These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACAAAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAAAGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC] [+] EMBL CA760096 [TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACAAAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAAAGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC] consensusID : consensus_414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAACGCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGGAGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGCTTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAACCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACGAGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAAACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGAGAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTTGGTTCTTGGCTCA] [+] EMBL CB096787 [AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAACGCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGGAGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGCTTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAACCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACGAGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAAACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGAGAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTTGGTTCTTGGCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_414#0 ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTT 38 consensus_414#1 AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAAC 60 * * * * ** * * consensus_414#0 ACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATC 98 consensus_414#1 GCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGG 120 * ** ** * ** * * * * * * * ** ** consensus_414#0 AATAGTTGAGCCAAGTAGTACAAAAGTTACAAA-TACTCCTAT-CATCTACAGACAGATC 156 consensus_414#1 AGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATC 180 * * * *** ** * ** ** ** ** ***** ****** consensus_414#0 TCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAAT 216 consensus_414#1 TGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGC 240 * ******* ** ** * * ** * ** ** * * * consensus_414#0 GGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTT 276 consensus_414#1 TTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAA---AGTTAGAA----- 292 * **** ** ** * * *** * * * ** *** consensus_414#0 GCTAGCATATTATT-TTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCAT 335 consensus_414#1 ACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAAC 352 * * **** * * ** * * * * * ** *** * *** * * consensus_414#0 GAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACC 395 consensus_414#1 TTCAATAACCTTCACAAAACAAGGGAG---GAAGAAAGCTTGAAAGGGCAAGAGGTAG-- 407 ** ** * * *** * ** ** *** *** ** * * ** consensus_414#0 CATTAGCCTATACTAGCTA-AACAAAAGAGGGGATATTAATAATATATTATACCAGTTGC 454 consensus_414#1 -AGCAACCAACACGAGCTATGGCTAAGGATGGGG-----AGAGTGGATT-------TTAA 454 * * ** * ** ***** * ** ** *** * * * *** ** consensus_414#0 TCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGG 514 consensus_414#1 TCAACTT--TTGGGTCCGCAGAAGGAAAACAGAGGAGCC--AAAGGAGA---GGAAAAAA 507 *** ** ** * * * *** * *** ** * **** *** * ** consensus_414#0 TACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAA 574 consensus_414#1 TACGTGCTTGATAGAATTGTGGATTCA---------AAGAGAGAAGAGGGGTGGTGTCCA 558 *** * * ** **** ** *** * **** * consensus_414#0 GAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCA 634 consensus_414#1 GATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGA 618 ** * ** * * * * * * * *** ** ** *** * * consensus_414#0 GA-GGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATC 693 consensus_414#1 GACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTT 678 ** * ** *** * ** ** ** * * * * **** * consensus_414#0 AAC---------- 696 consensus_414#1 GGTTCTTGGCTCA 691 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||