cluster # 4071

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Oryza sativa
cluster # 4071 cluster # 4071 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4071#0 length = 769 sequences # 2

consensus_4071#1 length = 236 sequences # 1

consensusID : consensus_4071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence

                              [TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTC-CCTTTCAACCAATATGAATGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACCTACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCTCTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGCTAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAGCTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCATCTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAATGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTCATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGCCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGCACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTTGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG]

[+] EMBL CB666869             [TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTC CCTTTCAACCAATATGAATGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACCTACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCTCTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGCTAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAGCTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCATCTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAATGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTCATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGCCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGCACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTTGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCA            ]
[+] EMBL CB666827             [                         ATGTTCATCATATGGTCTACTTT AAAAAATATGAATGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTACCCTACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCTCTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGCTAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAGCTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCATCTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAATGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTCATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGCCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGCACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTTGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG]




>consensus_4071#0
TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTCCCTTTCAACCAATATGAA
TGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACC
TACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCT
CTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGC
TAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAG
CTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCAT
CTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTT
GTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAA
TGCAAATGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATTC
ATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTGC
CCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTGC
ACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACTT
GAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG

consensusID : consensus_4071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [TTTCGAAGCTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTTTCGCTCATCTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCCTGTCCAATGCAAAATGCTCCATCATCCTGTTAGGAGCATAAAGGGTATTGAACATG]

[-] EMBL CA756543             [TTTCGAAGCTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTTTCGCTCATCTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCCTGTCCAATGCAAAATGCTCCATCATCCTGTTAGGAGCATAAAGGGTATTGAACATG]




>consensus_4071#1
TTTCGAAGCTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTT
TCGCTCATCTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTG
AAGAAGTTGTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCC
TGTCCAATGCAAAATGCTCCATCATCCTGTTAGGAGCATAAAGGGTATTGAACATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4071#0      TCTTTTTTTTTTAATATAATATATAATGTTCATCATATGGTCCCTTTCAACCAATATGAA 60
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      TGATCAATTTGAGATCAATGCTTCCAGAAAAAATGCATATGGACAGTTCAATGACTAACC 120
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      TACAGAGTTAACTAGTTTACCAAAATTTTCTATGACAAGCATAAATCATGCTCTATTGCT 180
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      CTTCCCCATGTTCTTCTTTCGTTTCTTCAAGTAGTGCCAAAACAACCATGATTGTGTGGC 240
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      TAATTATGCAGAAAGTATCCCTTCCAAGCAGAAGTCATGGTTTAGGCCATTTTTTCGAAG 300
consensus_4071#1      ----------------------------------------------------TTTCGAAG 8
                                                                          ********

consensus_4071#0      CTACTTTGCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATTTCCTTTTCGCTCAT 360
consensus_4071#1      CTACTTGCCAAAAATAAACAAGAACACCTAAAAGAAAATGTCTATNTCCTTTTCGCTCAT 68
                      ******  ************************************* **************

consensus_4071#0      CTCATATACATGATCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTT 420
consensus_4071#1      CTCATATACATGCTCCCGTGCCTCAGACAGAGCAACCTGTCCAAATTTAGTGAAGAAGTT 128
                      ************ ***********************************************

consensus_4071#0      GTTTGCAAGATTTAATGATGTGACTGCAAGATCTTCATTAGCTTTAAGTGCTTGTGCCAA 480
consensus_4071#1      GTTTGCAAGATTTAATGATGTGACTGCAACCAGTTCATTAGCTTTAAGTGCCTGT-CCAA 187
                      *****************************    ****************** *** ****

consensus_4071#0      TGCAAA-TGCTCCATCATCTCTAATCTCATTAAAGCCCAGGTCAAGTGAAGTCAAAGATT 539
consensus_4071#1      TGCAAAATGCTCCATCATC-CTGTTAGGAGCATAAAGGGTATTGAACATG---------- 236
                      ****** ************ **  *   *  * *       *  *               

consensus_4071#0      CATTGATGATCTTGAAACTTCGAGCCAAGCAGATAGCACCATCATCTCCAAGTCCATTTG 599
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      CCCTCAAATCCAATGTAGATAATGTTGTGTTGTACTTCAAACAATCAGCAACAAATTCTG 659
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      CACCTGATACACCTATCTGGCACCAACCAAGTTTAAGGGTTTGGATTTTCCCATTGAACT 719
consensus_4071#1      ------------------------------------------------------------
                                                                                  

consensus_4071#0      TGAGAACATCACAAAGAGCCTTTACCCCCTCTGGCCCAATCGGATTATAG 769
consensus_4071#1      --------------------------------------------------