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Oryza sativa
cluster # 406 cluster # 406       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_406#0 length = 1624 sequences # 2  

consensusID : consensus_406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1624
fasta sequence
                              [CCCGTCCACCCCGGGGGGTCCTATAGCCGACGTCGAGATGGTCCGTGGCAAGGACGGCGTGTGGACGGCGCGGCCGCCGACGGTGGTGGTGCTGTGGGACCTCGACAACAAGCCCCCGCGCGGGCCGCCGTTCCCGGCCGCCACCGCGCTCCGCGACGCGGCGTCCCTCTTCGGCCGCGTCGTGTCCGTCTCGGCCTTCGCCAACCGCCACGCCTTCTCCCACGTCCCCGCCTGGGTCGCCGACGAGCGCCGGGAGCGCCGCGCCATGGACCGCGCTGAGCGCGCCGGCGCCGCGTCCCCGCCCGTCCCTTACTCCTGCGCCGTGTGCGGCCGCCGCTTCCCCACCCGCCCCGACCTCACCCGCCACTTCCGCCAGCTCCACCAGCGCGAGCGCAACAAGAAGCTCTCGCGCCTCCGCTCCCTCAAGGGCAAGAAGCGGCAGAAGTTCCGCGAGCGCTTCATCTCCGGGAACACCAAGTACGACGACGCCGCGCGGGAGCTCCTCACCCCCAAGGTCGGGTACGGCCTCGCCGCCGAGCTCCGCCGCGCCGGCGTCCACGTCCGCACCGTCTCCGACAAGCCGCAGGCGGCCGATCACGCGCTCAAGCGCCAGGTGAAGCATTCCGTGGCCTGCGGCGTTGACTGGCTCGTGCTCGTCTCCGATGACTCCGATTTCACCGACACTGTGCGGAAAGCGCGCGCCGCCGACTTGAGAACGGTCGTGGTTGGCGATGGTTGCCGTGCTCTTGGAAGTGTGGCTGACATTTGGTTGCCATGGGACCGCGTCGAGAATGGGGAGGTTGATGAGGACATGCTGCGGAATGGGACACATATGGGATTCAGAGATGAAGAGGAAGATGAGCAAGATGATGATGAGTTCATAGTGGATTGGGATACGAGTGATTTGGATGGTGTTGTCGATGACATTGTCGCGACGAGGACCAAGTTGTTCGGTGCTACAACGATGTCTGCATTTGCTGATGAGGAAATTATGGATGGCATATCGGGTGTTGGGATAAATGGCGGTGACATGTTATGGAGTAGCGACGACGAGGATGAGGATGGTTATTTTTGAGATTCATGTAGATTGACAGGACTTGTGTTGTACTGCTATCAGCAAACCAAAAGGCATCATCGCATCGACACAAACACAGCTGAAAAAGAACGGCCATCTTCTAACATGCAGGCTGCAAATTCTGAATAACATCATCCTGTTGGGCACTTGGGCTGTAGCTGAAGCTGGAGAAAGAAGCTCATGGTTTGAGAGTTGGAGAAGCTGGCTGCACATTTCACATGAGAATCGCGTCCATTTCAATCAGGCACACAAGGTTACCTTCCAGCTGATTTCGACGAAGAAACAACTGTATGAGCATGTTTGTCGCGGCGAGGAGGTGGCAGCCATCCGAGTACAAGAAAGTAATTCCTACCTCTCCTGCCGGAGAAGCTCAGCTAAAATTGATTAGAAACACGAGATGTCGGGATAGTTCCTGGATGGCATTGCTGAACATGGATGCACTGACATGCATATCTCGACTATTAGCTGATGTATTGAGTAGAGTAAAGTATTACACCGAAGGCAAATTATCGAGTGCATGCCACTTTTTTGCTGTAAAAAAAAAAAAAA]

[+] EMBL AK106360             [CCCGTCCACCCCGGGGGGTCCTATAGCCGACGTCGAGATGGTCCGTGGCAAGGACGGCGTGTGGACGGCGCGGCCGCCGACGGTGGTGGTGCTGTGGGACCTCGACAACAAGCCCCCGCGCGGGCCGCCGTTCCCGGCCGCCACCGCGCTCCGCGACGCGGCGTCCCTCTTCGGCCGCGTCGTGTCCGTCTCGGCCTTCGCCAACCGCCACGCCTTCTCCCACGTCCCCGCCTGGGTCGCCGACGAGCGCCGGGAGCGCCGCGCCATGGACCGCGCTGAGCGCGCCGGCGCCGCGTCCCCGCCCGTCCCTTACTCCTGCGCCGTGTGCGGCCGCCGCTTCCCCACCCGCCCCGACCTCACCCGCCACTTCCGCCAGCTCCACCAGCGCGAGCGCAACAAGAAGCTCTCGCGCCTCCGCTCCCTCAAGGGCAAGAAGCGGCAGAAGTTCCGCGAGCGCTTCATCTCCGGGAACACCAAGTACGACGACGCCGCGCGGGAGCTCCTCACCCCCAAGGTCGGGTACGGCCTCGCCGCCGAGCTCCGCCGCGCCGGCGTCCACGTCCGCACCGTCTCCGACAAGCCGCAGGCGGCCGATCACGCGCTCAAGCGCCAGGTGAAGCATTCCGTGGCCTGCGGCGTTGACTGGCTCGTGCTCGTCTCCGATGACTCCGATTTCACCGACACTGTGCGGAAAGCGCGCGCCGCCGACTTGAGAACGGTCGTGGTTGGCGATGGTTGCCGTGCTCTTGGAAGTGTGGCTGACATTTGGTTGCCATGGGACCGCGTCGAGAATGGGGAGGTTGATGAGGACATGCTGCGGAATGGGACACATATGGGATTCAGAGATGAAGAGGAAGATGAGCAAGATGATGATGAGTTCATAGTGGATTGGGATACGAGTGATTTGGATGGTGTTGTCGATGACATTGTCGCGACGAGGACCAAGTTGTTCGGTGCTACAACGATGTCTGCATTTGCTGATGAGGAAATTATGGATGGCATATCGGGTGTTGGGATAAATGGCGGTGACATGTTATGGAGTAGCGACGACGAGGATGAGGATGGTTATTTTTGAGATTCATGTAGATTGACAGGACTTGTGTTGTACTGCTATCAGCAAACCAAAAGGCATCATCGCATCGACACAAACACAGCTGAAAAAGAACGGCCATCTTCTAACATGCAGGCTGCAAATTCTGAATAACATCATCCTGTTGGGCACTTGGGCTGTAGCTGAAGCTGGAGAAAGAAGCTCATGGTTTGAGAGTTGGAGAAGCTGGCTGCACATTTCACATGAGAATCGCGTCCATTTCAATCAGGCACACAAGGTTACCTTCCAGCTGATTTCGACGAAGAAACAACTGTATGAGCATGTTTGTCGCGGCGAGGAGGTGGCAGCCATCCGAGTACAAGAAAGTAATTCCTACCTCTCCTGCCGGAGAAGCTCAGCTAAAATTGATTAGAAACACGAGATGTCGGGATAGTTCCTGGATGGCATTGCTGAACATGGATGCACTGACATGCATATCTCGACTATTAGCTGATGTATTGAGTAGAGTAAAGTATTA                                                        ]
[-] EMBL CA760112             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAACGANGTCTGCATTTGCTGATGAGGAAATTATGGATGGCATATTGGGTGTTGGGATAAATGGCGGTGACATGTTATGGAGTAGCGACGACGAGGATGAGGATGGTTATTTNTGAGATTCATGTAGATTGACAGGACTTGTGTTGTACTGCTATCAGCAAACCAAAAGGCATTATCGCATCGACACAAACACAGCTGAAAAAGAACGGCCATCTTCTAACATGCAGGCTGCAAATTTTGAATAACATCATCCTGTTGGGCACTTGGGCTGTAGCTGAAGCTGGAGAAAGAAGCTCATGGTTCGAGAGTTGGAGAAGCTGGCTGCACATTTCACATGAGAATCGCGTCCATTTCAATTAGGCACACAAGGTTACCTTCCAGCTGATTTCGACGAAGAAACAACTGTATGAGCATGTTTGTCGCGGCGAGGAGGTGGCAGCCATCCGAGTACAAGAAAGTAATTCCTACCTCTCCTGCCGGAGAAGCTCAGCTAAAATTGATTAGAAACACGAGATGTCGGGATAGTTCCTGGATGGCATTGCTGAACATGGATGCACTGACATGCATATCTCGACTATTAGCTGATGTATTGAGTAGAGTAAAGTATTACACCGAAGGCAAATTATCGAGTGCATGCCACTTTTTTGCTGTAAAAAAAAAAAAAA]


>consensus_406#0 CCCGTCCACCCCGGGGGGTCCTATAGCCGACGTCGAGATGGTCCGTGGCAAGGACGGCGT GTGGACGGCGCGGCCGCCGACGGTGGTGGTGCTGTGGGACCTCGACAACAAGCCCCCGCG CGGGCCGCCGTTCCCGGCCGCCACCGCGCTCCGCGACGCGGCGTCCCTCTTCGGCCGCGT CGTGTCCGTCTCGGCCTTCGCCAACCGCCACGCCTTCTCCCACGTCCCCGCCTGGGTCGC CGACGAGCGCCGGGAGCGCCGCGCCATGGACCGCGCTGAGCGCGCCGGCGCCGCGTCCCC GCCCGTCCCTTACTCCTGCGCCGTGTGCGGCCGCCGCTTCCCCACCCGCCCCGACCTCAC CCGCCACTTCCGCCAGCTCCACCAGCGCGAGCGCAACAAGAAGCTCTCGCGCCTCCGCTC CCTCAAGGGCAAGAAGCGGCAGAAGTTCCGCGAGCGCTTCATCTCCGGGAACACCAAGTA CGACGACGCCGCGCGGGAGCTCCTCACCCCCAAGGTCGGGTACGGCCTCGCCGCCGAGCT CCGCCGCGCCGGCGTCCACGTCCGCACCGTCTCCGACAAGCCGCAGGCGGCCGATCACGC GCTCAAGCGCCAGGTGAAGCATTCCGTGGCCTGCGGCGTTGACTGGCTCGTGCTCGTCTC CGATGACTCCGATTTCACCGACACTGTGCGGAAAGCGCGCGCCGCCGACTTGAGAACGGT CGTGGTTGGCGATGGTTGCCGTGCTCTTGGAAGTGTGGCTGACATTTGGTTGCCATGGGA CCGCGTCGAGAATGGGGAGGTTGATGAGGACATGCTGCGGAATGGGACACATATGGGATT CAGAGATGAAGAGGAAGATGAGCAAGATGATGATGAGTTCATAGTGGATTGGGATACGAG TGATTTGGATGGTGTTGTCGATGACATTGTCGCGACGAGGACCAAGTTGTTCGGTGCTAC AACGATGTCTGCATTTGCTGATGAGGAAATTATGGATGGCATATCGGGTGTTGGGATAAA TGGCGGTGACATGTTATGGAGTAGCGACGACGAGGATGAGGATGGTTATTTTTGAGATTC ATGTAGATTGACAGGACTTGTGTTGTACTGCTATCAGCAAACCAAAAGGCATCATCGCAT CGACACAAACACAGCTGAAAAAGAACGGCCATCTTCTAACATGCAGGCTGCAAATTCTGA ATAACATCATCCTGTTGGGCACTTGGGCTGTAGCTGAAGCTGGAGAAAGAAGCTCATGGT TTGAGAGTTGGAGAAGCTGGCTGCACATTTCACATGAGAATCGCGTCCATTTCAATCAGG CACACAAGGTTACCTTCCAGCTGATTTCGACGAAGAAACAACTGTATGAGCATGTTTGTC GCGGCGAGGAGGTGGCAGCCATCCGAGTACAAGAAAGTAATTCCTACCTCTCCTGCCGGA GAAGCTCAGCTAAAATTGATTAGAAACACGAGATGTCGGGATAGTTCCTGGATGGCATTG CTGAACATGGATGCACTGACATGCATATCTCGACTATTAGCTGATGTATTGAGTAGAGTA AAGTATTACACCGAAGGCAAATTATCGAGTGCATGCCACTTTTTTGCTGTAAAAAAAAAA AAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)