These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1032 fasta sequence [AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGGAGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTCTGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGGTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGG-GCGCTCGCCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCTGCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGCAGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACTACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCGACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCGCACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCATTTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAAATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAAATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGGAATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTCTTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAACAACTTCATCACA] [+] EMBL AK061252 [AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGGAGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTCTGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGGTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGG GCGCTCGCCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCTGCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGCAGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACTACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCGACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCGCACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCATTTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAAATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAAATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGGAATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTCTTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAACAACTTCATCACA] [+] EMBL AU077531 [ GGGAGGAAGGCGGCGGCGGGGTGGAGCTGGTGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGANGAGCGCACGGCGCGGNGCGCTCGCCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCTGCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGCA CTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACTACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCGACCCTCCCTACCTGAGTAAAGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCGC ] consensusID : consensus_4146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [ATCCCGANGATAGACTTGGCGGTTGGGAGCNAAATGATGGCGCTACCGTTTAGCTGTTTTAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGNTTTCACAGTTCCTGCATTTTTGTTTGTAGGNCACTGAAGCAATAGCNTCAGTAGGAATCTCGGCAATGTTTTANTGAACCCCTGAATNTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACNCAATGTACCCCTTTTAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU077532 [ATCCCGANGATAGACTTGGCGGTTGGGAGCNAAATGATGGCGCTACCGTTTAGCTGTTTTAAATGTTCAAGTCTTGATGCCTAGGGATGGATTCATGNTTTCACAGTTCCTGCATTTTTGTTTGTAGGNCACTGAAGCAATAGCNTCAGTAGGAATCTCGGCAATGTTTTANTGAACCCCTGAATNTGTCCGTTGTGATGTGTTTGTTGGATTAAACTTTACNCAATGTACCCCTTTTAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4146#0 AGTGGGAGACAACAATGGCGAGCGGTGTGGAGGAGAGAGTGAGGGGCGAGGTGAGAGGGG 60 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 AGGAGGATGACCGGCCGCAGCTGAGCGCGGCGGCGGCGGAGGCGCTGCGGGAGTTTCTTC 120 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 TGGAACAGGGGCGGGACGGTGGGGAGGAAGGGGAGGAAGGCGGCGGCGGGGTGGAGCTGG 180 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 TGGCGGAGGACTGGCGGCTGAGCCAGTTCTGGTACGACGAGCGCACGGCGCGGGCGCTCG 240 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 CCGAGGAGGTCGCCCGCCTCGTCTCCCTCTCCGGCCCGGCCTCCTCCGCAGCGGTGGCCT 300 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 GCGTCGCGTGCCCGACGCTCTACACCTACCTCAAGACGAGCAGCCCTGATGTGACCGCGC 360 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 AGCTGCTGGAGTACGACGTGCGGTTCGGGCAGTACGGCGGCGACTTCACCTTCTACGACT 420 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 ACAACCAGCCGGAGGAGCTTCCGGCGGCGATGAAGCACGCCTACCGGATCGTCGTCGCCG 480 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 ACCCTCCCTACCTGAGTAAGGAGTGCTTGGAGAAGGTTGCCAAGACGGTATCTTTCCTCG 540 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 CACATCCTGAAGGCTCATTCCTGCTGTTACTGACAGGGGAAGTTCAGAGGGACAGGGCAT 600 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 TTGAGCTCCTAAATGTGCGTCCCTGTGGATTCAAGCCTCAGCATTCAAACAAGCTAGGAA 660 consensus_4146#1 ------------------------------------------------------------ consensus_4146#0 ATGAATTCCGCTTGTTCACAAATTATGATCCCGAAGATAGACTTGGCGGTTGGGAGCAAA 720 consensus_4146#1 ---------------------------ATCCCGANGATAGACTTGGCGGTTGGGAGCNAA 33 ******* ********************** ** consensus_4146#0 ATGATGGCGCTACCGTTTAGCTGTTTCAAATGTTCAAGTCTTGATGCCTAGGGATGGATT 780 consensus_4146#1 ATGATGGCGCTACCGTTTAGCTGTTTTAAATGTTCAAGTCTTGATGCCTAGGGATGGATT 93 ************************** ********************************* consensus_4146#0 CATGCTTTCACAGTTCCTGCATTTTTGTTTGTAGGTCACTGAAGCAATAGCATCAGTAGG 840 consensus_4146#1 CATGNTTTCACAGTTCCTGCATTTTTGTTTGTAGGNCACTGAAGCAATAGCNTCAGTAGG 153 **** ****************************** *************** ******** consensus_4146#0 AATCTCGGCAATGTTTTACTGAATCCCTGAATCTGTCCGTTGTGATGTGTTTGTTGGATT 900 consensus_4146#1 AATCTCGGCAATGTTTTANTGAACCCCTGAATNTGTCCGTTGTGATGTGTTTGTTGGATT 213 ****************** **** ******** *************************** consensus_4146#0 AAACTTTACACAATGTACCCCTTTTAGTTTCATGATTGTGCTTAAAGGATTTGTGGTTTC 960 consensus_4146#1 AAACTTTACNCAATGTACCCCTTTTAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 273 ********* ********************** * *** * consensus_4146#0 TTGCAATGTTCGGCCTTCGAAAGCAGTGATTTGGGGCATGTAAGCCGTGTTTAGGGTAAC 1020 consensus_4146#1 AAAAAAAAA--------------------------------------------------- 282 ** consensus_4146#0 AACTTCATCACA 1032 consensus_4146#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||