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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1721 fasta sequence
[CCGTCTCCGTTCACTGCCCTCGATTGCAATCCACGTTCGTCGTGAGTGACGATGGGAAGCGCCGGTGCGGCGCCGGTGGCGACGGCGGCCGGCGGCGGCGGTGGAGACGGAGACCTGCACGTGGTGATGTTCCCGTTCCTGGCGTTCGGCCACATCAGCCCGTTCGCGCAGCTGGCGCGGAAGATGGCCGGCGTCGGCGCCGGGGTGCGCGTCACGTTCCTGTCGGCGGCGGCCAACGTGCCCCGCGTCGAGGCCATGCTGGGCGGCACCGGCGGCACGTCCACCGTGGCGGCGCTCGAGCTGCCGCGCGTGCCGGGGCTCCCCGAGGGCGCGGAGAGCACGGCGGAGGTGTCGGCGGACGGTGCCGAGCTGCTCAAGCTCGCCGTCGACGGCACGCGGCCGCAGGTGGAGGCGCTGCTGGCGAGGCTCCACCCGGACGTCGTGCTGTTCGACTTCGCCACGCCGTGGGTCGTCGACGTCGCCAGGCCGCTCGGCGTCAAGGCAGCGCTCTTCTCCGTGTTCGCCGCGGTCTCCGGCGCGTACGTCATGGCCCCCGCGCGCCGCCGCCTCCCCGGGCCGGGGCGCCCGACCGTCGACGACCTCGCGTCGGCGCCGGAGGGGTTCCCGCCGTCGTCGCCGCTCGCCACCGTGCCGGCCTACCAGGCCGCCGACTTCAGCTACGTGTTCGAGAGCTTCCACGGCATGCCGTGCGTGTACGACCGCGTCGCCGCATGCCACAACGCCTGCGACGCCCTGGTCATCAAGACCTGCGCCGAGATGGAAGGCCCCTACATCGACTACATCGCGGCGGAGCACGGCAAGCCGGTGCTCGTGACGGGGCCCATCGTGCCGGAGCCGCCGCGAGGCGAGCTGGAGGAGCGGTGGGCGACGTGGCTCTCCTCCTTCCCGGACAACTCCGTCGTGTTCGCCTCCTTCGGCAGCGAGACCTTCCTGCTGCACGCCGCCGCGACGGAGCTCCTCCTCGGACTAGAGGCCACCGCCCTGCCGTTCCTCGCAGTGCTCAACTTCCCCAAGGGCACGGACGCCGAGGCGGAGCTGAGGAAGCTCACGCCGCCGGGGTTGGAGGAGAGGGTGAAGGGGAGAGGGATCCTGCACACCGGGTGGGTGCAGCAGCAGCACATCCTGCGCCACCGCAGCGTGGGCTGCTTCGTCAACCACTCCGGGCTCAGCTCCGTCGTGGAGGGGCTCGTCGCCGGCTGCCGCCTCGTGCTGCTGCCGATGAAGGGCGACCAGTACCTCAACGCCGCGCTGTTCGCGCGCGAGCTCCGCGGGCACCGAGGTCGCGCGCCGCGCCCGCGACGGGTGGTTCGGGCGTGAGGACGTGCGCGACGCGCTGGCGGCGGCGTTCGCCGGAGGAGAAGACGGCGGCGGCGAGGAGAAGAAATGGCGGGAGTTCTTGATGGACGACGCCGTGCAGAGGAGGTTCGTGCGGGAGTTCGTGGCGGAGCTGAGAAGGCTCAAGGGCTGAAAACGGAACGTCACGCGTCGTTAATCAGATCGACAGCTGTCACAACTCTGAAGAAAATCGGACTCTGTTCTGAAGACTGTGAAGAGAAGGAATCAACGGCTGTGATTGCTTGATACTGCATCGCGGTTCTCGCTCTAGGGAGTACTACATCCGTCATAAAATAAAATAAGTGCAGTTTTGCACTGGTTATATCCAACGTCTGACTTAACGTCTTATTTATAAAAATTATTTT]
[+] EMBL AK121144 [CCGTCTCCGTTCACTGCCCTCGATTGCAATCCACGTTCGTCGTGAGTGACGATGGGAAGCGCCGGTGCGGCGCCGGTGGCGACGGCGGCCGGCGGCGGCGGTGGAGACGGAGACCTGCACGTGGTGATGTTCCCGTTCCTGGCGTTCGGCCACATCAGCCCGTTCGCGCAGCTGGCGCGGAAGATGGCCGGCGTCGGCGCCGGGGTGCGCGTCACGTTCCTGTCGGCGGCGGCCAACGTGCCCCGCGTCGAGGCCATGCTGGGCGGCACCGGCGGCACGTCCACCGTGGCGGCGCTCGAGCTGCCGCGCGTGCCGGGGCTCCCCGAGGGCGCGGAGAGCACGGCGGAGGTGTCGGCGGACGGTGCCGAGCTGCTCAAGCTCGCCGTCGACGGCACGCGGCCGCAGGTGGAGGCGCTGCTGGCGAGGCTCCACCCGGACGTCGTGCTGTTCGACTTCGCCACGCCGTGGGTCGTCGACGTCGCCAGGCCGCTCGGCGTCAAGGCAGCGCTCTTCTCCGTGTTCGCCGCGGTCTCCGGCGCGTACGTCATGGCCCCCGCGCGCCGCCGCCTCCCCGGGCCGGGGCGCCCGACCGTCGACGACCTCGCGTCGGCGCCGGAGGGGTTCCCGCCGTCGTCGCCGCTCGCCACCGTGCCGGCCTACCAGGCCGCCGACTTCAGCTACGTGTTCGAGAGCTTCCACGGCATGCCGTGCGTGTACGACCGCGTCGCCGCATGCCACAACGCCTGCGACGCCCTGGTCATCAAGACCTGCGCCGAGATGGAAGGCCCCTACATCGACTACATCGCGGCGGAGCACGGCAAGCCGGTGCTCGTGACGGGGCCCATCGTGCCGGAGCCGCCGCGAGGCGAGCTGGAGGAGCGGTGGGCGACGTGGCTCTCCTCCTTCCCGGACAACTCCGTCGTGTTCGCCTCCTTCGGCAGCGAGACCTTCCTGCTGCACGCCGCCGCGACGGAGCTCCTCCTCGGACTAGAGGCCACCGCCCTGCCGTTCCTCGCAGTGCTCAACTTCCCCAAGGGCACGGACGCCGAGGCGGAGCTGAGGAAGCTCACGCCGCCGGGGTTGGAGGAGAGGGTGAAGGGGAGAGGGATCCTGCACACCGGGTGGGTGCAGCAGCAGCACATCCTGCGCCACCGCAGCGTGGGCTGCTTCGTCAACCACTCCGGGCTCAGCTCCGTCGTGGAGGGGCTCGTCGCCGGCTGCCGCCTCGTGCTGCTGCCGATGAAGGGCGACCAGTACCTCAACGCCGCGCTGTTCGCGCGCGAGCTCCGCGGGCACCGAGGTCGCGCGCCGCGCCCGCGACGGGTGGTTCGGGCGTGAGGACGTGCGCGACGCGCTGGCGGCGGCGTTCGCCGGAGGAGAAGACGGCGGCGGCGAGGAGAAGAAATGGCGGGAGTTCTTGATGGACGACGCCGTGCAGAGGAGGTTCGTGCGGGAGTTCGTGGCGGAGCTGAGAAGGCTCAAGGGCTGAAAACGGAACGTCACGCGTCGTTAATCAGATCGACAGCTGTCACAACTCTGAAGAAAATCGGACTCTGTTCTGAAGACTGTGAAGAGAAGGAATCAACGGCTGTGATTGCTTGATACTGCATCGCGGTTCTCGCTCTAGGGAGTACTACATCCGTCATAAAATAAAATAAGTGCAGTTTTGCACTGGTTATATCCAACGTCTGACTTAACGTCTTATTTATAAAAATTATTTT]
consensusID : consensus_4136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1113 fasta sequence
[CCTGACGGTCCCCGCGCGCCGTCGTCTCCACCACGGGGCGGCGTCGTGCCCGACCGTCGACGACCTCGCCACGGCGCCCGTGGGGTTCCCGCCGTCGTCGTCGCTGGCCACCGTGCCGACCTACCAGGCCGCCGACTTCACCTACGTGTTCACCAGCTTCCACGGCATGCCCAGCGCGTACGACCGCGTCGCCGCCTGCGACAAGGCCAGCGACGTCCTCGTCTTCAAGACCTGCGCCGAGATGGAAGGCCCCTACATCGAATACGTCGCCACGCAATACGACAAGCCCATTCTCGTCACGGGTCCCCTCGTGCCGGAGCCGCCGCATGGCGAGCTGGAGGAGCGGTGGGAGACATGGCTCTCCTCCTTCCCGGACAACGCCGTCGTCTTCGCCTCCTTCGGCAGCGAGACGTTCCTTCCAACCGCCGCCGCGACGGAGCTCCTCCTCGGACTGGAGGCCACCGGCCAGCCGTTCGTCGCCGTGCTCAACTTCCCTAGGAGCGTGGACGCCGAGGCGGAGGTGAAGAAGTGCATGGCGCCGGGGTTCGAGGAGAGGGTGAAGGGGAGGGGTGTCGTCCACTCGGGGTGGGTGCAGCAGCAGCACATCCTGCGGCACCGCAGCGTCGGCTGCTACGTCAACCACGCCGGTTTCAGCTCCGTCGTGGAGGGGCTCGTCGCCGGCTGCCGGCTGGTTCTGCTGCCGATGAAGAGCGACCAGTTCTTCAACGCCGCGCTGCTCGCGCGCGAGCTCCGCGTGGGTACCGAGGTTGCGCGGCGAGATGGCGACGGATGGTTTGGCCATGACGCGGTGCGTGACGCGGTGAACGCGGCGGTCGCCGACGCCGGTGGAGGGGACGACGACGAGAGGAAGTGGCGGGAGTTCTTGACGGATGACGCCGTGCAAAGGAGATTCGTGGAGGAGTTCGTCAGGGAGCTGAGAAAACTCGTCCTCTGAAGAAAATCAACTTTGGCCGAGTTTAGTTACAAACTTTTTTTTCAAACTTGTAACTTTCCATCACATCAAAACTTTTCTTACACATAAATTTTCAACTTTTCTGTCACATCGTTCCAATTTTAATGTAAACTAAACACACCTAAAAGTCTGTCGTGAAA]
[+] EMBL AK061200 [CCTGACGGTCCCCGCGCGCCGTCGTCTCCACCACGGGGCGGCGTCGTGCCCGACCGTCGACGACCTCGCCACGGCGCCCGTGGGGTTCCCGCCGTCGTCGTCGCTGGCCACCGTGCCGACCTACCAGGCCGCCGACTTCACCTACGTGTTCACCAGCTTCCACGGCATGCCCAGCGCGTACGACCGCGTCGCCGCCTGCGACAAGGCCAGCGACGTCCTCGTCTTCAAGACCTGCGCCGAGATGGAAGGCCCCTACATCGAATACGTCGCCACGCAATACGACAAGCCCATTCTCGTCACGGGTCCCCTCGTGCCGGAGCCGCCGCATGGCGAGCTGGAGGAGCGGTGGGAGACATGGCTCTCCTCCTTCCCGGACAACGCCGTCGTCTTCGCCTCCTTCGGCAGCGAGACGTTCCTTCCAACCGCCGCCGCGACGGAGCTCCTCCTCGGACTGGAGGCCACCGGCCAGCCGTTCGTCGCCGTGCTCAACTTCCCTAGGAGCGTGGACGCCGAGGCGGAGGTGAAGAAGTGCATGGCGCCGGGGTTCGAGGAGAGGGTGAAGGGGAGGGGTGTCGTCCACTCGGGGTGGGTGCAGCAGCAGCACATCCTGCGGCACCGCAGCGTCGGCTGCTACGTCAACCACGCCGGTTTCAGCTCCGTCGTGGAGGGGCTCGTCGCCGGCTGCCGGCTGGTTCTGCTGCCGATGAAGAGCGACCAGTTCTTCAACGCCGCGCTGCTCGCGCGCGAGCTCCGCGTGGGTACCGAGGTTGCGCGGCGAGATGGCGACGGATGGTTTGGCCATGACGCGGTGCGTGACGCGGTGAACGCGGCGGTCGCCGACGCCGGTGGAGGGGACGACGACGAGAGGAAGTGGCGGGAGTTCTTGACGGATGACGCCGTGCAAAGGAGATTCGTGGAGGAGTTCGTCAGGGAGCTGAGAAAACTCGTCCTCTGAAGAAAATCAACTTTGGCCGAGTTTAGTTACAAACTTTTTTTTCAAACTTGTAACTTTCCATCACATCAAAACTTTTCTTACACATAAATTTTCAACTTTTCTGTCACATCGTTCCAATTTTAATGTAAACTAAACACACCTAAAAGTCTGTCGTGAAA]
[-] EMBL CB655746 [ gGATGGCGACGGATGGTTTGGCCAAGACGCGGGGCGTGACGCGGTGAACGCGGCGGTCGCCGACGCCGGTGGAGGGGACGACGACGAGAGGAAGTGGCGGGAGTTCTTGACGGATGACGCCGTGCAAAGGAGATTCGTGGAGGAGTTCGTCAGGGAGCTGAGAAAACTCGTCCTCTGAAGAAAATCAACTTTGGCCGAGTTTAGTTACAAACTTTTTTTTCAAACTGGTAACTTTCCATCACATCAAAAAGTTTCTTACACATAAATTTTCAGCTTTTCTGTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4136#0 CCGTCTCCGTTCACTGCCCTCGATTGCAATCCACGTTCGTCGTGAGTGACGATGGGAAGC 60
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 GCCGGTGCGGCGCCGGTGGCGACGGCGGCCGGCGGCGGCGGTGGAGACGGAGACCTGCAC 120
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 GTGGTGATGTTCCCGTTCCTGGCGTTCGGCCACATCAGCCCGTTCGCGCAGCTGGCGCGG 180
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 AAGATGGCCGGCGTCGGCGCCGGGGTGCGCGTCACGTTCCTGTCGGCGGCGGCCAACGTG 240
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 CCCCGCGTCGAGGCCATGCTGGGCGGCACCGGCGGCACGTCCACCGTGGCGGCGCTCGAG 300
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 CTGCCGCGCGTGCCGGGGCTCCCCGAGGGCGCGGAGAGCACGGCGGAGGTGTCGGCGGAC 360
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 GGTGCCGAGCTGCTCAAGCTCGCCGTCGACGGCACGCGGCCGCAGGTGGAGGCGCTGCTG 420
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 GCGAGGCTCCACCCGGACGTCGTGCTGTTCGACTTCGCCACGCCGTGGGTCGTCGACGTC 480
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 GCCAGGCCGCTCGGCGTCAAGGCAGCGCTCTTCTCCGTGTTCGCCGCGGTCTCCGGCGCG 540
consensus_4136#1 ------------------------------------------------------------
consensus_4136#0 TACGTCATGGCCCCCGCGCGCCGCCGCCTCCCC---GGGCCGGGGC---GCCCGACCGTC 594
consensus_4136#1 --CCTGACGGTCCCCGCGCGCCGTCGTCTCCACCACGGGGCGGCGTCGTGCCCGACCGTC 58
* * * ** ************ ** **** * *** *** * ***********
consensus_4136#0 GACGACCTCGCGTCGGCGCCGGAGGGGTTCCCGCCGTCGTCGCCGCTCGCCACCGTGCCG 654
consensus_4136#1 GACGACCTCGCCACGGCGCCCGTGGGGTTCCCGCCGTCGTCGTCGCTGGCCACCGTGCCG 118
*********** ******* * ******************* **** ************
consensus_4136#0 GCCTACCAGGCCGCCGACTTCAGCTACGTGTTCGAGAGCTTCCACGGCATGCCGTGCGTG 714
consensus_4136#1 ACCTACCAGGCCGCCGACTTCACCTACGTGTTCACCAGCTTCCACGGCATGCCCAGCGCG 178
********************* ********** ***************** *** *
consensus_4136#0 TACGACCGCGTCGCCGCATGCCACAACGCCTGCGACGCCCTGGTCATCAAGACCTGCGCC 774
consensus_4136#1 TACGACCGCGTCGCCGCCTGCGACAAGGCCAGCGACGTCCTCGTCTTCAAGACCTGCGCC 238
***************** *** **** *** ****** *** *** **************
consensus_4136#0 GAGATGGAAGGCCCCTACATCGACTACATCGCGGCGGAGCACGGCAAGCCGGTGCTCGTG 834
consensus_4136#1 GAGATGGAAGGCCCCTACATCGAATACGTCGCCACGCAATACGACAAGCCCATTCTCGTC 298
*********************** *** **** ** * *** ****** * *****
consensus_4136#0 ACGGGGCCCATCGTGCCGGAGCCGCCGCGAGGCGAGCTGGAGGAGCGGTGGGCGACGTGG 894
consensus_4136#1 ACGGGTCCCCTCGTGCCGGAGCCGCCGCATGGCGAGCTGGAGGAGCGGTGGGAGACATGG 358
***** *** ****************** ********************** *** ***
consensus_4136#0 CTCTCCTCCTTCCCGGACAACTCCGTCGTGTTCGCCTCCTTCGGCAGCGAGACCTTCCTG 954
consensus_4136#1 CTCTCCTCCTTCCCGGACAACGCCGTCGTCTTCGCCTCCTTCGGCAGCGAGACGTTCCTT 418
********************* ******* *********************** *****
consensus_4136#0 CTGCACGCCGCCGCGACGGAGCTCCTCCTCGGACTAGAGGCCACCGCCCTGCCGTTCCTC 1014
consensus_4136#1 CCAACCGCCGCCGCGACGGAGCTCCTCCTCGGACTGGAGGCCACCGGCCAGCCGTTCGTC 478
* ****************************** ********** ** ******* **
consensus_4136#0 GCAGTGCTCAACTTCCCCAAGGGCACGGACGCCGAGGCGGAGCTGAGGAAGCTCACGCCG 1074
consensus_4136#1 GCCGTGCTCAACTTCCCTAGGAGCGTGGACGCCGAGGCGGAGGTGAAGAAGTGCATGGCG 538
** ************** * * ** **************** *** **** ** * **
consensus_4136#0 CCGGGGTTGGAGGAGAGGGTGAAGGGGAGAGGGATCCTGCACACCGGGTGGGTGCAGCAG 1134
consensus_4136#1 CCGGGGTTCGAGGAGAGGGTGAAGGGGAGGGGTGTCGTCCACTCGGGGTGGGTGCAGCAG 598
******** ******************** ** ** * *** * ***************
consensus_4136#0 CAGCACATCCTGCGCCACCGCAGCGTGGGCTGCTTCGTCAACCACTCCGGGCTCAGCTCC 1194
consensus_4136#1 CAGCACATCCTGCGGCACCGCAGCGTCGGCTGCTACGTCAACCACGCCGGTTTCAGCTCC 658
************** *********** ******* ********** **** ********
consensus_4136#0 GTCGTGGAGGGGCTCGTCGCCGGCTGCCGCCTCGTGCTGCTGCCGATGAAGGGCGACCAG 1254
consensus_4136#1 GTCGTGGAGGGGCTCGTCGCCGGCTGCCGGCTGGTTCTGCTGCCGATGAAGAGCGACCAG 718
***************************** ** ** *************** ********
consensus_4136#0 TACCTCAACGCCGCGCTGTTCGCGCGCGAGCTCCGCG--GGCACCGAGGTCGCGCGCCGC 1312
consensus_4136#1 TTCTTCAACGCCGCGCTGCTCGCGCGCGAGCTCCGCGTGGGTACCGAGGTTGCGCGGCGA 778
* * ************** ****************** ** ******** ***** **
consensus_4136#0 GCCCGCGACGGGTGGTTCGGGCGTGAGGACGTGCGCGACGCGCTGGCGGCGGCGTTCGCC 1372
consensus_4136#1 GATGGCGACGGATGGTTTGGCCATGACGCGGTGCGTGACGCGGTGAACGCGGCGGTCGCC 838
* ******* ***** ** * *** * ***** ****** ** ****** *****
consensus_4136#0 GGAGGAGAAGACGGCGGCGGCGAGGAGAAGAAATGGCGGGAGTTCTTGATGGACGACGCC 1432
consensus_4136#1 GACGCCGGTGGAGGGGACGACGACGAGAGGAAGTGGCGGGAGTTCTTGACGGATGACGCC 898
* * * * ** * ** *** **** *** **************** *** ******
consensus_4136#0 GTGCAGAGGAGGTTCGTGCGGGAGTTCGTGGCGGAGCTGAGAAGGCTCAAGGGCTGAAAA 1492
consensus_4136#1 GTGCAAAGGAGATTCGTGGAGGAGTTCGTCAGGGAGCTGAGAAAACTCGTCCTCTGAAGA 958
***** ***** ****** ********* *********** *** ***** *
consensus_4136#0 CGG--AACGTCACGCGTCGTTAATCAGATCGACAGCTGTCACAACTCTGAAGAAAATCGG 1550
consensus_4136#1 AAATCAACTTTGGCCGAGTTTAGTTACA--AACTTTTTTTTCAAACTTGT----AACTTT 1012
*** * ** *** * * * ** * * *** ** **
consensus_4136#0 ACTCTGTTCTGAAGACTGTGAAGAGAAGGAATCAACGGCTGTGATTGCTTGATACTGCAT 1610
consensus_4136#1 CCATCACATCAAAACTTTTCTTACACATAAATTTTCAACT--------TTTCTGTCACAT 1064
* ** * * * *** * ** ** * ***
consensus_4136#0 CGCGGTTCTCGCTCTAGGGAGTACTACATCCGTCATAAAATAAAATAAGTGCAGTTTTGC 1670
consensus_4136#1 CG---TTCCAATTTTAATGTAAACTAAACACACCTAAAAGTCTGTC--GTGAAA------ 1113
** *** * ** * **** * * * *** * *** *
consensus_4136#0 ACTGGTTATATCCAACGTCTGACTTAACGTCTTATTTATAAAAATTATTTT 1721
consensus_4136#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||