These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence [CTTCTCTGAGCTTCCTCAAGCTTCTGAAAACAGCAAGAGATTAAATTATCGTAATTTTAAGCATCCAAGGTGTTTGGTGCCAGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAGAAAAAAAGCGTGCCAATTTGTTTTGTTGGT] [+] EMBL AK111296 [CTTCTCTGAGCTTCCTCAAGCTTCTGAAAACAGCAAGAGATTAAATTATCGTAATTTTAAGCATCCAAGGTGTTTGGTGCCAGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAGAAAAAAAGCGTGCCAATTTGTTTTGTTGGT] [-] EMBL CF312719 [ TCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCTGGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAAGGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTATGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTGTTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTGATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTAATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTTTTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAACAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAGAAAAA ] consensusID : consensus_4069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGCAAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATG] [+] EMBL CF312718 [AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGCAAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCTCGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCGACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAGACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAGAGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGAGGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4069#0 -------------------------CTTCTCTGAGCTTCC-TCAAGCTTCTGAAAACAGC 34 consensus_4069#1 AGCACCACCTCACCTCATTACCCGCGCTTTCCGCCCGGCAATTACACCAAGAAAAGGAGC 60 * ** * * * * * * *** *** consensus_4069#0 AAGAG---ATTAAATTATCGTAATTTTAAGCATCCAAGGTGTTT--GGTGCCA--GTGCT 87 consensus_4069#1 AAAAGGAAAAAAAAGTCTCTTTATCGGAGGCGTAACATCTACTTCTGCTGCTGCTGTGCT 120 ** ** * *** * ** * ** * ** * * * ** * *** ***** consensus_4069#0 CGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCG 147 consensus_4069#1 CGAGGACTGGAGATGGAGACCCAGGAGGCGAAGAGAGCAGATGTGGCGGCGGCGCCGGCG 180 ************************************************************ consensus_4069#0 ACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAG 207 consensus_4069#1 ACGGCGACCGGCGGTGAGGCCGTCAAACCGGCCGCCGGCGATGCTGGCGCAGTAACCAAG 240 ************************************************************ consensus_4069#0 ACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGTT-CGGTTGACAG 266 consensus_4069#1 ACGAATGGACCTTCAGCACCAGCAGGCAAAGCTGCAACTCCAACGGGNTTCGGTTGACAG 300 *********************************************** * ********** consensus_4069#0 AGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGA 326 consensus_4069#1 AGACGCCATACTCGCAAACGTGGAGCTGGAGAGGAAACTGTCAATGATCAAGGCGTGGGA 360 ************************************************************ consensus_4069#0 GGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTC 386 consensus_4069#1 GGAGAGCGAGAAGAGCAAAGCGGAGAACAAGGCTCAGAAGAAGATGTCATCCATACTCTC 420 ************************************************************ consensus_4069#0 ATGGGAGAACACGAGGAAGGCAGCTATAGAAGCAAAACTGCGAACACAAGAGGAGAAGCT 446 consensus_4069#1 ATG--------------------------------------------------------- 423 *** consensus_4069#0 GGAGAGGAAGAAGGCGGAGTACGCGGAGAAGATGAGGAACCAGGTAGCGGCGATCCACAA 506 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 GGCGGCGGAGGAGAAGAGGGCGACGGTGGAGGCGACGCGGCACGAGGAGATAATCAAGTA 566 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 TGAGGAGATGGCCGCCAAGCACAGGTCCAAGGGGACTACACCCACCAAATTCCTCTCTTG 626 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 TTTCGGCTCCTAGAACCACAAAAAACGCTCCTGCAGTGCAGTCTCCTGTCCTGTGTGCTG 686 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 ATGCTTCTGTGTGTTGATATGGTGATCAGTTTGCAGTTTTGGGCTTGTTTCTCTTCTTTA 746 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 ATCTTCTGTGTTGAAGTTCCGGATTTCATGGCTCTGTCATGCTGCTGCTGTGTTTTCCTT 806 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 TTCGCTGAAGATGTGATCATCATGTTTGGTGAGTGTAAGCATACTCAAAACACTTGTAAA 866 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 CAGTCAGTCACATGTAAACATACCACCTTTTTTGTGAATTTTGCGCTTCCAGAGATTAAG 926 consensus_4069#1 ------------------------------------------------------------ consensus_4069#0 AAAAAAAGCGTGCCAATTTGTTTTGTTGGT 956 consensus_4069#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||