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Oryza sativa
cluster # 414 cluster # 414       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_414#0 length = 696 sequences # 1  
consensus_414#1 length = 691 sequences # 1  

consensusID : consensus_414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACAAAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAAAGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC]

[+] EMBL CA760096             [TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACAAAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAAAGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC]


>consensus_414#0 TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCT ATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACA AAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTT ATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTAC TATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAA AACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGG CACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAA AGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGT GATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTC ACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTC ACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTAT GGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC



consensusID : consensus_414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAACGCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGGAGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGCTTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAACCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACGAGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAAACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGAGAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTTGGTTCTTGGCTCA]

[+] EMBL CB096787             [AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAACGCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGGAGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGCTTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAACCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACGAGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAAACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGAGAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTTGGTTCTTGGCTCA]


>consensus_414#1 AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAAC GCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGG AGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATC TGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGC TTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAAT ATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAA CCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACG AGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAA ACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGA GAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGA CTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAG TCTTTATGGCATTTATTTGGTTCTTGGCTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_414#0      ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTT 38
consensus_414#1      AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAAC 60
                                           *      * * *           ** *       *   

consensus_414#0      ACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATC 98
consensus_414#1      GCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGG 120
                      * **  ** *    **   *   *    *      *  *  *   * **     **   

consensus_414#0      AATAGTTGAGCCAAGTAGTACAAAAGTTACAAA-TACTCCTAT-CATCTACAGACAGATC 156
consensus_414#1      AGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATC 180
                     *   *  * ***  **  *       **  **  ** **     *****     ******

consensus_414#0      TCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAAT 216
consensus_414#1      TGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGC 240
                     *   ******* ** **     *  * **  *          ** **  *  *   *   

consensus_414#0      GGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTT 276
consensus_414#1      TTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAA---AGTTAGAA----- 292
                       *    ****  ** **  *  * *** *  * *      **     ***         

consensus_414#0      GCTAGCATATTATT-TTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCAT 335
consensus_414#1      ACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAAC 352
                      * *  ****  *  * ** * *   * * * **    ***  *    *** *     * 

consensus_414#0      GAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACC 395
consensus_414#1      TTCAATAACCTTCACAAAACAAGGGAG---GAAGAAAGCTTGAAAGGGCAAGAGGTAG-- 407
                         ** ** *  * ***  *  **      ** ***  *** **     * *  **   

consensus_414#0      CATTAGCCTATACTAGCTA-AACAAAAGAGGGGATATTAATAATATATTATACCAGTTGC 454
consensus_414#1      -AGCAACCAACACGAGCTATGGCTAAGGATGGGG-----AGAGTGGATT-------TTAA 454
                      *  * ** * ** *****   * ** ** ***      * * *  ***       **  

consensus_414#0      TCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGG 514
consensus_414#1      TCAACTT--TTGGGTCCGCAGAAGGAAAACAGAGGAGCC--AAAGGAGA---GGAAAAAA 507
                     ***  **  **  * *    * ***  * *** **   *  **** ***   *  **   

consensus_414#0      TACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAA 574
consensus_414#1      TACGTGCTTGATAGAATTGTGGATTCA---------AAGAGAGAAGAGGGGTGGTGTCCA 558
                     *** *       *   **     ****         **         *** *  **** *

consensus_414#0      GAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCA 634
consensus_414#1      GATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGA 618
                     **      * ** *     * * *  *  *  * ***   **   ** *** *      *

consensus_414#0      GA-GGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATC 693
consensus_414#1      GACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTT 678
                     **    * ** *** *    ** **       ** * *        *  *   **** * 

consensus_414#0      AAC---------- 696
consensus_414#1      GGTTCTTGGCTCA 691
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)