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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACAAAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAAAGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC]
[+] EMBL CA760096 [TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTTACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATCAATAGTTGAGCCAAGTAGTACAAAAGTTACAAATACTCCTATCATCTACAGACAGATCTCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAATGGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTTGCTAGCATATTATTTTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCATGAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACCCATTAGCCTATACTAGCTAAACAAAAGAGGGGATATTAATAATATATTATACCAGTTGCTCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAAGAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCAGAGGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATCAAC]
consensusID : consensus_414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAACGCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGGAGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGCTTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAACCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACGAGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAAACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGAGAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTTGGTTCTTGGCTCA]
[+] EMBL CB096787 [AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAACGCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGGAGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATCTGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGCTTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAAAGTTAGAAACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAACTTCAATAACCTTCACAAAACAAGGGAGGAAGAAAGCTTGAAAGGGCAAGAGGTAGAGCAACCAACACGAGCTATGGCTAAGGATGGGGAGAGTGGATTTTAATCAACTTTTGGGTCCGCAGAAGGAAAACAGAGGAGCCAAAGGAGAGGAAAAAATACGTGCTTGATAGAATTGTGGATTCAAAGAGAGAAGAGGGGTGGTGTCCAGATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGAGACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTTGGTTCTTGGCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_414#0 ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTAGTTAAAACATTT 38
consensus_414#1 AGGGACGCACGGCGTCCAGCCGTCGACGGTGTCTCACACCAGGAGTTCGCCGTGGGAAAC 60
* * * * ** * *
consensus_414#0 ACTACATTTGAGGATATATGCTATATAGTCTATGCTCCATATTACATAATCATGGCAATC 98
consensus_414#1 GCAACTGTTCAATGGATGGTCCGCAAGACCCGACTACAGTTCTTTCTCATGGCATCANGG 120
* ** ** * ** * * * * * * * ** **
consensus_414#0 AATAGTTGAGCCAAGTAGTACAAAAGTTACAAA-TACTCCTAT-CATCTACAGACAGATC 156
consensus_414#1 AGCGGGGGGGCCTTGTCCTTTTTCCATTGGAAGGTAATCAGGGGCATCTTAGAGCAGATC 180
* * * *** ** * ** ** ** ** ***** ******
consensus_414#0 TCGCAATGGTATCTATCAAATTTTATCCCTATGAGTTAATTTATAAAAATAGCATAGAAT 216
consensus_414#1 TGAGAATGGTACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCCCTAGGTGC 240
* ******* ** ** * * ** * ** ** * * *
consensus_414#0 GGTCAAAAAGAGACCAACGCTTACTATAAATGCGACAATATAAGCTTGGTTTATGTTTTT 276
consensus_414#1 TTTTGTCAAGAATCCTACAATAGCAATACACCCAAAGGGCCAAA---AGTTAGAA----- 292
* **** ** ** * * *** * * * ** ***
consensus_414#0 GCTAGCATATTATT-TTTATAAAAAAACAAATATTGGGTAAATAGTTGACATCTTTTCAT 335
consensus_414#1 ACCAAAATATAGTAATCTAAAGAGTGAAAGAAATCAAATAAGCAAGATACACCCGACAAC 352
* * **** * * ** * * * * * ** *** * *** * *
consensus_414#0 GAATATGACATGTATAAATTATAGGCACTCAAACAAATATTGTAAAAATGACATATAACC 395
consensus_414#1 TTCAATAACCTTCACAAAACAAGGGAG---GAAGAAAGCTTGAAAGGGCAAGAGGTAG-- 407
** ** * * *** * ** ** *** *** ** * * **
consensus_414#0 CATTAGCCTATACTAGCTA-AACAAAAGAGGGGATATTAATAATATATTATACCAGTTGC 454
consensus_414#1 -AGCAACCAACACGAGCTATGGCTAAGGATGGGG-----AGAGTGGATT-------TTAA 454
* * ** * ** ***** * ** ** *** * * * *** **
consensus_414#0 TCATGTTGTTTACGCCTCTTGTAGGTGATCAGGGGCATCTTAAAGCAGATCTGAGAATGG 514
consensus_414#1 TCAACTT--TTGGGTCCGCAGAAGGAAAACAGAGGAGCC--AAAGGAGA---GGAAAAAA 507
*** ** ** * * * *** * *** ** * **** *** * **
consensus_414#0 TACCTCTCCTGCATGTTTCCATTTTCACCTGCCATCAACTTCTCTAGGGGCTTTTGTCAA 574
consensus_414#1 TACGTGCTTGATAGAATTGTGGATTCA---------AAGAGAGAAGAGGGGTGGTGTCCA 558
*** * * ** **** ** *** * **** *
consensus_414#0 GAATCCCGACAACTTCAATAGCCTTCACAAAACAAGGGAGGAAGAAAGCTTGANAGGGCA 634
consensus_414#1 GATGTAAAAAAATTATGGCAACTTAAAGTATTCCAGGCTTGACTCAACCTTCAACTTCGA 618
** * ** * * * * * * * *** ** ** *** * *
consensus_414#0 GA-GGTANAGCAACCAACACAAGCTATGGCTAAGGATGGGGAGAAATGGGATTTTTAATC 693
consensus_414#1 GACAAAATAGAAACAACTGGAAACTTAAATACAGAACGCTAGTCTTTATGGCATTTATTT 678
** * ** *** * ** ** ** * * * * **** *
consensus_414#0 AAC---------- 696
consensus_414#1 GGTTCTTGGCTCA 691
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||