|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence
[TCGAGGTCGAGGCTGCGTGGGTGTGCGACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTGGATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCTGCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGGAGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTTCGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCCGGTACTCCGCATGACGCCGCCGCCGCGGCGCCCCAGCCGGAACCGTCGTGCGACCTCGGCCTGTGGCTCAGCCCCGGCTCCCCGCCGGCGCCCGGGGACCGGCGATCCGGCGGCAGGCGGGCCGACACGCCGTCGATGAACTCCGAGGGATCCGTCACGACGTGCGGCGTCGTCGGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTTTGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATATGCTTTCTTTGCTGCATCCCGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTGTAAAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTTTTTCTCCCCCTACTTTGTTAGCATCAAAACGTCGAATAAAAGCGAACAGATTA]
[+] EMBL AK069813 [TCGAGGTCGAGGCTGCGTGGGTGTGCGACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTGGATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCTGCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGGAGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTTCGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCCGGTACTCCGCATGACGCCGCCGCCGCGGCGCCCCAGCCGGAACCGTCGTGCGACCTCGGCCTGTGGCTCAGCCCCGGCTCCCCGCCGGCGCCCGGGGACCGGCGATCCGGCGGCAGGCGGGCCGACACGCCGTCGATGAACTCCGAGGGATCCGTCACGACGTGCGGCGTCGTCGGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTTTGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATATGCTTTCTTTGCTGCATCCCGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTGTAAAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTTTTTCTCCCCCTACTTTGTTAGCATCAAAACGTCGAATAAAAGCGAACAGATTA]
[+] EMBL CA756495 [ GGTGTGCGACGTCGGGGATGAGCTGCAACGGCTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTGGATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCGCGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCAGTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCTGCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGGAGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTTCGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCNCGTACTCCGCATGACGCCGCCGCCGCGGCGCCCCAGCCGGGACCGTCGTGCGACCTCCGGCTGTGGCTCA ACCCGGCTCCCCGCCGGNGCCCGGGGACCGGCGATCCGGCGGCAGGGGGGCCGAC ]
consensusID : consensus_4081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CCCCTCGCTCTCCCTGCTCCGGTATAGCTAGTTGAGCTCTGATCGATCAGGTTGCATGAGACGGAGAAGCTGAGTGAGGCTAGGGTGGTTGGTTGTGATCATCACCATGAGCTGCAACGGTTGCCGGGTGCTGCGGAAGGGGTGCAGTGACGGCTGCGTGCTGCGGCCATGCCTGCAGTGGATCGACGCCGCCGACGCGCAGGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGACTCCTCTCCTTCATCTCCGCTGTCCCCGAGGCGCAGCGACCTGCGTTGTTCCAGTCGCTGCTGTACGAAGCAGCGGGGCGAACCATCAATCCGGTGCACGGCGCGGTGGGCCTCCTCTGGACGGGGAACTGGCCCCTCTGCCAGGCCGCTGTCGAGACCGTGCTGCGTGGAGGCGCCATCGGCCCTCTGCCGGAGCTCGGCGGGGCCTGCGGCGGCGCTGGCGGGGACCTCTACGGCGCCGCCAAGCGCAACGGCGGCTGGTCTACCTTCTCCACTGCGAAGCGGGTGAGGAAGGCCGAGGTACCTGAAGCCCCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCGGCTCTCCGCCGGCGGTGGGGGAGAGGAAA]
[+] EMBL AK071624 [CCCCTCGCTCTCCCTGCTCCGGTATAGCTAGTTGAGCTCTGATCGATCAGGTTGCATGAGACGGAGAAGCTGAGTGAGGCTAGGGTGGTTGGTTGTGATCATCACCATGAGCTGCAACGGTTGCCGGGTGCTGCGGAAGGGGTGCAGTGACGGCTGCGTGCTGCGGCCATGCCTGCAGTGGATCGACGCCGCCGACGCGCAGGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGACTCCTCTCCTTCATCTCCGCTGTCCCCGAGGCGCAGCGACCTGCGTTGTTCCAGTCGCTGCTGTACGAAGCAGCGGGGCGAACCATCAATCCGGTGCACGGCGCGGTGGGCCTCCTCTGGACGGGGAACTGGCCCCTCTGCCAGGCCGCTGTCGAGACCGTGCTGCGTGGAGGCGCCATCGGCCCTCTGCCGGAGCTCGGCGGGGCCTGCGGCGGCGCTGGCGGGGACCTCTACGGCGCCGCCAAGCGCAACGGCGGCTGGTCTACCTTCTCCACTGCGAAGCGGGTGAGGAAGGCCGAGGTACCTGAAGCCCCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCGGCTCTCCGCCGGCGGTGGGGGAGAGGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4081#0 ------------------------------------------------------------
consensus_4081#1 CCCCTCGCTCTCCCTGCTCCGGTATAGCTAGTTGAGCTCTGATCGATCAGGTTGCATGAG 60
consensus_4081#0 --------TCGAGGTCGAGGCTGCGTGGGTG--TGCGACGTCGGGGATGAGCTGCAACGG 50
consensus_4081#1 ACGGAGAAGCTGAGTGAGGCTAGGGTGGTTGGTTGTGATCATCACCATGAGCTGCAACGG 120
* ** * * **** ** ** ** **************
consensus_4081#0 CTGCCGCGTGCTGCGGAAGGGGTGCAGCGAGGGGTGCGTGTTGCGGCCGTGCCTGCAGTG 110
consensus_4081#1 TTGCCGGGTGCTGCGGAAGGGGTGCAGTGACGGCTGCGTGCTGCGGCCATGCCTGCAGTG 180
***** ******************** ** ** ****** ******* ***********
consensus_4081#0 GATCGACGGCGCCGAGGCGCAGGGCCACGCCACCGTGTTCGTCGCCAAGTTCTTTGGCCG 170
consensus_4081#1 GATCGACGCCGCCGACGCGCAGGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCG 240
******** ****** ******************** ***************** *****
consensus_4081#0 CGCCGGCCTCATGTCCTTCCTCACCGCCGTCCCCGAGCCGCAGCGCGCAGCGGTGTTCCA 230
consensus_4081#1 CGCCGGACTCCTCTCCTTCATCTCCGCTGTCCCCGAGGCGCAGCGACCTGCGTTGTTCCA 300
****** *** * ****** ** **** ********* ******* * *** *******
consensus_4081#0 GTCGCTGCTGTACGAGGCGGCGGGGAGGACGATCAACCCGGTGGGCGGCGCGGTCGGGCT 290
consensus_4081#1 GTCGCTGCTGTACGAAGCAGCGGGGCGAACCATCAATCCGGTGCACGGCGCGGTGGGCCT 360
*************** ** ****** * ** ***** ****** ********* ** **
consensus_4081#0 GCTCTCCGGCGGGAGCTGGCACCTCTGCCAGGCGGCGGTCGACACCGTGCTGCGCGGCGG 350
consensus_4081#1 CCTCTGGACGGGGAACTGGCCCCTCTGCCAGGCCGCTGTCGAGACCGTGCTGCGTGGAGG 420
**** **** ***** ************ ** ***** *********** ** **
consensus_4081#0 AGGCATCCAACCGCTGCCGGACCAGGTCGACGCCGCCGCCGCCGGTGGCCGCGACGTGTT 410
consensus_4081#1 CGCCATCGGCCCTCTGCCGGAGCTCGGCGGGGCCTGCGGCGGCGCTGGCGGGGACCTCTA 480
* **** ** ******** * * ** *** ** ** ** **** * *** * *
consensus_4081#0 CGCCTCCACGGCGAGGCGCGCCATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTC 470
consensus_4081#1 CGGCGCC---GCCAAGCGCAAC---GGCGGCTGGTCTACCTTCTCCACTGCGAAGCGGGT 534
** * ** ** * **** * ***** ** ** ** ***** ** *********
consensus_4081#0 GACGACGACGACGACGACCAAGAACCCCGGTACTCCGCATGACGCCGCCGCCGCGGCGCC 530
consensus_4081#1 GAGGAAGGC-----CGA-----------GGTACC-----TGAAGCC-------------- 559
** ** * * *** ***** *** ***
consensus_4081#0 CCAGCCGGAACCGTCGTGCGACCTCGGCCTGTGGCTCAGCCCCGGCTCCCCGCCGGCGCC 590
consensus_4081#1 ----------CCGTCGTGCGACCTAGGCCTGTGCCTCAGCCCCGGCTCTCCGCCGGCGGT 609
************** ******** ************** *********
consensus_4081#0 CGGGGACCGGCGATCCGGCGGCAGGCGGGCCGACACGCCGTCGATGAACTCCGAGGGATC 650
consensus_4081#1 GGGGGAGAGGAAA----------------------------------------------- 622
***** ** *
consensus_4081#0 CGTCACGACGTGCGGCGTCGTCGGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTT 710
consensus_4081#1 ------------------------------------------------------------
consensus_4081#0 TGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATATGCTTTCTTTGCTGCATCC 770
consensus_4081#1 ------------------------------------------------------------
consensus_4081#0 CGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTG 830
consensus_4081#1 ------------------------------------------------------------
consensus_4081#0 TAAAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTT 890
consensus_4081#1 ------------------------------------------------------------
consensus_4081#0 TTTCTCCCCCTACTTTGTTAGCATCAAAACGTCGAATAAAAGCGAACAGATTA 943
consensus_4081#1 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||