These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1188 fasta sequence [GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACGGCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCGCGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTCGTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAGAAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAATGAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCTCTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAATTATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTAGATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCTACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAG-TTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGTTTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK120748 [GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACGGCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCGCGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTCGTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAGAAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAATGAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCTCTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAATTATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTAGATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCTACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAG TTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGTTTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTT ] [-] EMBL CA762881 [ TTTAGTGCCCACCCATCTATCATCGCCCGTTGCCTTCACCCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACCCCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAGGCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATTGACAAGAAGGTTCGCAGGCCTTTCCCTGACGATATCACCGTCATCGTTTTATTCATAAATTATGGCCCATTAGCTAAAGGTCATTCCCAAGGGCAATCTCTATCCCTTAGATGTGCTTTAGATCCTTGATTATGAGCTAATCCTTCCCTGAATGATCAGTTTCTGTGGGCAACAATCGCTACTTTGATGGTTTCATCAACCATACCCTTGTGAACAGCCCCCAACCTCCTGCAGCAGTTTTTTTTTTCTTTTTTCCCTTTGGCTTTTGCCCATAAAACTGACTACCTTTTAAATTGTCAGTTTTCCCCCCCAACGAATTGGATAAATGTGCATATTCCTGAAACTGGAACTTTGCCTAGAGTTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTTACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAA] [+] EMBL CB096882 [GGTGTCCAGATCATTAGGCGATGCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCTGAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAACCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAGCAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTAACTTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGTTGCCTAAGGGCTTGTTCAGTTAATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATTTATTCCACACATATTGTGGTGTGGAATTATTGCCCCTCAATACTCTCCAATTCCCTCCTCTTGAGGATTAGACGAGCAAGGCCCAAGTGATCTTAAACAATTTGCAATATTTTATGACCGGAGTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGAACGGTGAACCTTGGAACCTTATTTCACCTGGAAATAATGCCTTGATGTATTTTGCTATAATATTTACAATCAAATGTATGCATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4064#0 GCCTGCGACCACCTCCTCCCCAACCTCCGAGAGGCCGCGTCCGGGCCGGAGGGCGTCACG 60 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 GCCGACGCCATCAGGGACGCGTTCCTGGCCACGGAGGAAGGCTTCCTCGCGGTCGTCTCG 120 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 CGGATGTGGGAGGCGCAGCCGGACATGGCCACCGTCGGGACGTGCTGCCTCGTCGGAGTC 180 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 GTGCACCAGAGGACGCTCTTCGTCGCCAACCTCGGGGATTCCAGGGCCGTTCTTGGGAAG 240 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 AAGGTTGGTCGCGCTGGTCAGATTACCGCCGAGCAACTGTCCAGTGAGCATAACGCCAAT 300 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 GAAGAGGATGTCAGGCAGGAGCTCATGGCTCAGCACCCAGATGATCCTCAGATTGTTGCT 360 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 CTTAAACATGGGGTTTGGAGAGTCAAGGGCATCATACAGGTGTCCAGATCATTAGGCGAT 420 consensus_4064#1 --------------------------------------GGTGTCCAGATCATTAGGCGAT 22 ********************** consensus_4064#0 GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT 480 consensus_4064#1 GCATATCTAAAGCATAGTCAGTATAACACGGAACAGATCAAACCAAAGTTCAGGCTCCCT 82 ************************************************************ consensus_4064#0 GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA 540 consensus_4064#1 GAACCATTCAGCAGGCCTATATTGAGTGCCAACCCATCTATCATCGCACGTTGCCTTCAA 142 ************************************************************ consensus_4064#0 CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG 600 consensus_4064#1 CCAAGTGATTGCTTCATCATATTTGCCTCCGATGGTTTGTGGGAACACCTGAGTAATCAG 202 ************************************************************ consensus_4064#0 CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGGAAGTGCAAGAAGGCTCATAAAG 660 consensus_4064#1 CAGGCTGTTGAGATTGTGCACAACCATCAACGAGCTGTAAGATTCTGCACATTTA---AC 259 ************************************* *** * * * * * consensus_4064#0 GCAGCTCTCCATGAAGCAGCACGGAAACGTGAGATGCGTTATTCAGACCTTATGAAGATT 720 consensus_4064#1 TTGTTTATCTACTGCTTCACATTCTGGTCTCTGCTGT-TGCCTAAGGGCTTGTTCAGTT- 317 * ** * ** * * ** * * ** *** * ** * consensus_4064#0 GACAAGAAGGTTCGCAGGCATTTCCATGACGATATCACTGTCATCGTCTTATTCATAAAT 780 consensus_4064#1 ---AATCCCTCTCACAAGGGGATTGAGGGGGATTTGGAGGGAATT-TATTCCACACATAT 373 ** ** ** * * * * *** * * ** * ** ** * ** consensus_4064#0 TATGACCAATTAGCTAAAGGTCATTCACAAGGGCAATCTCTATCCATCAGATGTGCTTTA 840 consensus_4064#1 TGTGGT--GTGGAATTATTGCCCCTCA-----ATACTCTCCAATTCCC-----TCCTCTT 421 * ** * * * * * *** * **** * * * ** * consensus_4064#0 GATCATTGATTATGAGCTAATCCTACCATGAATGATCAGTTTCTGTGGGCAACAATCGCT 900 consensus_4064#1 GAGGATTAG--ACGAGCAAGGCCCA-----AGTGATCTTAAACAATTTGCAATATTTTAT 474 ** *** * **** * ** * * ***** * * **** * * * consensus_4064#0 ACTCTGATGGTTTCATCAACCATACCATTGTGAACAGCCCACAACCTCCTGCAGCAGTTT 960 consensus_4064#1 GACCGGA-GTTTTTCCCACTGAATTTTTTGTTAAGGCTTCAGGACATGA-ACGGTGAACC 532 * ** * *** ** * **** ** ** ** * * * consensus_4064#0 TTTTTTCTTTTTTCCCTTTGGCTTTTGCACATAAAACTGACTACCTTCTAAATTGTCAGT 1020 consensus_4064#1 TTGGAACCTTATTTCACCTGG-------AAATAATGCCT-TGATGTATTTTGCTATAATA 584 ** * ** ** * *** * **** * * * * * * * consensus_4064#0 TTTCCCCTCAAACGAATCGGATAAATGTGCATATTCCTGAAGCTGGAACTTTGCCTAGAG 1080 consensus_4064#1 TTTACAATCAAATGTATGCATTAA------------------------------------ 608 *** * ***** * ** *** consensus_4064#0 TTGAGGGAGCTTTATTAAGGATTATCATGTATTTTTTAATTGATTCATTTGTTCTCGTTT 1140 consensus_4064#1 ------------------------------------------------------------ consensus_4064#0 ACATAAGCTAGTTTCTTTTGTATTGAGGAAAAAAAAAAAAAAAAAAAA 1188 consensus_4064#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||