGA ] [+] EMBL CA758801 [ TACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAAAAGAAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAAAAAAATCTTATCCGACCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGCTGCTGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGCCGGTGGTGGTGTGAAAAAAGGAGCGAAGAAAAATGCCGCTGC TGCTGCTGCCGAAGAAGCTGCAGCTGAATAGATTCGTTTTC GTTTTGTTTC TTTTTTGAAAATAAAAACATAAGAAG AAAAATT AAAATAAGATCCATAAGATCCAAAAAAAAACAAAAGAAATATCATTCGTACGATCTTTCTTTTTGTAGAANANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC] consensusID : consensus_4054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CAGCTAAAGCAGCTCCCAAGAAAACCGAANAAAAACCTTCCGAAGGTTCATCTGGAAGTAAAGCAAAAAAGAAGAAATGGTCGAAAGGAAAAGTTCGAGATAAACTTAATAACATGGTTCTCTTTGATAAACCAACCTATGATAAATGCGTCAAAGATCTACCCCAATATAAACTCATAACGCCGGCTATTATTTGCGAACGTTTTAAAGTTCGTGGTTCGCTTGCACGAGCTATTCTTCGTGAACTTACNAAGAANAATCTTATTCGACCTGTTGTTAAACATAGTCGACAAGAAATCTATACACGTGCAACGAAAGAAGAAATACCATCTGAACAAGATGCTGGCNAGGAAGTTGCTCAAGAAAAGAAAGGTGGTGGCGGTGTTAAGAAAGGTGCTAAGAAAGCTGCAGCTGCCGCTGAAGAAGTCGCAGCCGAATAGATNTGGAATACNATGAANATAANACAATAANAGAAATTTGGTTTTTTGTTTTGGNTTTTTTTGGCTTTTGGTTTTATGAANATAANACANAGAANAAACAAGATTAACAAGAACATAGGANAAAAAAA] [+] EMBL CA755026 [CAGCTAAAGCAGCTCCCAAGAAAACCGAANAAAAACCTTCCGAAGGTTCATCTGGAAGTAAAGCAAAAAAGAAGAAATGGTCGAAAGGAAAAGTTCGAGATAAACTTAATAACATGGTTCTCTTTGATAAACCAACCTATGATAAATGCGTCAAAGATCTACCCCAATATAAACTCATAACGCCGGCTATTATTTGCGAACGTTTTAAAGTTCGTGGTTCGCTTGCACGAGCTATTCTTCGTGAACTTACNAAGAANAATCTTATTCGACCTGTTGTTAAACATAGTCGACAAGAAATCTATACACGTGCAACGAAAGAAGAAATACCATCTGAACAAGATGCTGGCNAGGAAGTTGCTCAAGAAAAGAAAGGTGGTGGCGGTGTTAAGAAAGGTGCTAAGAAAGCTGCAGCTGCCGCTGAAGAAGTCGCAGCCGAATAGATNTGGAATACNATGAANATAANACAATAANAGAAATTTGGTTTTTTGTTTTGGNTTTTTTTGGCTTTTGGTTTTATGAANATAANACANAGAANAAACAAGATTAACAAGAACATAGGANAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4054#0 CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAA 60 consensus_4054#1 -------------------------------CAGCTAAAGCAGCTCCCAAGAAAACCGAA 29 **** ** ****** **** *** ***** consensus_4054#0 AAGGAACCT---GAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGA 117 consensus_4054#1 NAAAAACCTTCCGAAGGTTCATCTGGAAGTAAAGCAAAAAAGAAGAAATGGTCGAAAGGA 89 * ***** *********** ** * ** ** ** ******** ************ consensus_4054#0 AAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGC 177 consensus_4054#1 AAAGTTCGAGATAAACTTAATAACATGGTTCTCTTTGATAAACCAACCTATGATAAATGC 149 ***** ** ** ******** ******** * ** ** *** * ** ** ** ****** consensus_4054#0 GTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAA 237 consensus_4054#1 GTCAAAGATCTACCCCAATATAAACTCATAACGCCGGCTATTATTTGCGAACGTTTTAAA 209 ** ****** * ** ***** *** * ** ** ** ***** ** ** ************ consensus_4054#0 GTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGA 297 consensus_4054#1 GTTCGTGGTTCGCTTGCACGAGCTATTCTTCGTGAACTTACNAAGAANAATCTTATTCGA 269 *********** ** *********************** * ***** ******** *** consensus_4054#0 CCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTT 357 consensus_4054#1 CCTGTTGTTAAACATAGTCGACAAGAAATCTATACACGTGCAACGAAAGAAGAAATACCA 329 ** ************** *********** ** ***** ***** ******** * consensus_4054#0 GCCGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAA 417 consensus_4054#1 TCTGAACAAGATGCTGGCNAGGAAGTTGCTCAAGAAAAGAAAGGTGGTGGCGGTGTTAAG 389 * ******** **** * * **** * ************ ***** ***** ** consensus_4054#0 AAAAGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGAT 477 consensus_4054#1 AAAGGTGCTAAGAAAGCTGCAGC-------TGCCGCTGAAGAAGTCGCAGCCGAATAGAT 442 *** * ** ****** *** ** *** ** ****** ***** ****** consensus_4054#0 TCGTTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAAT 537 consensus_4054#1 NTGGAATACNATGAANATAANACAATAANAGAAATTTGGTTTTTTGTTTTGGNTTTTTTT 502 * * * * * * ** *** * * * consensus_4054#0 AAATCCTTAGATCCAAAAAAAACACGAGAAATTTCTTTCGTCCGATCTTTCTTTTTGTAG 597 consensus_4054#1 GG--CTTTTGGTTTTATGAANATAANACANA--------GAANAAACAAGATTAACA-AG 551 * ** * * * ** * * * * * * * * ** ** consensus_4054#0 AANANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC 636 consensus_4054#1 AACATAGGANAAAAAAA---------------------- 568 ** * ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||