These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence [TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACTTATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTTATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCTCGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTACATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTCTCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTTCTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCAAGATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATCTGAGCCCAATTAGGCCTCCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAAAATCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC] [+] EMBL CB631471 [TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACTTATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTTATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCTCGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTACATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTCTCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTTCTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCATTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCAAGATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATCTGAGCCCAATTAGGCCTCCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAAAATCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC] consensusID : consensus_4118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CCGCTGTTTTTATTCATTTTGTGTTTTAGAATTTTTGGAAGACAGTGGAAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTTTTTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGGTCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTTCTTGCAACTAGGATGGTCATTCTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTCTGTATGACTGAGTAAAGGCGAATTCTGAGCCTACTTGGGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGCGGC] [-] EMBL AU225796 [CCGCTGTTTTTATTCATTTTGTGTTTTAGAATTTTTGGAAGACAGTGGAAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTTTTTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGGTCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTTCTTGCAACTAGGATGGTCATTCTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTCTGTATGACTGAGTAAAGGCGAATTCTGAGCCTACTTGGGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGCGGC] consensusID : consensus_4118#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [TCAATTGGACCTGGTCCTATCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTTNTTGCAANTAGGATGGTCATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAATTTGANCCTACTTGTAAAGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA] [+] EMBL AA754020 [TCAATTGGACCTGGTCCTATCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTTNTTGCAANTAGGATGGTCATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCAAGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAATTTGANCCTACTTGTAAAGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4118#1 ------------------------------------------------------------ consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 TGCCCTTCTGTAACATATTCACCTGCTAATGTTAGGTGGTTCTTGCACCTAGGATGGTCA 60 consensus_4118#1 ------------------------------------------------------------ consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 TTCTGATAAATGATAACCAGGCAGATCCATTTACATCAGTTGAGGGACATAAAATAGACT 120 consensus_4118#1 ------------------------------------------------------------ consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 TATTCCGTGTCAGTTTCCTGCCTGGGGCTGGTCGGGCAATGTGAAATCTGAGCCGCTGTT 180 consensus_4118#1 ------------------------------------------------------------ consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 ATGGATTTTTCACTCTTTAGTCACCATTTTGCTCTATACACTGCCATCCCCCCTCACTCT 240 consensus_4118#1 ------------------------------------------------------------ consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 CGCTGCGCGCTTGCGCGCGAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAATGTACGTAC 300 consensus_4118#1 -------------------------------CCGCTGTTTTTATTCATTTTGTGTTTTAG 29 consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 ATTCTGCTTATATTTTGGAATGGAGGGAGTATATATGTATGGTTTTCTCATCTGTGTGTC 360 consensus_4118#1 AATTTTTGGAAGACAGTGGAAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTTT 89 consensus_4118#2 ------------------------------------------------------------ consensus_4118#0 TCTAGAATGTTGGAAACATGGAAAGGAATGTGGATGAAGGGCAATGATGATCAACCTTTT 420 consensus_4118#1 TTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGGTCCTA 149 consensus_4118#2 -----------------------------------------TCAATTGGACCTGGTCCTA 19 consensus_4118#0 CTGACAATCCTGCCATTGAACAATCAAGGCAGCTGTGGGTGTCAATTGGACCTGATCCTA 480 ************* ***** consensus_4118#1 TCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTTCTTGCAACTAGGATGGTC 209 consensus_4118#2 TCATTTTTGGCAACCTATCCACTCACTAATGTTAGGTGGTTN-TTGCAANTAGGATGGTC 78 consensus_4118#0 TCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTC-TTGCACCTAGGATGGTC 539 **** * ********************************** ***** ********** consensus_4118#1 ATTCTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCA 269 consensus_4118#2 ATTNTGTTAATGATAGCCAGGGCAAATCCACTTACATTACGATGCGTAGATTGTGGTGCA 138 consensus_4118#0 ATTCTGTTAATGATAACCAGGGCAAATCCACTTGCATTATGATGGATAGATGGTGGAGCA 599 *** *********** ***************** ***** **** ***** **** *** consensus_4118#1 AGATATGTGGCGGTTGGGTCTGTATGACTGAGTAAAGGCGAATTCTGAGCCTACTTG--- 326 consensus_4118#2 AGATATGTGGCGGTTGGGTNTGTATGACTGAGTAAAGGCGAATT-TGANCCTACTTGTAA 197 consensus_4118#0 AGATATGTGGCTGTTGGATCTTTACGGTTGAGTAAAGGCGAATC-TGAGCCCAATTAGGC 658 *********** ***** * * ** * *************** *** ** * ** consensus_4118#1 -GGCATAAAAAGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGCGGC--------------- 370 consensus_4118#2 AGACNAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA 257 consensus_4118#0 CTCCTATATAATGGAGGATTTTTGTAGGATTTTCACGGGTATTGAACTAATTCCTGGGAA 718 * * ** * * * * consensus_4118#1 ----------------------------------------------------------- consensus_4118#2 AAAAAAAA--------------------------------------------------- 265 consensus_4118#0 AATCCTGTGTTCCAAAGGAACCCTTGTTACTATGATGTGTCACATCCGGTCAAAGTACC 777 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||