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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1384 fasta sequence
[ATAGCAGATTAGAGATTGGGCTACAGCTAGCCTAAACACATGATTGTGGAGGATGTTTCAGAGTCCTCTATGACTCCATGCTCCATGACAAATGAGCTATAAAATAGCTCAATTCTGAAGCTCCATATGACCCCCTCATGGATGCAGAAGAATAGTAGAAAAGTACTTCAAGATGGAGAGAGTTCCTGCAGTTCATCTGGCAGTGGTGCTCCTGGCCTTCTGCTGCCTCATCCATGCATCATCAAGTGCTGAAACTCCACTCCCACCTGGTAATCTTCTCGGTTCCTCGCCTCCGTATCTTCTTCGTGGCATATTGTTTTTTCAGAAATTCATAGTAAAACATAATGAGATCTGAACATTCTGACTGAATATTGATGTTTGAGTCACAACCAGCCCTCAAGGTGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGGTGATCCGGGTCCAGCTCTCTTTTCCATCTCATAACTTTGATTAAATCAAGTTTTTTTTTTGAAAAAAAAAGAGAGAGATCAGCTTACACTTTTTTTAGAACCTATATATTCAGATAAGTAATAACTGTTCATGTTCACCATGCTTTCAAGTAGTACTAGTAGCTACTTTTCAGAACATGTTCTGTTTAGCTGCAATTGCAAAACTGTCTGCTCAATCTCAACCATGATCCATAAGGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCCAACGATCGGCACTCGCCATGGGGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAATCTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACCTGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTTTCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAGTCGCCGGCACCATAATATTATAACAATTAATTATAACATTTCTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGGGCGGGGCACCCCCTCCCCCCAATGGGGGGGGATAAACGCCGGGCCCTGGGGGGCCTTTTTTACACCGGGGGGGGGGAAAAAACCGGGGGGTGCCCCAATTTAACCGGTTGGGGAAAACCCCCCCTTTCCCCGGGGGGGGAAAATAAAAAAGCCCCCCCCAGTGCCCCCTTCCCAAATGGG]
[+] EMBL AK110531 [ATAGCAGATTAGAGATTGGGCTACAGCTAGCCTAAACACATGATTGTGGAGGATGTTTCAGAGTCCTCTATGACTCCATGCTCCATGACAAATGAGCTATAAAATAGCTCAATTCTGAAGCTCCATATGACCCCCTCATGGATGCAGAAGAATAGTAGAAAAGTACTTCAAGATGGAGAGAGTTCCTGCAGTTCATCTGGCAGTGGTGCTCCTGGCCTTCTGCTGCCTCATCCATGCATCATCAAGTGCTGAAACTCCACTCCCACCTGGTAATCTTCTCGGTTCCTCGCCTCCGTATCTTCTTCGTGGCATATTGTTTTTTCAGAAATTCATAGTAAAACATAATGAGATCTGAACATTCTGACTGAATATTGATGTTTGAGTCACAACCAGCCCTCAAGGTGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGGTGATCCGGGTCCAGCTCTCTTTTCCATCTCATAACTTTGATTAAATCAAGTTTTTTTTTTGAAAAAAAAAGAGAGAGATCAGCTTACACTTTTTTTAGAACCTATATATTCAGATAAGTAATAACTGTTCATGTTCACCATGCTTTCAAGTAGTACTAGTAGCTACTTTTCAGAACATGTTCTGTTTAGCTGCAATTGCAAAACTGTCTGCTCAATCTCAACCATGATCCATAAGGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCCAACGATCGGCACTCGCCATGGGGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAATCTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACCTGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTTTCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAGTCGCCGGCACCATAATATTATAACAATTAATTATAACATTTCTAG ]
[+] EMBL CA756343 [ ggTGGTGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAATCTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACCTGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTTTCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAGTCGCCGGCACCATAATATTATAACAATTAATTATAACATTTCTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGGGGGGGGGCGGGGCACCCCCTCCCCCCAATGGGGGGGGATAAACGCCGGGCCCTGGGGGGCCTTTTTTACACCGGGGGGGGGGAAAAAACCGGGGGGTGCCCCAATTTAACCGGTTGGGGAAAACCCCCCCTTTCCCCGGGGGGGGAAAATAAAAAAGCCCCCCCCAGTGCCCCCTTCCCAAATGGG]
consensusID : consensus_4098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[TTCAAGATGGAGAGAGTTCCTGCAGTTCATCTGGCAGTGGTGCTCCTGGCCTTCTGCTGCCTCATCCATGCATCATCAAGTGCTGAAACTCCACTCCCACCTGCCCTCAAGGTGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCCAACGATCGGCACTCGCCATGGGGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAATCTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACCTGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTTTCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAGTCGCCGGCACCATAATATTATNACNNANAAAAAAAAAAANAAAANAAAAAGTAAAAAAGAAAAAAAAAGGANAAAAAAAAAAAAAAAAAANNAAACCTCGGGGGG]
[+] EMBL CA756419 [TTCAAGATGGAGAGAGTTCCTGCAGTTCATCTGGCAGTGGTGCTCCTGGCCTTCTGCTGCCTCATCCATGCATCATCAAGTGCTGAAACTCCACTCCCACCTGCCCTCAAGGTGATGCAGCGTTTTGAAGCAACTCCAGTCTCTAGCAGAGGAGATGATCAGGCTGCCGCCGTCATCGCCGGAGAACCGGAGGCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCCAACGATCGGCACTCGCCATGGGGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAATCTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACCTGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTTTCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAGTCGCCGGCACCATAATATTATNACNNANAAAAAAAAAAANAAAANAAAAAGTAAAAAAGAAAAAAAAAGGANAAAAAAAAAAAAAAAAAANNAAACCTCGGGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4098#0 ATAGCAGATTAGAGATTGGGCTACAGCTAGCCTAAACACATGATTGTGGAGGATGTTTCA 60
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 GAGTCCTCTATGACTCCATGCTCCATGACAAATGAGCTATAAAATAGCTCAATTCTGAAG 120
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 CTCCATATGACCCCCTCATGGATGCAGAAGAATAGTAGAAAAGTACTTCAAGATGGAGAG 180
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 AGTTCCTGCAGTTCATCTGGCAGTGGTGCTCCTGGCCTTCTGCTGCCTCATCCATGCATC 240
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 ATCAAGTGCTGAAACTCCACTCCCACCTGGTAATCTTCTCGGTTCCTCGCCTCCGTATCT 300
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 TCTTCGTGGCATATTGTTTTTTCAGAAATTCATAGTAAAACATAATGAGATCTGAACATT 360
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 CTGACTGAATATTGATGTTTGAGTCACAACCAGCCCTCAAGGTGATGCAGCGTTTTGAAG 420
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 CAACTCCAGTCTCTAGCAGAGGAGATGATCAGGTGATCCGGGTCCAGCTCTCTTTTCCAT 480
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 CTCATAACTTTGATTAAATCAAGTTTTTTTTTTGAAAAAAAAAGAGAGAGATCAGCTTAC 540
consensus_4098#1 ----------------------------------TTCAAGATGGAGAGAGTTC---CTGC 23
** * ******* ** * *
consensus_4098#0 ACTTTTTTTAGAACCTATATATTCAGATAAGTAATAACT-GTTCATGT-TCACCATGCTT 598
consensus_4098#1 AGTTCATCTGGCAGTGGTGCTCCTGGCCTTCTGCTGCCTCATCCATGCATCATCAAGTGC 83
* ** * * * * * * * * ** * **** *** ** *
consensus_4098#0 TCAAGTAGTACTAGTAGCTACTTTTCAGAACATGTTCTGTTTAGCTGCAATTGCAAAACT 658
consensus_4098#1 TGAAACTCCACTCCCACCTGCCCTCAAGGTGATGCAGCGTTTTGAAGCAACTCCA----- 138
* ** *** * ** * * ** *** **** * **** * **
consensus_4098#0 GTCTGCTCAATCTCAACCATGATCCATAAGGCTGCCGCCGTCATCGCCGGAGAACCGGAG 718
consensus_4098#1 GTCT--CTAGCAGAGGAGATGATC----AGGCTGCCGCCGTCATCGCCGGAGAACCGGAG 192
**** * ****** ********************************
consensus_4098#0 GCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCC 778
consensus_4098#1 GCCGGCGAGGTCAACGGCAGGATGGAACTGGAGCTCACCGATTACCCGGGCTCCGGCGCC 252
************************************************************
consensus_4098#0 AACGATCGGCACTCGCCATGGGGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAAT 838
consensus_4098#1 AACGATCGGCACTCGCCATGGGGGCAGGAGAGGAGAAACTGAGCAGCAGCAGCAAAAAAT 312
************************************************************
consensus_4098#0 CTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACC 898
consensus_4098#1 CTTCAGAGAAAACTTCATCCATGGTCACTTTCTTCAGAGAGAAAATTCAGACTTTGTACC 372
************************************************************
consensus_4098#0 TGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTT 958
consensus_4098#1 TGTACCATATCATGTATACTTAATTATCTCTACTATTTTCTACACAACTGTTACAGTGTT 432
************************************************************
consensus_4098#0 TCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAG 1018
consensus_4098#1 TCTACACCCTGTGTAACATGAAAGAGAGGATTTGGGAGTTAATTAACGACTGATAATCAG 492
************************************************************
consensus_4098#0 TCGCCGGCACCATAATATTATAACAATTAATTATAACATTTCTAGTAAAAAAAAAAAAAA 1078
consensus_4098#1 TCGCCGGCACCATAATATTATNACNNANAA----------------AAAAAAAAANAAAA 536
********************* ** ** ********* ****
consensus_4098#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1138
consensus_4098#1 NAAAAAGTAAAAAAGAAAAAAAAAGGANAAAAAAAAAAAAAAAAAANNAAACCTCGGGGG 596
***** ****** ********* * ****************** ***
consensus_4098#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCGGG 1198
consensus_4098#1 G----------------------------------------------------------- 597
consensus_4098#0 GGGGGGGCGGGGCACCCCCTCCCCCCAATGGGGGGGGATAAACGCCGGGCCCTGGGGGGC 1258
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 CTTTTTTACACCGGGGGGGGGGAAAAAACCGGGGGGTGCCCCAATTTAACCGGTTGGGGA 1318
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 AAACCCCCCCTTTCCCCGGGGGGGGAAAATAAAAAAGCCCCCCCCAGTGCCCCCTTCCCA 1378
consensus_4098#1 ------------------------------------------------------------
consensus_4098#0 AATGGG 1384
consensus_4098#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||