These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence [GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGACGGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGATGATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCTGATTCTGTCATGCAAAAA] [+] EMBL AU166785 [GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGACGGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGATGATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCTGATTCTGTCATGCAAAAA] [+] EMBL AK105452 [ GGATGATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCCAAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGTCTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGTTGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTTGTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATC ] consensusID : consensus_4138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [ACGAGATTTTACGTCTACATGCACAAAGGCAAAACACAAAAAAACGGCTTAACATCAGAATGTTCAAATGTTGCGGTGTGTATTTTATTGGAAAATCTGAATTCTGTCATGCATTCAAGTCTGAATCCTTGTTAAAAAAAATGCATATTACCTTCCCCCTTCTCTCCCCCCCCTATCCCCTTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCACTCCCCTCCTCTTTACCTCTTATTGCTTCCTCTTTACTATATCGCTCTCCCTCCAATCTCTTATTTCTCTCCCCCGGGGGGGGGGGGGGCCTCTGGGTACCCCCTCTTCTTCCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTTTTCGCTAACTCCCTCCCCGGGGGGGTCCCCCCTTTTTTTAT] [+] EMBL AA754151 [ACGAGATTTTACGTCTACATGCACAAAGGCAAAACACAAAAAAACGGCTTAACATCAGAATGTTCAAATGTTGCGGTGTGTATTTTATTGGAAAATCTGAATTCTGTCATGCATTCAAGTCTGAATCCTTGTTAAAAAAAATGCATATTACCTTCCCCCTTCTCTCCCCCCCCTATCCCCTTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCACTCCCCTCCTCTTTACCTCTTATTGCTTCCTCTTTACTATATCGCTCTCCCTCCAATCTCTTATTTCTCTCCCCCGGGGGGGGGGGGGGCCTCTGGGTACCCCCTCTTCTTCCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTTTTCGCTAACTCCCTCCCCGGGGGGGTCCCCCCTTTTTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4138#0 GGCGATGAAGGGGGTGAGGATGAAGATGATGATGATGATGACCCTGAGGCAAATGGTGAC 60 consensus_4138#1 -------------------ACGA-GATTTTACGTCTACATGCACAAAGGCAAAACACAAA 40 * ** *** * * * * ******* * consensus_4138#0 GGAGGCAGCGATGATGAAGATGATGATGACGACGATGGTGGTGACGAAGATGGTGAGGAT 120 consensus_4138#1 AAAACGGCTTAACATCAGAATGTTCA-AATGTTG-CGGTGTGTATTTTATTGGAAAATCT 98 * * ** * *** * * * * * **** * *** * * consensus_4138#0 GATGATGATGAGGATGATGATGATGAGGAAGATGATGATGACGAGGACCAGCCGCCTTCC 180 consensus_4138#1 GA--ATTCTGTCATGCATTCAAGTCTGAATCCTTGTTAAAAAAAATGCATATTACCTTCC 156 ** ** ** ** * * * * * * * * * ****** consensus_4138#0 AAGAAGAAGAAATGAGCTAGCCTCCTTCATCCTGCATCTGCCTCCTCAACTTGTTTCAGT 240 consensus_4138#1 CCCTTCTCTCCCCCCCCTATCCCCTTCTTCCCTCCTTACCGGTGGTCTGCTTTTCTTCA- 215 *** ** * * *** * * * ** *** * * consensus_4138#0 CTGTTGTGCTGTTTAGATGATGGAACAGGTTATGGGACCTATGTAGCTTATGGTTTGGGT 300 consensus_4138#1 CTCCCCTCCTCTTTACCTCTTATTGCTTCCTCTTTA--CTATATCGCTC-TCCCTCCAAT 272 ** * ** **** * * * * * **** * *** * * * consensus_4138#0 TGTTTGGGTCTCTCATAGGAGTAGGAAAACATTTGACATCTGATGTTAAGCCGTTCTCTT 360 consensus_4138#1 CTCTTATTTCTCTCCCCCGGGGGGGGGGGG----GGCCTCTG--GGTACCCCCTCTTCTT 326 ** ****** * * ** * * **** * ** ** * **** consensus_4138#0 GTGTTTTGCCTTTGTGCATGTAGACGTAAAATGCTGCGGTGTGTTATTTATTGGAGATCT 420 consensus_4138#1 CCCCCCCTCTTAATAGTATAGTCTCTTTCCTTTTTTCGCTAACTCCCTCCCCGGGGGGGT 386 * * * ** * * * * ** * * * ** * * consensus_4138#0 GATTCTGTCATGCAAAAA 438 consensus_4138#1 CCCCCCTTTTTTTAT--- 401 * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||