These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1135 fasta sequence [ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGCGCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCTCCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCCGGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGCAGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCGTGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCTCCATCGTCGTGCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCCAGCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCGTCTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCGTTCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATCCTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATGAGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACGTTCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA] [+] EMBL AK121039 [ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGCGCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCTCCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCCGGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGCAGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCGTGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCTCCATCGTCGTGCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCCAGCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCGTCTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCGTTCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATCCTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATGAGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACGTTCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAA ] [+] EMBL AU173878 [ CGGCGGGCATGGCCGGCACGTTCTACCTCTTCGCGGCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTTGACGCCGCCCACCCATCCTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA] consensusID : consensus_4123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 835 fasta sequence [AATCTTTTCCACATCTATGTCCTTATTCTATCCTTATATGAGCTTATACTCGTTCCTGATACAATCGGGACATGAGGCCGCTCGTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCGTACTTGGCCCGTTATTGTTTCGAGGGTGACAGCCGTTCCTCTTCCGGTTCTCCGGGGGTTTTTTCTCGGTCGTCCATAGTGTATGCGCGAAAATGTGTCGCGCGGGGTTTAAAGCAAAGTTCGGTGGGTTCGGCCGGTATAGGATGTCGGTTCGAGATCTCCCTTCGGGTTGCGGGCCAGGGCACGGAATCGGGACGCGGCNAACCCGGTTAATGAGCNCGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGCCGNCGGGCATGGCCGGCACGTTTACCTCTTCGCGGCCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCACCCATCTTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC] [-] EMBL AW155119 [AATCTTTTCCACATCTATGTCCTTATTCTATCCTTATATGAGCTTATACTCGTTCCTGATACAATCGGGACATGAGGCCGCTCGTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCGTACTTGGCCCGTTATTGTTTCGAGGGTGACAGCCGTTCCTCTTCCGGTTCTCCGGGGGTTTTTTCTCGGTCGTCCATAGTGTATGCGCGAAAATGTGTCGCGCGGGGTTTAAAGCAAAGTTCGGTGGGTTCGGCCGGTATAGGATGTCGGTTCGAGATCTCCCTTCGGGTTGCGGGCCAGGGCACGGAATCGGGACGCGGCNAACCCGGTTAATGAGCNCGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGCCGNCGGGCATGGCCGGCACGTTTACCTCTTCGCGGCCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCCGGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCACCCATCTTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGGTCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTGTAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGATGGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGATCATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4123#0 ACGACGACGCGCGCCAGGTGCTCGTCCGCACCACCGGCGGCGACGCCGCCCTCGCCGAGC 60 consensus_4123#1 ------------------------------------------------------------ consensus_4123#0 GCCGCCTCCAGGAGATCGTGTCGTCCGTCAAGGAGAGCGCGACGAAGCAGCAGCTGTCCT 120 consensus_4123#1 ------------------------------------------------------------ consensus_4123#0 CCGCCGCCGCCGCCGGCGGCGGCGGTGCGTCAACGGGCGTGTGGCGCGACATCCTGGTCC 180 consensus_4123#1 ------------------------------------------------------------ consensus_4123#0 GGCCGACGCCGGCGGTGCGGCGCGTGCTGTTCGCCATCCTCGGCCTGCAGTTCTTCCAGC 240 consensus_4123#1 ------------------------------------------------------------ consensus_4123#0 AGGCGTCGGGCGTGGCGGCGATGGTGCTGTACGCGCCGCGGGTGTTCAACCACGTCGGCG 300 consensus_4123#1 -----------------------------------AATCTTTTCCACATCTATGTCCTTA 25 * * ** * * *** consensus_4123#0 TGACGTCGGAGCGCGCGGTGCTCGGCGCCACCGTCCTCCTCGGCGCCACCAAGACCGCCT 360 consensus_4123#1 TTCTATCCTTATATGAGCTTATACTCGTTCCTGATACAATCGGGACA--TGAGGCCGCTC 83 * ** * * * * ** * * **** * ** **** consensus_4123#0 CCATCGTCGT-GCCGCTCTTCCTCGCCGACCGCCTCGGCCGCCGCCCGATGCTGCTCTCC 419 consensus_4123#1 GTCCCTTTACAGCCTAATTTCTATTTTGCTTTTCTCGTACTTGGCCCGTTATTGTTT--- 140 * * *** *** * **** * ***** * ** * consensus_4123#0 AGCGCGGGCGGCATGGCCGTGTCGCTCCTCGTCCTCGGCTTCTCCCTGCGCGTGTCGTCG 479 consensus_4123#1 --CGAGGGTGACA-------GCCGTTCCTCTTCC---GGTTCTCCGGGGG-------TTT 181 ** *** * ** * ** ***** *** * ****** * * * consensus_4123#0 TCTTCCGGCTCCGGCTCCGAGTGGTGGGCGGCGGCGACGAGCGTGGCGGCGGCGGCGGCG 539 consensus_4123#1 TTTCTCGGTC---GTCCATAGTG-TATGCG----CGA-AAATGTGTCGC-----GCGGGG 227 * * *** * * **** * *** *** * *** ** **** * consensus_4123#0 TTCATGGCGACGTTCTCGCTGGGGTTCGGGCCGGTGATATGGATGTACGGGTCGGAGATC 599 consensus_4123#1 TTTAAAGCAAAGTT--CGGTGGG--TTCGGCCGGT-ATA-GGATGTC--GGTTCGAGATC 279 ** * ** * *** ** **** * ******* *** ****** *** ****** consensus_4123#0 CTGCCGCTGCGGCTGCGGGCGCAGGGCACGGGAATCGGGACGGCGGCGAACCGGGTGATG 659 consensus_4123#1 T--CCCTTCGGGTTGCGGGC-CAGGGCACGG-AATCGGGACGCGGCNAACCCGGTTAATG 335 ** * ** ******* ********** ********** * * **** * *** consensus_4123#0 AGCGCGGCGGTGGGGATGAGCTTCATCTCGCTGTACGAGGCGGCGGGCATGGCCGGCACG 719 consensus_4123#1 AGCNCG-CGGTGGGGATGAGCTTCATCTCGCTGTACGAGCCGNCGGGCATGGCCGGCACG 394 *** ** ******************************** ** ***************** consensus_4123#0 TTCTACCTCTTCGCGGC-GTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCC 778 consensus_4123#1 TT-TACCTCTTCGCGGCCGTGCTCCGCGGCGGCGTGGGTGTTCGTCTACGCCTGCCTCCC 453 ** ************** ****************************************** consensus_4123#0 GGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCCCACCCATC 838 consensus_4123#1 GGAGACCAAGGGGAGGAGCCTCGAGGAGATGGAGGCGCTCTTCGACGCCGCC-ACCCATC 512 **************************************************** ******* consensus_4123#0 CTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGG 898 consensus_4123#1 TTCGCCGCCGCCGGCGTCGTGATCGATCACGCGCGCGCGGGAAGACGAGGTTTTGTGTGG 572 *********************************************************** consensus_4123#0 TCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTG 958 consensus_4123#1 TCGTCGCCCTCCTCGCCGGCGACGGCGCCGCCGGCGTCGTCGTGATCGGGAAAAAGGTTG 632 ************************************************************ consensus_4123#0 TAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGAT 1018 consensus_4123#1 TAAAATGTGGGATAGGGTGTGGTAAATTGGTAATTAATTAAGGAATGCAGTAAGCAGGAT 692 ************************************************************ consensus_4123#0 GGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGAT 1078 consensus_4123#1 GGGTAAATGTTAATTTGTTGGTGTGTAATATAATTTTTATGGCAAGGTCACCACCAAGAT 752 ************************************************************ consensus_4123#0 CATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAA--- 1135 consensus_4123#1 CATCAGCCAATGTTTGTAATGCTCTCCATGAAACGATAGGGATTACAGTCCAAAAAAAAA 812 ********************************************************* consensus_4123#0 ----------------------- consensus_4123#1 AAAAAAAAACTCGAGACTAGTTC 835 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||