These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1646 fasta sequence [CCCCGCCGCCGCTGCCGCCGCGCCGATCTGATCCGCAGAAATGCCTCGTCACCACCACCACGACCCGCCTCCGCCTCCGCCCGCCTGCTGCTCCTGCTGCTGCGGCTGCGACGGCGGCTGCTACCCCGCGCCGACCAGCTACTACTACCCCGTGCCGCCCCCGCCCCCGCCCGCGCCAACCTCCGCCTCCGACCACCTCCTCCACGCCATCGCGGCCCATCTCCTCCTCGGCTCCGCGCCCCCGCCCCCGGCCCCGACTCCCCCGCAGCCGCAGACCCAGCCTCCGCCGCCGCCGCCGCCGCCGCCCACCTCCGCGGCGCACCACGCGTACCACTACCAGTACCAGTACCAGTACGAGCAGCCCAAACCCCATCAGTATCCGCAGCCGCAGCAGGCCAACCCGTCGGACCACAGCCACGCCGTGCTCCACTCGCTCCTGCGCCGCGTGGCCGCGCTCGAGTCCACCCTCCCGCGCTGCTTCGCCTCGCCGCCCGTGCCGCCCCCGCTCCACCGGAACCCTCGCCACCGCCCCCGCGCGGCCGCGCACCGGGAGGAGGAGGACGACGAGGAGGAGGAGGACGACGACGAGGATGCACCGGCCTCGCTGCCGCCGCCGCCACGCCGTGCGCGGGCTCCGCCTTCACCAGCGAGGGAGCGGGCGGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGGCGGTCCCGCACGCTGCGCCACCTCAAGGAGCTC-GCCGTCCTCCGGTCCAA-GGCCGCCGCGCTCCGGGGCTCCCTCTCCGGGCGAGGCAGGGTGGGCGACCCCGCCGCCATTTCTGAGGCCGCCATGGCCCTCCTCTTCCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAGCCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAG-TCAAAGAGCATGGGG-AGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATTTGCGGCTAATCCGTCAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTCTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCTTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGATAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCACTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAGATACCCTGCTTGATGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAATTCCCTGTGCTGCAG] [+] EMBL AK120770 [CCCCGCCGCCGCTGCCGCCGCGCCGATCTGATCCGCAGAAATGCCTCGTCACCACCACCACGACCCGCCTCCGCCTCCGCCCGCCTGCTGCTCCTGCTGCTGCGGCTGCGACGGCGGCTGCTACCCCGCGCCGACCAGCTACTACTACCCCGTGCCGCCCCCGCCCCCGCCCGCGCCAACCTCCGCCTCCGACCACCTCCTCCACGCCATCGCGGCCCATCTCCTCCTCGGCTCCGCGCCCCCGCCCCCGGCCCCGACTCCCCCGCAGCCGCAGACCCAGCCTCCGCCGCCGCCGCCGCCGCCGCCCACCTCCGCGGCGCACCACGCGTACCACTACCAGTACCAGTACCAGTACGAGCAGCCCAAACCCCATCAGTATCCGCAGCCGCAGCAGGCCAACCCGTCGGACCACAGCCACGCCGTGCTCCACTCGCTCCTGCGCCGCGTGGCCGCGCTCGAGTCCACCCTCCCGCGCTGCTTCGCCTCGCCGCCCGTGCCGCCCCCGCTCCACCGGAACCCTCGCCACCGCCCCCGCGCGGCCGCGCACCGGGAGGAGGAGGACGACGAGGAGGAGGAGGACGACGACGAGGATGCACCGGCCTCGCTGCCGCCGCCGCCACGCCGTGCGCGGGCTCCGCCTTCACCAGCGAGGGAGCGGGCGGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGGCGGTCCCGCACGCTGCGCCACCTCAAGGAGCTC GCCGTCCTCCGGTCCAA GGCCGCCGCGCTCCGGGGCTCCCTCTCCGGGCGAGGCAGGGTGGGCGACCCCGCCGCCATTTCTGAGGCCGCCATGGCCCTCCTCTTCCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAGCCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAG TCAAAGAGCATGGGG AGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATTTGCGGCTAATCCGTCAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTCTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCTTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGATAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCACTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAGATACCCTGCTTGATGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAATTCCCTGTGCTGCAG] [+] EMBL BU667071 [ GGAGGAGGAGGACGAGGAGGAGGAGGAGGAGGACGACGAGGATGCACCGGCCTCGCTG CGCCG CGCCACGCCGTGCGCGGGCTCCG CTTCACCAGCGAGGGAGCGGGCGGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGG GGTCCCGCACGCTGCGCCACCTCAAGGAGCTCTGCCGTCCTCCGGTCCAATGGCCGCCGCGCTCCGGGGCTCCCTCTCCGGGCGAGGCAGGGTGGGCGACCCCG CGCCATTTCTGAGGCCG CATGG CCTCCTCTTCCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAGCCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAGATCAAAGAGCATGGGGCAGATGGCAATGAATGGCGAATTGGATTGTAAAGAATACCATGAAGGTTG AATGCCG ATTTGCGG ] consensusID : consensus_4072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [TGGGGAGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATNTGCGGCTAATCCGTNAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTTTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCCTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGACAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCCCTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAAATACCCTGCTTGAAGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760854 [TGGGGAGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATNTGCGGCTAATCCGTNAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTTTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCCTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGACAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCCCTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAAATACCCTGCTTGAAGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4072#0 CCCCGCCGCCGCTGCCGCCGCGCCGATCTGATCCGCAGAAATGCCTCGTCACCACCACCA 60 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CGACCCGCCTCCGCCTCCGCCCGCCTGCTGCTCCTGCTGCTGCGGCTGCGACGGCGGCTG 120 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CTACCCCGCGCCGACCAGCTACTACTACCCCGTGCCGCCCCCGCCCCCGCCCGCGCCAAC 180 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CTCCGCCTCCGACCACCTCCTCCACGCCATCGCGGCCCATCTCCTCCTCGGCTCCGCGCC 240 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CCCGCCCCCGGCCCCGACTCCCCCGCAGCCGCAGACCCAGCCTCCGCCGCCGCCGCCGCC 300 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 GCCGCCCACCTCCGCGGCGCACCACGCGTACCACTACCAGTACCAGTACCAGTACGAGCA 360 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 GCCCAAACCCCATCAGTATCCGCAGCCGCAGCAGGCCAACCCGTCGGACCACAGCCACGC 420 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CGTGCTCCACTCGCTCCTGCGCCGCGTGGCCGCGCTCGAGTCCACCCTCCCGCGCTGCTT 480 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CGCCTCGCCGCCCGTGCCGCCCCCGCTCCACCGGAACCCTCGCCACCGCCCCCGCGCGGC 540 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CGCGCACCGGGAGGAGGAGGACGACGAGGAGGAGGAGGACGACGACGAGGATGCACCGGC 600 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CTCGCTGCCGCCGCCGCCACGCCGTGCGCGGGCTCCGCCTTCACCAGCGAGGGAGCGGGC 660 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 GGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGGCGGTCCCGCACGCTGCG 720 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CCACCTCAAGGAGCTCGCCGTCCTCCGGTCCAAGGCCGCCGCGCTCCGGGGCTCCCTCTC 780 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CGGGCGAGGCAGGGTGGGCGACCCCGCCGCCATTTCTGAGGCCGCCATGGCCCTCCTCTT 840 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAG 900 consensus_4072#1 ------------------------------------------------------------ consensus_4072#0 CCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAGTCAAAGAGCATGGGGA 960 consensus_4072#1 ------------------------------------------------------TGGGGA 6 ****** consensus_4072#0 GATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATT 1020 consensus_4072#1 GATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATN 66 *********************************************************** consensus_4072#0 TGCGGCTAATCCGTCAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGT 1080 consensus_4072#1 TGCGGCTAATCCGTNAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGT 126 ************** ********************************************* consensus_4072#0 CCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGA 1140 consensus_4072#1 CCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGA 186 ************************************************************ consensus_4072#0 GACCTCGAGCTCTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCA 1200 consensus_4072#1 GACCTCGAGCTTTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCA 246 *********** ************************************************ consensus_4072#0 TGCCAAGCCCGGGCTTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGA 1260 consensus_4072#1 TGCCAAGCCCGGGCCTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGA 306 ************** ********************************************* consensus_4072#0 GGAGAGGAGATAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTG 1320 consensus_4072#1 GGAGAGGAGACAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTG 366 ********** ************************************************* consensus_4072#0 GATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGA 1380 consensus_4072#1 GATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGA 426 ************************************************************ consensus_4072#0 GTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGC 1440 consensus_4072#1 GTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGC 486 ************************************************************ consensus_4072#0 CTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATAC 1500 consensus_4072#1 CTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATAC 546 ************************************************************ consensus_4072#0 AATTGCACTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAGA 1560 consensus_4072#1 AATTGCCCTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAAA 606 ****** *************************************************** * consensus_4072#0 TACCCTGCTTGATGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTG 1620 consensus_4072#1 TACCCTGCTTGAAGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTG 666 ************ *********************************************** consensus_4072#0 ATTAATCGAAATTCCCTGTGCTGCAG-- 1646 consensus_4072#1 ATTAATCGAAAAAAAAAAAAAAAAAAAA 694 *********** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||