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Oryza sativa
cluster # 4085 cluster # 4085       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4085#0 length = 2166 sequences # 3  

consensusID : consensus_4085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2166
fasta sequence
                              [CTTTTCTCCCTCCCTCTCTCTTTTCCTTCTCTGTTTTTCCTTCTTCCGCTGCAGCTGCCGCCGGCGAGGGCGGGGGCGGCCAGCATCCTCGTGGCACAGCCGGAACCCTAGCCGCCGGCCGCCGGCGCCGCCACCTCCCCGAAAATCCGTCGCCATCGATCATCCTCTCGCACAATCGAAGATTGGTGGTTGGGCATGGATCTGATTCTTCCATTTAAAAAGGGCGATTTCGCGGAGTCAAAGTCCTTCATCGATGGTTACAAATGTGCTTGGTTTCGCTGTAAGGTGAGGCAGCTGTGAAGTTATCTTATTATTTTTCTCAGGAGTTCATTGCACATTGTGGCATATGACACCTATATTAACATGTCATGTGAAACACCTTTGTATCGCCTGCTTGTCGCTTGATACAGTGTTGGATGGCATATGCTTTATGGTTAGCATGGAACCACCTAGAATTTCAGTCCCAAACAGAACTCTAATGTAAAAATTGATGGAGTTTGTGTCTTTATCCAGTCATGTTGGCTATTCTACTAGAAAACAGAGATGACTTATAACAGCCAGGCCACTTGCCACTGGAGGAGTTGACTGAGCCCCTTGTGAGTGACTTTTAATCAAAACAAAATCGTTTTGTTTCCTTACCAGCATTGCTGACTACTGGCCAATATGATGCTTGCCTGGAGTTTGTGCGTGCACGCATTATGTCAACATGCCAGATTGATGTGATCAGTGGAGGCATGGTGCTATGAGTATATATATTGGCTACATATGGTGTTTTCTGCCTATGTAAGACTAATTGGTGCAATGTCCAATTTACTCACATTTAGTGCAGTATCTGTGGTTTGATCTTAGTAATACAGGGACCAAATTGGTTGTATGGTCGTTCACTTTGCACAAATTGGTGTACTAGATAAGTTCGATAGATGGCAGTCCATTTTCCATAATAGAGCATATTGCTGAGCTAAAAACAAGTCATCTTATTTCTTTTCAGATTAATGATATGCGTGTCACAGAAACAGGGTCCTTTCAGTATTTACTGGAGTATCTTGATTACCCAGACGAAGAGAAAACATGGACTGAAGTCTTTGAAAAGAACCCAGCGTATGGCAAAAGGAACTCAAATGTGGTTAGAGAAAGAGAATGCATGCTTCGTCCTTCCTATCCTGAGTTGTATTGGGGGGATCAAGTTCCCGAGCAATTTCCAAAGAGTAATGTGATAGTATCTGTTTGTGATACCCCGAAAGTAGGTGATCTGGTTGAGTGGTTGTCTGAAGGTTCTTACTGGACTGCGAAAGTTACTAAGTTACTTAGTGAAGATATGGTTAAGGTACAGCTGTTGAAACCTCCTATAGGTGAAGGGGGGAGTTATACTGCTTACTGCAAGGACATCAGGCCTGCTCTTGATTGGTGCCTGGAGAAAGGTTGGACTGTACCTCTTTCACAGGCAAATGGACGGTGCTGGCATGCTGCTCGTCTGATTCATCATAAATCTGACACAGAGATGAGTGGTTCAGATGAAGAGTCGACATCTGATGACGATGAAGAGGAAGCGCAGAAATCCTTGAAAAGAGCATCAAATTCGTCTCAAGAAGCTCCAGGCTCAAACCTGGAAATTACATCAGATACAACCTCCAGTTCTAGGATTAACAGTCAGACAGCTACCATTGCCACAACCAAGGGGATTTCGAGATCCAGCCCGG-TATCCATTTCCACTGGGCCATAGTCATGGTGCACAAGCAGCTGTGACTTGTACAGTTAACCAGGTACCCGCAGTTCCAGCAGACAATTAGGGATATAGGTGATAGACATGTCCAATAGCACAAATGTTTCAGAGCTGGATAGGATCTCAAACAGTACTATAGCCGCTGAGTCTCTTCCAAAGATCTGAACTGGCTACCCCCTCAACCATTTGTGGAGAAGGATCCATCACGAGACACAACACTATATAAATATAAGAAATATAATGATGTTGGAGTCTTGGAGATACATCAGCATTCAGCCAGTACTTCATCCCATGAAATGGATATATGCTTTACACGTTGTTGTTTTCATGACTGAAGTGCTACGTTGGCAGGCTGCAATGTTTGCAGCGTTGCCGCTACTTTTAGGGACAGTTCATTTGACTGATCAATGAGATTTATACAGCTCTGAAATTTCAGACAAAAAAAA]

[+] EMBL AK110979             [CTTTTCTCCCTCCCTCTCTCTTTTCCTTCTCTGTTTTTCCTTCTTCCGCTGCAGCTGCCGCCGGCGAGGGCGGGGGCGGCCAGCATCCTCGTGGCACAGCCGGAACCCTAGCCGCCGGCCGCCGGCGCCGCCACCTCCCCGAAAATCCGTCGCCATCGATCATCCTCTCGCACAATCGAAGATTGGTGGTTGGGCATGGATCTGATTCTTCCATTTAAAAAGGGCGATTTCGCGGAGTCAAAGTCCTTCATCGATGGTTACAAATGTGCTTGGTTTCGCTGTAAGGTGAGGCAGCTGTGAAGTTATCTTATTATTTTTCTCAGGAGTTCATTGCACATTGTGGCATATGACACCTATATTAACATGTCATGTGAAACACCTTTGTATCGCCTGCTTGTCGCTTGATACAGTGTTGGATGGCATATGCTTTATGGTTAGCATGGAACCACCTAGAATTTCAGTCCCAAACAGAACTCTAATGTAAAAATTGATGGAGTTTGTGTCTTTATCCAGTCATGTTGGCTATTCTACTAGAAAACAGAGATGACTTATAACAGCCAGGCCACTTGCCACTGGAGGAGTTGACTGAGCCCCTTGTGAGTGACTTTTAATCAAAACAAAATCGTTTTGTTTCCTTACCAGCATTGCTGACTACTGGCCAATATGATGCTTGCCTGGAGTTTGTGCGTGCACGCATTATGTCAACATGCCAGATTGATGTGATCAGTGGAGGCATGGTGCTATGAGTATATATATTGGCTACATATGGTGTTTTCTGCCTATGTAAGACTAATTGGTGCAATGTCCAATTTACTCACATTTAGTGCAGTATCTGTGGTTTGATCTTAGTAATACAGGGACCAAATTGGTTGTATGGTCGTTCACTTTGCACAAATTGGTGTACTAGATAAGTTCGATAGATGGCAGTCCATTTTCCATAATAGAGCATATTGCTGAGCTAAAAACAAGTCATCTTATTTCTTTTCAGATTAATGATATGCGTGTCACAGAAACAGGGTCCTTTCAGTATTTACTGGAGTATCTTGATTACCCAGACGAAGAGAAAACATGGACTGAAGTCTTTGAAAAGAACCCAGCGTATGGCAAAAGGAACTCAAATGTGGTTAGAGAAAGAGAATGCATGCTTCGTCCTTCCTATCCTGAGTTGTATTGGGGGGATCAAGTTCCCGAGCAATTTCCAAAGAGTAATGTGATAGTATCTGTTTGTGATACCCCGAAAGTAGGTGATCTGGTTGAGTGGTTGTCTGAAGGTTCTTACTGGACTGCGAAAGTTACTAAGTTACTTAGTGAAGATATGGTTAAGGTACAGCTGTTGAAACCTCCTATAGGTGAAGGGGGGAGTTATACTGCTTACTGCAAGGACATCAGGCCTGCTCTTGATTGGTGCCTGGAGAAAGGTTGGACTGTACCTCTTTCACAGGCAAATGGACGGTGCTGGCATGCTGCTCGTCTGATTCATCATAAATCTGACACAGAGATGAGTGGTTCAGATGAAGAGTCGACATCTGATGACGATGAAGAGGAAGCGCAGAAATCCTTGAAAAGAGCATCAAATTCGTCTCAAGAAGCTCCAGGCTCAAACCTGGAAATTACATCAGATACAACCTCCAGTTCTAGGATTAACAGTCAGACAGCTACCATTGCCACAACCAAGGGGATTTCGAGATCCAGCCCGG TATCCATTTCCACTGGGCCATAGTCATGGTGCACAAGCAGCTGTGACTTGTACAGTTAACCAGGTACCCGCAGTTCCAGCAGACAATTAGGGATATAGGTGATAGACATGTCCAATAGCACAAATGTTTCAGAGCTGGATAGGATCTCAAACAGTACTATAGCCGCTGAGTCTCTTCCAAAGATCTGAACTGGCTACCCCCTCAACCATTTGTGGAGAAGGATCCATCACGAGACACAACACTATATAAATATAAGAAATATAATGATGTTGGAGTCTTGGAGATACATCAGCATTCAGCCAGTACTTCATCCCATGAAATGGATATATGCTTTACACGTTGTTGTTTTCATGACTGAAGTGCTACGTTGGCAGGCTGCAATGTTTGCAGCGTTGCCGCTACTTTTAGGGACAGTTCATTTGACTGATCAATGAGATTTATACAGCT                      ]
[+] EMBL AU031136             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gagnGGGAGTTATACTGCTTACTGCAAGGACATCAGGCCTGCTCTTGATTGGTGCCTGGAGAAAGGTTGGACTGTACNNNTTTCACAGGCAAATGGACGGTGCTGGCATGCTGCTCGTCTGATTCATCATAAATCTGACACAGAGATGAGTGGTTCAGATGAAGAGTCGACATCTGATGACGATGAAGAGGAAGCGCAGAAATCCTTGAAAAGAGCATCAAATTCGTCTCAAGAAGCTCCAGGCTCAAACCTGGAAATTACATCAGATACAACCTCCAGTTCTAGGATTAACAGTCAGACAGCTACCATTGC  CAACCAAGGGGATTTCGAGATCCAGCCCGGTTATCCATTTCCACTGGGCCATAGTCATGGTGCACAAGCAGCTGTGACTTGTACAGTTAACCAGGTACCCGCAGTTCCAGCAGACAATTAGGGATATAGGTGATAGACATG                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU101527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCATAGTCATGGTGCACAAGCAGCTGTGACTTGTACAGTTAACCAGGTACCCGCAGTTCCAGCAGACAATTAGGGATATAGGTGATAGACATGTCCAATAGCACAAATGTTTCAGAGCTGGATAGGATCTCAAACAGTACTATAGCCGCTGAGTCTCTTCCAAAGATCTGAACTGGCTACCCCCTCAACCATTTGTGGAGAAGGATCCATCACGAGACACAACACTATATAAATATAAGAAATATAATGATGTTGGAGTCTTGGAGATACATCAGCATTCAGCCAGTACTTCATCCCATGAAATGGATATATGCTTTACACGTTGTTGTTTTCATGACTGAAGTGCTACGTTGGCAGGCTGCAATGTTTGCA CGTTGCCGCTACTTTTAGGGACAGTTCATTTGACTGATCAATGAGATTTATACAGCTCTGAAATTTCAGACAAAAAAAA]


>consensus_4085#0 CTTTTCTCCCTCCCTCTCTCTTTTCCTTCTCTGTTTTTCCTTCTTCCGCTGCAGCTGCCG CCGGCGAGGGCGGGGGCGGCCAGCATCCTCGTGGCACAGCCGGAACCCTAGCCGCCGGCC GCCGGCGCCGCCACCTCCCCGAAAATCCGTCGCCATCGATCATCCTCTCGCACAATCGAA GATTGGTGGTTGGGCATGGATCTGATTCTTCCATTTAAAAAGGGCGATTTCGCGGAGTCA AAGTCCTTCATCGATGGTTACAAATGTGCTTGGTTTCGCTGTAAGGTGAGGCAGCTGTGA AGTTATCTTATTATTTTTCTCAGGAGTTCATTGCACATTGTGGCATATGACACCTATATT AACATGTCATGTGAAACACCTTTGTATCGCCTGCTTGTCGCTTGATACAGTGTTGGATGG CATATGCTTTATGGTTAGCATGGAACCACCTAGAATTTCAGTCCCAAACAGAACTCTAAT GTAAAAATTGATGGAGTTTGTGTCTTTATCCAGTCATGTTGGCTATTCTACTAGAAAACA GAGATGACTTATAACAGCCAGGCCACTTGCCACTGGAGGAGTTGACTGAGCCCCTTGTGA GTGACTTTTAATCAAAACAAAATCGTTTTGTTTCCTTACCAGCATTGCTGACTACTGGCC AATATGATGCTTGCCTGGAGTTTGTGCGTGCACGCATTATGTCAACATGCCAGATTGATG TGATCAGTGGAGGCATGGTGCTATGAGTATATATATTGGCTACATATGGTGTTTTCTGCC TATGTAAGACTAATTGGTGCAATGTCCAATTTACTCACATTTAGTGCAGTATCTGTGGTT TGATCTTAGTAATACAGGGACCAAATTGGTTGTATGGTCGTTCACTTTGCACAAATTGGT GTACTAGATAAGTTCGATAGATGGCAGTCCATTTTCCATAATAGAGCATATTGCTGAGCT AAAAACAAGTCATCTTATTTCTTTTCAGATTAATGATATGCGTGTCACAGAAACAGGGTC CTTTCAGTATTTACTGGAGTATCTTGATTACCCAGACGAAGAGAAAACATGGACTGAAGT CTTTGAAAAGAACCCAGCGTATGGCAAAAGGAACTCAAATGTGGTTAGAGAAAGAGAATG CATGCTTCGTCCTTCCTATCCTGAGTTGTATTGGGGGGATCAAGTTCCCGAGCAATTTCC AAAGAGTAATGTGATAGTATCTGTTTGTGATACCCCGAAAGTAGGTGATCTGGTTGAGTG GTTGTCTGAAGGTTCTTACTGGACTGCGAAAGTTACTAAGTTACTTAGTGAAGATATGGT TAAGGTACAGCTGTTGAAACCTCCTATAGGTGAAGGGGGGAGTTATACTGCTTACTGCAA GGACATCAGGCCTGCTCTTGATTGGTGCCTGGAGAAAGGTTGGACTGTACCTCTTTCACA GGCAAATGGACGGTGCTGGCATGCTGCTCGTCTGATTCATCATAAATCTGACACAGAGAT GAGTGGTTCAGATGAAGAGTCGACATCTGATGACGATGAAGAGGAAGCGCAGAAATCCTT GAAAAGAGCATCAAATTCGTCTCAAGAAGCTCCAGGCTCAAACCTGGAAATTACATCAGA TACAACCTCCAGTTCTAGGATTAACAGTCAGACAGCTACCATTGCCACAACCAAGGGGAT TTCGAGATCCAGCCCGGTATCCATTTCCACTGGGCCATAGTCATGGTGCACAAGCAGCTG TGACTTGTACAGTTAACCAGGTACCCGCAGTTCCAGCAGACAATTAGGGATATAGGTGAT AGACATGTCCAATAGCACAAATGTTTCAGAGCTGGATAGGATCTCAAACAGTACTATAGC CGCTGAGTCTCTTCCAAAGATCTGAACTGGCTACCCCCTCAACCATTTGTGGAGAAGGAT CCATCACGAGACACAACACTATATAAATATAAGAAATATAATGATGTTGGAGTCTTGGAG ATACATCAGCATTCAGCCAGTACTTCATCCCATGAAATGGATATATGCTTTACACGTTGT TGTTTTCATGACTGAAGTGCTACGTTGGCAGGCTGCAATGTTTGCAGCGTTGCCGCTACT TTTAGGGACAGTTCATTTGACTGATCAATGAGATTTATACAGCTCTGAAATTTCAGACAA AAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)