cluster # 412

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Oryza sativa
cluster # 412 cluster # 412 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_412#0 length = 385 sequences # 1

consensus_412#1 length = 285 sequences # 1

consensusID : consensus_412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [GCTCGAGATGATGATGATCGGTCATTCGAATCGAATTGATTGATGCCAYCGATACCGGGGGTGGCACTACCGGAGGAGCCGGTGGAGGCACCGAGGTAAGGTTCCCGAGTTCAGGTGGCGGCCCGAGGGGCAGTCGGCGGCGAGGTGGTTGAGCCCGAAGCCGTTGCAGTCGTTACCGCCTTCCTAGTTCACGTACGTCCACACCGGTTAACTCCCGTAGTTCTTCAAGCTCTGGGATAGCATGGACGGTGGTGAGTGGCACCTCCTAGAAAACTTCGTCTAGCTCATGGACGAAGCTAGGTTCACCCACGGAACGGAGCTCAAGTCGTTCCAACCTAAGCAGATGGCACTCTTGGTGTTCCAGAGGGCCCATGATKCYACCTTC]

[+] EMBL BE229476             [GCTCGAGATGATGATGATCGGTCATTCGAATCGAATTGATTGATGCCAYCGATACCGGGGGTGGCACTACCGGAGGAGCCGGTGGAGGCACCGAGGTAAGGTTCCCGAGTTCAGGTGGCGGCCCGAGGGGCAGTCGGCGGCGAGGTGGTTGAGCCCGAAGCCGTTGCAGTCGTTACCGCCTTCCTAGTTCACGTACGTCCACACCGGTTAACTCCCGTAGTTCTTCAAGCTCTGGGATAGCATGGACGGTGGTGAGTGGCACCTCCTAGAAAACTTCGTCTAGCTCATGGACGAAGCTAGGTTCACCCACGGAACGGAGCTCAAGTCGTTCCAACCTAAGCAGATGGCACTCTTGGTGTTCCAGAGGGCCCATGATKCYACCTTC]




>consensus_412#0
GCTCGAGATGATGATGATCGGTCATTCGAATCGAATTGATTGATGCCAYCGATACCGGGG
GTGGCACTACCGGAGGAGCCGGTGGAGGCACCGAGGTAAGGTTCCCGAGTTCAGGTGGCG
GCCCGAGGGGCAGTCGGCGGCGAGGTGGTTGAGCCCGAAGCCGTTGCAGTCGTTACCGCC
TTCCTAGTTCACGTACGTCCACACCGGTTAACTCCCGTAGTTCTTCAAGCTCTGGGATAG
CATGGACGGTGGTGAGTGGCACCTCCTAGAAAACTTCGTCTAGCTCATGGACGAAGCTAG
GTTCACCCACGGAACGGAGCTCAAGTCGTTCCAACCTAAGCAGATGGCACTCTTGGTGTT
CCAGAGGGCCCATGATKCYACCTTC

consensusID : consensus_412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [CCACTCGACGTCTCTACCGGGGGAGGCACTACCGCAGCAGCCGGTGGTGGCAGCGAGGGAAGGTCCCCGAGTTCAGGTGGCGGCCGTACGGGCAGCGGGCGGCGAGGCCGTTGAGGTCGAAGCCGTTGCAGTCGTTACCGCCGTCCTAGTCCACGTACGTCCACACCGGCTAACTCCCGTAGTTCTTCAAGCTCTGGGAGARGATGGACGGTGGCGAGTGGCACCTCCTGGAGGACTTCGTCTAGCTCATGGAMGAGGCAAGGTTCACCCACGGGACGGARCTCA]

[+] EMBL BE230699             [CCACTCGACGTCTCTACCGGGGGAGGCACTACCGCAGCAGCCGGTGGTGGCAGCGAGGGAAGGTCCCCGAGTTCAGGTGGCGGCCGTACGGGCAGCGGGCGGCGAGGCCGTTGAGGTCGAAGCCGTTGCAGTCGTTACCGCCGTCCTAGTCCACGTACGTCCACACCGGCTAACTCCCGTAGTTCTTCAAGCTCTGGGAGARGATGGACGGTGGCGAGTGGCACCTCCTGGAGGACTTCGTCTAGCTCATGGAMGAGGCAAGGTTCACCCACGGGACGGARCTCA]




>consensus_412#1
CCACTCGACGTCTCTACCGGGGGAGGCACTACCGCAGCAGCCGGTGGTGGCAGCGAGGGA
AGGTCCCCGAGTTCAGGTGGCGGCCGTACGGGCAGCGGGCGGCGAGGCCGTTGAGGTCGA
AGCCGTTGCAGTCGTTACCGCCGTCCTAGTCCACGTACGTCCACACCGGCTAACTCCCGT
AGTTCTTCAAGCTCTGGGAGARGATGGACGGTGGCGAGTGGCACCTCCTGGAGGACTTCG
TCTAGCTCATGGAMGAGGCAAGGTTCACCCACGGGACGGARCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_412#0      GCTCGAGATGATGATGATCGGTCATTCGAATCGAATTGATTGATGCCAYCGATACCGGGG 60
consensus_412#1      -----------------------------------CCACTCGACGTCTC---TACCGGGG 22
                                                            * ** * *     ********

consensus_412#0      GTGGCACTACCGGAGGAGCCGGTGGAGGCACCGAGGTAAGGTTCCCGAGTTCAGGTGGCG 120
consensus_412#1      GAGGCACTACCGCAGCAGCCGGTGGTGGCAGCGAGGGAAGGTCCCCGAGTTCAGGTGGCG 82
                     * ********** ** ********* **** ***** ***** *****************

consensus_412#0      GCCCGAGGGGCAGTCGGCGGCGAGGTGGTTGAGCCCGAAGCCGTTGCAGTCGTTACCGCC 180
consensus_412#1      GCCGTACGGGCAGCGGGCGGCGAGGCCGTTGAGGTCGAAGCCGTTGCAGTCGTTACCGCC 142
                     ***  * ******  **********  ******  *************************

consensus_412#0      TTCCTAGTTCACGTACGTCCACACCGGTTAACTCCCGTAGTTCTTCAAGCTCTGGGATAG 240
consensus_412#1      GTCCTAGTCCACGTACGTCCACACCGGCTAACTCCCGTAGTTCTTCAAGCTCTGGGAGAR 202
                      ******* ****************** ***************************** * 

consensus_412#0      CATGGACGGTGGTGAGTGGCACCTCCTAGAAAACTTCGTCTAGCTCATGGACGAAGCTAG 300
consensus_412#1      GATGGACGGTGGCGAGTGGCACCTCCTGGAGGACTTCGTCTAGCTCATGGAMGAGGCAAG 262
                      *********** ************** **  ******************* ** ** **

consensus_412#0      GTTCACCCACGGAACGGAGCTCAAGTCGTTCCAACCTAAGCAGATGGCACTCTTGGTGTT 360
consensus_412#1      GTTCACCCACGGGACGGARCTCA------------------------------------- 285
                     ************ ***** ****                                     

consensus_412#0      CCAGAGGGCCCATGATKCYACCTTC 385
consensus_412#1      -------------------------