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Oryza sativa
cluster # 4097 cluster # 4097       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4097#0 length = 2652 sequences # 3  

consensusID : consensus_4097#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2652
fasta sequence
                              [CCCCAACCCCTCTGAATTTCCCTCCCTTTCCCTCTCCTCCCCTCCTCCTCCTCCCGCCTCCGCCGCCGCCGCCGCCGACTACGCCATGGCCGCCACCGCGACGAAGACCATCGACTTCGCCGCGGAGAGAGCGCTCGCCAAGGACTTCCTCGCCAACTTCGCCGGCCCGCGCGGCGAGCCCAAGTACCTCAACATCCTCCAAGATGTCGCGAACCGGAAGATCCGCGCGGTCCAGATCGAGCTGGACGACCTGTTCCACTACAAGGATGCGGATGACGAGTTCTTGCAGAGGGTCACGGAGAACACGAAGCGCTACATCGGCATATTCGCGGACGCCATCGACGAGCTCATGCCGGAGTCCACCGAGGCGTACGCCGTCGACGAGGACAGGGACATCTTGATGACGCAGCGCGTCGACGAGGGAGCCGATGGCGGCGCAGACGGCACTGACCCCCTGCAGAGGATGCCGCCGGAGATCAGGCGGTTCTTTGAGGTGTACATCAAGGCTTTCTCAAAGGTGACTCCACTCACCATTAGGCAAGTGAAGGCATCCAACATCGGGCAGCTTGTCAAAATATCTGGAATCGTGACTCGCTGCTCGGATGTGAAGCCCTTGATGCAAGTTGCTGTTTATACATGTGAAGAATGTGGTTTTGAGATATACCAGGAAGTGACTGCTAGAGTATTTATGCCTCTCTTTGAATGCCCATCTCAAAGGTGCAAGCTGAACAAAGCCAAAGGGAATCTAATCCTTCAACTGCGAGCATCAAAATTTCTGAAATTTCAAGAGGTGAAACTCCAAGAGTTAGCAGAACATGTACCAAAGGGTCACATCCCACGTTCTCTGACTGTTCATCTTAGAGGAGAGCTGACTAGAAAGGTTGCACCTGGAGATGTGGTTGAGATGTCAGGCATTTTCCTCCCCATGCCTTACTATGGATTCCGAGCCATGCGTGCAGGATTGGTTGCTGATACCTACTTGGAATCAATGTCTATCACCCATTTCAAGAAAAAATATGAAGAATATGAACTTAAAGGTGATGAACAAGAACAAATTGACCGTTTGGCTGAGGATGGTGATATCTACAATAAGTTGGCAAGGTCTTTGGCACCTGAAATATTTGGACATGAAGATGTCAAGAAAGCACTGCTGTTGCTACTTGTTGGCGCACCTCATCGGAAGCTTACAGATGGCATGAAGATAAGAGGAGACTTGCACATATGCCTGATGGGAGATCCTGGTGTTGCAAAGAGTCAACTTCTGAAGCATATCATCAATGTTGCTCCAAGAGGAGTGTATACCACAGGGCGTGGAAGCAGTGGTGTTGGTCTTACTGCTGCCGTCCAGAAAGATCCAGTTACAAATGAGTTTGTTCTTGAGGGAGGAGCACTGGTACTGGCAGATATGGGTATTTGTGCAATAGATGAGTTTGACAAGATGGAAGAGTCAGACAGGACAGCAATCCATGAGGTGATGGAGCAGCAGACTGTTAGTATTGCGAAGGCTGGAATCACCACCTCCCTCAATGCAAGAACGGCAGTTTTGGCTGCTGCAAATCCAGCATGGGGAAGGTATGATATGAGGAGGACCCCAGCTGAAAACATCAATCTACCTCCAGCACTTCTGTCTCGTTTTGACCTCCTTTGGTTGATCCTGGATCGCGCGGACATGGAAACCGATCTTGAAATGGCAAGACATGTTGTTCATGTACATCAAAACCTTGAATCACCAGCTCTGGGGTTCACACCACTTGAACCACCAGTTCTTAGGGCATACATATCTACTGCGAGAAGAGTTGTTCCTTCTGTTCCTCGAGAGCTTGAGGAATACATTGCAACTGCCTATTCGAGCATCCGCCAAGAGGAAGCAAAATCAAATGCACCACACTCCTACACAACTATCAGGACACTTTTGAGCATACTCCGGATTTCTATTGCCTTGGCAAGGCTTAGATTCTCAGAAACCGTCGCTCAGAGCGATGTCGATGAAGCGCTTCGGCTGATGCAGATGTCAAAGTACTCCCTATACTCAGATGACCGCCAGCGGTCTGGATTGGACGCGATTTCTGACATATATTCCATTCTGAGAGATGAAGCTGCAAGAACTAACAGCATGGATGTCAGATATGCTCATGCCCTTAACTTGATCTCCAGAAAGGGTTACAGCGAGGCTCAACTGAAGGAATGCTTGGAGGAGTATGCTTCCCTGAATGTTTGGCAGATCCACCCCAACACCTTTGATATCCATTTCATCGACGCGTAATGCAGGAAGAATTGATCGATCGATCTCCTCTCCTTCAAAGTTCTAACATACCCATGATGAGCTCATGATGGAAAATCTAGAGTTTGAAGCTCCAGGAAGTTGTGACCATGGCTAGGGAAGCCATTGATCAAGGTCTAACAAGGCTGTAAAAGTACTAGGGATCTTAGATAAACTATAATTTTCAATGATGTTATTCTGGGTAGATGTAGCCTGTGAGAAATGTATTAGTAGAGGGAGCCATTGCTATCATTGTCCACCTTGTGAGAAGCATTG-TGGTTTTTTCAGCCATATTCTTGACTCTTGTTCAACACTTGATACTGAAGTGTATGTATCATGGTGTGTTTAGTTGCTGGCA-TTTATGTTCTCAGACAGCAGCGATTAAAAAAAAC]

[+] EMBL AK073411             [CCCCAACCCCTCTGAATTTCCCTCCCTTTCCCTCTCCTCCCCTCCTCCTCCTCCCGCCTCCGCCGCCGCCGCCGCCGACTACGCCATGGCCGCCACCGCGACGAAGACCATCGACTTCGCCGCGGAGAGAGCGCTCGCCAAGGACTTCCTCGCCAACTTCGCCGGCCCGCGCGGCGAGCCCAAGTACCTCAACATCCTCCAAGATGTCGCGAACCGGAAGATCCGCGCGGTCCAGATCGAGCTGGACGACCTGTTCCACTACAAGGATGCGGATGACGAGTTCTTGCAGAGGGTCACGGAGAACACGAAGCGCTACATCGGCATATTCGCGGACGCCATCGACGAGCTCATGCCGGAGTCCACCGAGGCGTACGCCGTCGACGAGGACAGGGACATCTTGATGACGCAGCGCGTCGACGAGGGAGCCGATGGCGGCGCAGACGGCACTGACCCCCTGCAGAGGATGCCGCCGGAGATCAGGCGGTTCTTTGAGGTGTACATCAAGGCTTTCTCAAAGGTGACTCCACTCACCATTAGGCAAGTGAAGGCATCCAACATCGGGCAGCTTGTCAAAATATCTGGAATCGTGACTCGCTGCTCGGATGTGAAGCCCTTGATGCAAGTTGCTGTTTATACATGTGAAGAATGTGGTTTTGAGATATACCAGGAAGTGACTGCTAGAGTATTTATGCCTCTCTTTGAATGCCCATCTCAAAGGTGCAAGCTGAACAAAGCCAAAGGGAATCTAATCCTTCAACTGCGAGCATCAAAATTTCTGAAATTTCAAGAGGTGAAACTCCAAGAGTTAGCAGAACATGTACCAAAGGGTCACATCCCACGTTCTCTGACTGTTCATCTTAGAGGAGAGCTGACTAGAAAGGTTGCACCTGGAGATGTGGTTGAGATGTCAGGCATTTTCCTCCCCATGCCTTACTATGGATTCCGAGCCATGCGTGCAGGATTGGTTGCTGATACCTACTTGGAATCAATGTCTATCACCCATTTCAAGAAAAAATATGAAGAATATGAACTTAAAGGTGATGAACAAGAACAAATTGACCGTTTGGCTGAGGATGGTGATATCTACAATAAGTTGGCAAGGTCTTTGGCACCTGAAATATTTGGACATGAAGATGTCAAGAAAGCACTGCTGTTGCTACTTGTTGGCGCACCTCATCGGAAGCTTACAGATGGCATGAAGATAAGAGGAGACTTGCACATATGCCTGATGGGAGATCCTGGTGTTGCAAAGAGTCAACTTCTGAAGCATATCATCAATGTTGCTCCAAGAGGAGTGTATACCACAGGGCGTGGAAGCAGTGGTGTTGGTCTTACTGCTGCCGTCCAGAAAGATCCAGTTACAAATGAGTTTGTTCTTGAGGGAGGAGCACTGGTACTGGCAGATATGGGTATTTGTGCAATAGATGAGTTTGACAAGATGGAAGAGTCAGACAGGACAGCAATCCATGAGGTGATGGAGCAGCAGACTGTTAGTATTGCGAAGGCTGGAATCACCACCTCCCTCAATGCAAGAACGGCAGTTTTGGCTGCTGCAAATCCAGCATGGGGAAGGTATGATATGAGGAGGACCCCAGCTGAAAACATCAATCTACCTCCAGCACTTCTGTCTCGTTTTGACCTCCTTTGGTTGATCCTGGATCGCGCGGACATGGAAACCGATCTTGAAATGGCAAGACATGTTGTTCATGTACATCAAAACCTTGAATCACCAGCTCTGGGGTTCACACCACTTGAACCACCAGTTCTTAGGGCATACATATCTACTGCGAGAAGAGTTGTTCCTTCTGTTCCTCGAGAGCTTGAGGAATACATTGCAACTGCCTATTCGAGCATCCGCCAAGAGGAAGCAAAATCAAATGCACCACACTCCTACACAACTATCAGGACACTTTTGAGCATACTCCGGATTTCTATTGCCTTGGCAAGGCTTAGATTCTCAGAAACCGTCGCTCAGAGCGATGTCGATGAAGCGCTTCGGCTGATGCAGATGTCAAAGTACTCCCTATACTCAGATGACCGCCAGCGGTCTGGATTGGACGCGATTTCTGACATATATTCCATTCTGAGAGATGAAGCTGCAAGAACTAACAGCATGGATGTCAGATATGCTCATGCCCTTAACTTGATCTCCAGAAAGGGTTACAGCGAGGCTCAACTGAAGGAATGCTTGGAGGAGTATGCTTCCCTGAATGTTTGGCAGATCCACCCCAACACCTTTGATATCCATTTCATCGACGCGTAATGCAGGAAGAATTGATCGATCGATCTCCTCTCCTTCAAAGTTCTAACATACCCATGATGAGCTCATGATGGAAAATCTAGAGTTTGAAGCTCCAGGAAGTTGTGACCATGGCTAGGGAAGCCATTGATCAAGGTCTAACAAGGCTGTAAAAGTACTAGGGATCTTAGATAAACTATAATTTTCAATGATGTTATTCTGGGTAGATGTAGCCTGTGAGAAATGTATTAGTAGAGGGAGCCATTGCTATCATTGTCCACCTTGTGAGAAGCATTG TGGTTTTTTCAGCCATATTCTTGACTCTTGTTCAACACTTGATACTGAAGTGTATGTATCATGTTGTGTTTAGTTGCTGGCA TTTATGTTCTCAGACAGCAGCGATTAAAAAAAAC]
[+] EMBL CA766626             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ggGGAAGCAAAAT NAATGCACCACACTCCTACACAACTATCNGGACACTTTTGAGCATACTCCGGATTTCTATTGCCTTGGCAAGGCTTAGATTCTCAGAAACCGTCGCTCAGAGCGATGTCGATGAAGCGCTTCGGCTGATGCAGATGTCAAAGTACTCCCTATACTCAGATGACCGCCAGCGGTCTGGATTGGACGCGATTTCTGTCATATATTCCATTCTGAGAGATGAAGCTGCAAGAACTAACAGCATGGATGTCAGATATGCTCATGCCCTTAACTTGATCTCCAGAAAGGGTTACAGCGAGGCTCAACTGAAGGAATGCTTGGAGGAGTATGCTTCCCTGAATGTTTGGCAGATCCACCCCAACACCTTTGATATCCATTTCATCGACGCGTAATGCAGGAAGAATTGATCGATCGATCTCCTCTCCTTCAAAGTTCTAACATACCCATGATGAGCTCATGATGGAAAATCTAGAGTTTGAAGCTCCAGGAAGTTGTGACCATGGCTAGGGAAGCCATTGATCAAGGTCTAACAAGGCTGTAAAAGTACTAGGGATCTTAGATAAACTATAATTTTCAATGATGNTATTCTGGGTAGATGTAGCCTGTGAGAAATGTATTAGTAGAGGGAGCCATTGCTATCATTGTCCACCTTGGGAGAAGCATTGNGGGTTTTTTCAGCCATATTCTTGACTCTTGGTCAACACTTGATACTGNAGGGNATGNATCATGGTGGGGTTAGTTGCTGGCANTTTATGGTCTCAaa                    ]
[-] EMBL CA763157             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTATTGCCTTGGCAAGGCTTAGATTCTCAGAAACCGTCGCTCAGAGCGATGTCGATGAAGCGCTTCGGCTGATGCAGATGTCAAAGTACTCCCTATACTCAGATGACCGCCAGCGGTCTGGATTGGACGCGATTTCTGACATATATTCCATTCTGAGAGATGAAGCTGCAAGAACTAACAGCATGGATGTNAGATATGCTCATGCCCTTAACTTGATCTCCAGAAAGGGTTACAGCGAGGCTCAACTGAAGGAATGCTTGGAGGAGTATGCTTCCCTGAATGTTTGGCAGATCCACCCCAACACCTTTGATATCCATTTCATCGACGCGTAATGCAGGAAGAATTGATCGATCGATCTCCTCTCCTTCAAAGTTCTAACATACCCATGATGAGCTCATGATGGAAAATCTAGAGTTTGAAGCTCCAGGAAGTTGTGACCATGGCTAGGGAAGCCATTGATCAAGGTCTAACAAGGCTGTAAAAGTACTAGGGATCTTAGATAAACTATAATTTTCAATGATGTTATTCTGGGTAGATGTAGCCTGTGAGAAATGTATTAGTAGAGGGAGCCATTGCTATCATTGTCCACCTTGTGAGAAGCATTG TGGTTTTTTCAGCCATATTCTTGACTCTTGTTCAACACTTGATACTGAAGTGTATGTATCAaaaa                                                    ]


>consensus_4097#0 CCCCAACCCCTCTGAATTTCCCTCCCTTTCCCTCTCCTCCCCTCCTCCTCCTCCCGCCTC CGCCGCCGCCGCCGCCGACTACGCCATGGCCGCCACCGCGACGAAGACCATCGACTTCGC CGCGGAGAGAGCGCTCGCCAAGGACTTCCTCGCCAACTTCGCCGGCCCGCGCGGCGAGCC CAAGTACCTCAACATCCTCCAAGATGTCGCGAACCGGAAGATCCGCGCGGTCCAGATCGA GCTGGACGACCTGTTCCACTACAAGGATGCGGATGACGAGTTCTTGCAGAGGGTCACGGA GAACACGAAGCGCTACATCGGCATATTCGCGGACGCCATCGACGAGCTCATGCCGGAGTC CACCGAGGCGTACGCCGTCGACGAGGACAGGGACATCTTGATGACGCAGCGCGTCGACGA GGGAGCCGATGGCGGCGCAGACGGCACTGACCCCCTGCAGAGGATGCCGCCGGAGATCAG GCGGTTCTTTGAGGTGTACATCAAGGCTTTCTCAAAGGTGACTCCACTCACCATTAGGCA AGTGAAGGCATCCAACATCGGGCAGCTTGTCAAAATATCTGGAATCGTGACTCGCTGCTC GGATGTGAAGCCCTTGATGCAAGTTGCTGTTTATACATGTGAAGAATGTGGTTTTGAGAT ATACCAGGAAGTGACTGCTAGAGTATTTATGCCTCTCTTTGAATGCCCATCTCAAAGGTG CAAGCTGAACAAAGCCAAAGGGAATCTAATCCTTCAACTGCGAGCATCAAAATTTCTGAA ATTTCAAGAGGTGAAACTCCAAGAGTTAGCAGAACATGTACCAAAGGGTCACATCCCACG TTCTCTGACTGTTCATCTTAGAGGAGAGCTGACTAGAAAGGTTGCACCTGGAGATGTGGT TGAGATGTCAGGCATTTTCCTCCCCATGCCTTACTATGGATTCCGAGCCATGCGTGCAGG ATTGGTTGCTGATACCTACTTGGAATCAATGTCTATCACCCATTTCAAGAAAAAATATGA AGAATATGAACTTAAAGGTGATGAACAAGAACAAATTGACCGTTTGGCTGAGGATGGTGA TATCTACAATAAGTTGGCAAGGTCTTTGGCACCTGAAATATTTGGACATGAAGATGTCAA GAAAGCACTGCTGTTGCTACTTGTTGGCGCACCTCATCGGAAGCTTACAGATGGCATGAA GATAAGAGGAGACTTGCACATATGCCTGATGGGAGATCCTGGTGTTGCAAAGAGTCAACT TCTGAAGCATATCATCAATGTTGCTCCAAGAGGAGTGTATACCACAGGGCGTGGAAGCAG TGGTGTTGGTCTTACTGCTGCCGTCCAGAAAGATCCAGTTACAAATGAGTTTGTTCTTGA GGGAGGAGCACTGGTACTGGCAGATATGGGTATTTGTGCAATAGATGAGTTTGACAAGAT GGAAGAGTCAGACAGGACAGCAATCCATGAGGTGATGGAGCAGCAGACTGTTAGTATTGC GAAGGCTGGAATCACCACCTCCCTCAATGCAAGAACGGCAGTTTTGGCTGCTGCAAATCC AGCATGGGGAAGGTATGATATGAGGAGGACCCCAGCTGAAAACATCAATCTACCTCCAGC ACTTCTGTCTCGTTTTGACCTCCTTTGGTTGATCCTGGATCGCGCGGACATGGAAACCGA TCTTGAAATGGCAAGACATGTTGTTCATGTACATCAAAACCTTGAATCACCAGCTCTGGG GTTCACACCACTTGAACCACCAGTTCTTAGGGCATACATATCTACTGCGAGAAGAGTTGT TCCTTCTGTTCCTCGAGAGCTTGAGGAATACATTGCAACTGCCTATTCGAGCATCCGCCA AGAGGAAGCAAAATCAAATGCACCACACTCCTACACAACTATCAGGACACTTTTGAGCAT ACTCCGGATTTCTATTGCCTTGGCAAGGCTTAGATTCTCAGAAACCGTCGCTCAGAGCGA TGTCGATGAAGCGCTTCGGCTGATGCAGATGTCAAAGTACTCCCTATACTCAGATGACCG CCAGCGGTCTGGATTGGACGCGATTTCTGACATATATTCCATTCTGAGAGATGAAGCTGC AAGAACTAACAGCATGGATGTCAGATATGCTCATGCCCTTAACTTGATCTCCAGAAAGGG TTACAGCGAGGCTCAACTGAAGGAATGCTTGGAGGAGTATGCTTCCCTGAATGTTTGGCA GATCCACCCCAACACCTTTGATATCCATTTCATCGACGCGTAATGCAGGAAGAATTGATC GATCGATCTCCTCTCCTTCAAAGTTCTAACATACCCATGATGAGCTCATGATGGAAAATC TAGAGTTTGAAGCTCCAGGAAGTTGTGACCATGGCTAGGGAAGCCATTGATCAAGGTCTA ACAAGGCTGTAAAAGTACTAGGGATCTTAGATAAACTATAATTTTCAATGATGTTATTCT GGGTAGATGTAGCCTGTGAGAAATGTATTAGTAGAGGGAGCCATTGCTATCATTGTCCAC CTTGTGAGAAGCATTGTGGTTTTTTCAGCCATATTCTTGACTCTTGTTCAACACTTGATA CTGAAGTGTATGTATCATGGTGTGTTTAGTTGCTGGCATTTATGTTCTCAGACAGCAGCG ATTAAAAAAAAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)