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Oryza sativa
cluster # 4064 cluster # 4064       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4064#0 length = 1188 sequences # 2  
consensus_4064#1 length = 608 sequences # 1  

consensusID : consensus_4064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1188
fasta sequence
                              [GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACGGCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCGCGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTCGTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAGAAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAATGAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCTCTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAATTATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTAGATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCTACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAG-TTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGTTTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK120748             [GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACGGCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCGCGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTCGTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAGAAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAATGAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCTCTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAATTATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTAGATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCTACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAG TTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGTTTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTT                              ]
[-] EMBL CA762881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTAGTGCCCACCCATCTATCATCGCCCGTTGCCTTCACCCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACCCCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCCTTTCCCTGACGATATCACCGTCATCGTTTTATTCATAAATTATGGCCCATTAGCTAAAGGTCATTCCCAAGGGCAATCTCTATCCCTTAGATGTGCTTTAGATCCTTGATTATGAGCTAATCCTTCCCTGAATGATCAGTTTCTGTGGGCAACAATCGCTACTTTGATGGTTTCATCAACCATACCCTTGTGAACAGCCCCCAACCTCCTGCAGCAGTTTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCCCATAAAACTGACTACCTTTTAAATTGTCAGTTTTCCCCCCCAACGAATTGGATAAATGTGCATATTCCTGAAACTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA]


>consensus_4064#0 GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACG GCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCG CGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTC GTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAG AAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAAT GAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCT CTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGAT GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAG GCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATT GACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAAT TATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTA GATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCT ACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAGTTT TTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGT TTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAG TTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTT ACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_4064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAA]

[+] EMBL CB096882             [GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAA]


>consensus_4064#1 GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGAT CAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATC TATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTT GTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGT AAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCC TAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTT ATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCT TGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGG AGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACC TTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTA TGCATTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4064#0      GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACG 60
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      GCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCG 120
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      CGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTC 180
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      GTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAG 240
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      AAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAAT 300
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      GAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCT 360
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      CTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGAT 420
consensus_4064#1      --------------------------------------GGTGTCCAGATCATTAGGCGAT 22
                                                            **********************

consensus_4064#0      GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT 480
consensus_4064#1      GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT 82
                      ************************************************************

consensus_4064#0      GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA 540
consensus_4064#1      GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA 142
                      ************************************************************

consensus_4064#0      CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG 600
consensus_4064#1      CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG 202
                      ************************************************************

consensus_4064#0      CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAG 660
consensus_4064#1      CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTA---AC 259
                      ************************************* ***     * *   * *   * 

consensus_4064#0      GCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATT 720
consensus_4064#1      TTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGT-TGCCTAAGGGCTTGTTCAGTT- 317
                           * ** *        **        *  * **  *   * **  *** *  ** * 

consensus_4064#0      GACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAAT 780
consensus_4064#1      ---AATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATT-TATTCCACACATAT 373
                         **      ** ** *    *  * *  *** *    *  **  * **   ** * **

consensus_4064#0      TATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTA 840
consensus_4064#1      TGTGGT--GTGGAATTATTGCCCCTCA-----ATACTCTCCAATTCCC-----TCCTCTT 421
                      * **     *    * *  * *  ***       * **** *     *     * ** * 

consensus_4064#0      GATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCT 900
consensus_4064#1      GAGGATTAG--ACGAGCAAGGCCCA-----AGTGATCTTAAACAATTTGCAATATTTTAT 474
                      **  ***    * **** *  ** *     * *****     *  *  **** * *   *

consensus_4064#0      ACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAGTTT 960
consensus_4064#1      GACCGGA-GTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGA-ACGGTGAACC 532
                         * ** * ***   **   *     **** **     **  ** *    * *      

consensus_4064#0      TTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGT 1020
consensus_4064#1      TTGGAACCTTATTTCACCTGG-------AAATAATGCCT-TGATGTATTTTGCTATAATA 584
                      **    * ** ** *   ***       * ****  *     *  *  *    * * *  

consensus_4064#0      TTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAG 1080
consensus_4064#1      TTTACAATCAAATGTATGCATTAA------------------------------------ 608
                      *** *  ***** * **    ***                                    

consensus_4064#0      TTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTT 1140
consensus_4064#1      ------------------------------------------------------------
                                                                                  

consensus_4064#0      ACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA 1188
consensus_4064#1      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)