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Oryza sativa
cluster # 4148 cluster # 4148       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4148#0 length = 2403 sequences # 3  

consensusID : consensus_4148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2403
fasta sequence
                              [CTCCTGCAATCTGCAAGACTGAAGCTAAGCAGCTTTAAATCCTCCTGCGTCATTTAACCCCCTCTCTGCCTCTCTGAGCTCTGAGCTGCTCAGCTACAGCTCCCTAGCTGTTCTGTTCGATTAATTCAGCTTCGCTTTGCTTGGATTAATTTGTAGGTGACTAACTCGATCACAGCTCAGGTGATTGGCAGTTTGATCACAAGGCAGGAAGGAAGTAGAAGTAGATTGCTGTAGCACACGCTCACCTACCAAGCTTCTACACTCGCAGCCAAGCTTTGATCGTTTGCTTGCTTTGCATTGCTTGGGCTTTGTGGGCAAGAACGTGTCTATCTTCTTCTTGTTCGTCTCGTCAGGCGGCCATGGGGATGAGTTCATGCGTGAACCTATCCCGTGTCGCCGCCGCCGCCGCAGGGAGACGGCCGGGATTTGCCGGTGAGCTGGGAGGTCGCCGTGGTCATGGCAGAAGCGTGCTTCCGGTTGTTGCTGCACTGCCGGTGAGGAGGAAGGGAAGCGGTTGTGGCGTGGCGTGCTGCGTCTCCTCCTCGTCTTCCTCCTCCGTGCACGGCAAGAACTCGGCGGCGGCGGCGGAGGGTCACGCCGGCGGCATTGGGATCGCGGAGTTCCTCGGCGGCAAGAACTTCCTCATCACCGGCGGAACCGGGTTCCTGGCAAAAGTTCTCATCGAGAAGATATTGCGGACGAATCCCGACGTTGGCAAGATCTACGTGCTGATCAAGGCGAAGGACGGTGACGCAGCACTGAAAAGATTGCACAACGAGGTTGTGGACACAGAATTGTTCAGTCGTTTGCAGGAAATCCATGGCAAGGATTACCACAGCTTCGCGGCAAGAAAGCTGGTGCCTGTAGTCGGAGATGTCAGAGAAGCCAACGTTGGCATCGCCCCTGAGCTTGCCGGCGTGATCGCCGACGAGGTCGACATCATCGTCAACTCAGCAGCAAACACCACTTTCGACGAGAGGTACGATGTTGCAATGGACATCAACACCGTAGGGCCATTCAGGATAATGAGCTTCGCGCAGCGGTTTCGGAGGCTGAAGCTGTTCTTGCAAGTGTCAACAGCATATGTGAACGGACAGAGGCAAGGTGTGGTGCTAGAGAAGCCATTTCGCTTGGGGGACACCATAGCCAAGGAGTTAGGATCTCCAGATTCTTCACAACACAAGAACACCATGCTTGACATCGAGGCAGAGATCAAGCTGGCTTTTGACCACAGGAGACACGGTGATGATTCAGCCTCTTTCTCTGAAGAAATGAAAGAGTTAGGATTAGAGAGGGCAAAACTCCATGGGTGGCAAGATACATATGTGTTCACCAAGGCCATGGGAGAGATGGTGATCAACTCCATGCGAGGAGATATACCGGTTGTCACCATCAGGCCAAGCGTCATCGAGAGCACCTGGAGGGATCCCTTCCCCGGTTGGATGGAAGGGAACAGGATGATGGATCCTGTTGTGCTGTACTACGGCAAAGGCCAGCTGAGCGGGTTCCTCGCTGACCCGGAGGGTGTTCTTGACGTGGTTCCGGCGGACATGGTGGTGAACGCAACGCTGGCGTCCATGGCGAAGCACGGGCGCGGCGGCGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGATGCACGTGTACCACGTGG-CGTCGTCGACGGTGAACCCGCTGGCGTTCGGCGACCTGAGCCGGTTCCTCTTCCAGCACTTCACGGGGTCGCCGTACAGCGACGCGGCGGGGCGGCCCATCCACGTGCCGCCGATGCGGCT-GTTCGACACCATGGAGCAGTTCGCCAGCTACGTCGAGACCGACGCGCTGCTGCGCGCCGGCCGCCTCGCCGGCGCCGGCGCCGG-CGCCGGAGACGAGAGGGTGTCGCAGCGGCTGCGCGAGCTCTGCGCCAAGTCCGTCGAGCAGACCATCTACCTCGGCAGCATCTACCAGCCCTACACCTTCTACGGCGGCAGGTTCGACAATGGGAACACGGAGGCGCTGATCGGGGAGATGTCGGAGGAGGAGAAGGCGCGGTTCCACTTCGACGTGAGGAGCATCGAGTGGACGGACTACATCACCAACGTGCACATCCCGGGGCTCAGGAAGCACGTCATGAAGGGGAGGGGCGTCGGCGGCGGCAGCGGCGCGTCGTCGTCATCGAACGCCTCGCTGCTCGCCGGCGCCTCCGTTTGAATGGCCAGGCCGGCGCCGGAGAAGAGGAGGATGCATGCGCGGCGTGTACACTAGGCTAGATTGTTGTTAACTTGTTCTGCCGTGGCAGTCTGACAGATGATCTTTGTGCTGCAGTAATTAAGGTTGATAGTATGTTATCTCTATCACTATGTAATCAGAGCAAAAATTGGCAATCAATTTAACAGAATTTACAAAAGATGCACATAATTCAGAAAAA]

[+] EMBL AK121254             [CTCCTGCAATCTGCAAGACTGAAGCTAAGCAGCTTTAAATCCTCCTGCGTCATTTAACCCCCTCTCTGCCTCTCTGAGCTCTGAGCTGCTCAGCTACAGCTCCCTAGCTGTTCTGTTCGATTAATTCAGCTTCGCTTTGCTTGGATTAATTTGTAGGTGACTAACTCGATCACAGCTCAGGTGATTGGCAGTTTGATCACAAGGCAGGAAGGAAGTAGAAGTAGATTGCTGTAGCACACGCTCACCTACCAAGCTTCTACACTCGCAGCCAAGCTTTGATCGTTTGCTTGCTTTGCATTGCTTGGGCTTTGTGGGCAAGAACGTGTCTATCTTCTTCTTGTTCGTCTCGTCAGGCGGCCATGGGGATGAGTTCATGCGTGAACCTATCCCGTGTCGCCGCCGCCGCCGCAGGGAGACGGCCGGGATTTGCCGGTGAGCTGGGAGGTCGCCGTGGTCATGGCAGAAGCGTGCTTCCGGTTGTTGCTGCACTGCCGGTGAGGAGGAAGGGAAGCGGTTGTGGCGTGGCGTGCTGCGTCTCCTCCTCGTCTTCCTCCTCCGTGCACGGCAAGAACTCGGCGGCGGCGGCGGAGGGTCACGCCGGCGGCATTGGGATCGCGGAGTTCCTCGGCGGCAAGAACTTCCTCATCACCGGCGGAACCGGGTTCCTGGCAAAAGTTCTCATCGAGAAGATATTGCGGACGAATCCCGACGTTGGCAAGATCTACGTGCTGATCAAGGCGAAGGACGGTGACGCAGCACTGAAAAGATTGCACAACGAGGTTGTGGACACAGAATTGTTCAGTCGTTTGCAGGAAATCCATGGCAAGGATTACCACAGCTTCGCGGCAAGAAAGCTGGTGCCTGTAGTCGGAGATGTCAGAGAAGCCAACGTTGGCATCGCCCCTGAGCTTGCCGGCGTGATCGCCGACGAGGTCGACATCATCGTCAACTCAGCAGCAAACACCACTTTCGACGAGAGGTACGATGTTGCAATGGACATCAACACCGTAGGGCCATTCAGGATAATGAGCTTCGCGCAGCGGTTTCGGAGGCTGAAGCTGTTCTTGCAAGTGTCAACAGCATATGTGAACGGACAGAGGCAAGGTGTGGTGCTAGAGAAGCCATTTCGCTTGGGGGACACCATAGCCAAGGAGTTAGGATCTCCAGATTCTTCACAACACAAGAACACCATGCTTGACATCGAGGCAGAGATCAAGCTGGCTTTTGACCACAGGAGACACGGTGATGATTCAGCCTCTTTCTCTGAAGAAATGAAAGAGTTAGGATTAGAGAGGGCAAAACTCCATGGGTGGCAAGATACATATGTGTTCACCAAGGCCATGGGAGAGATGGTGATCAACTCCATGCGAGGAGATATACCGGTTGTCACCATCAGGCCAAGCGTCATCGAGAGCACCTGGAGGGATCCCTTCCCCGGTTGGATGGAAGGGAACAGGATGATGGATCCTGTTGTGCTGTACTACGGCAAAGGCCAGCTGAGCGGGTTCCTCGCTGACCCGGAGGGTGTTCTTGACGTGGTTCCGGCGGACATGGTGGTGAACGCAACGCTGGCGTCCATGGCGAAGCACGGGCGCGGCGGCGCGGCGGCGGCGGCGGCGGCGGCGGAGGGGATGCACGTGTACCACGTGG CGTCGTCGACGGTGAACCCGCTGGCGTTCGGCGACCTGAGCCGGTTCCTCTTCCAGCACTTCACGGGGTCGCCGTACAGCGACGCGGCGGGGCGGCCCATCCACGTGCCGCCGATGCGGCT GTTCGACACCATGGAGCAGTTCGCCAGCTACGTCGAGACCGACGCGCTGCTGCGCGCCGGCCGCCTCGCCGGCGCCGGCGCCGG CGCCGGAGACGAGAGGGTGTCGCAGCGGCTGCGCGAGCTCTGCGCCAAGTCCGTCGAGCAGACCATCTACCTCGGCAGCATCTACCAGCCCTACACCTTCTACGGCGGCAGGTTCGACAATGGGAACACGGAGGCGCTGATCGGGGAGATGTCGGAGGAGGAGAAGGCGCGGTTCCACTTCGACGTGAGGAGCATCGAGTGGACGGACTACATCACCAACGTGCACATCCCGGGGCTCAGGAAGCACGTCATGAAGGGGAGGGGCGTCGGCGGCGGCAGCGGCGCGTCGTCGTCATCGAACGCCTCGCTGCTCGCCGGCGCCTCCGTTTGAATGGCCAGGCCGGCGCCGGAGAAGAGGAGGATGCATGCGCGGCGTGTACACTAGGCTAGATTGTTGTTAACTTGTTCTGCCGTGGCAGTCTGACAGATGATCTTTGTGCTGCAGTAATTAAGGTTGATAGTA                                                                                     ]
[+] EMBL C73711               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cctcttccCGGC GCGGCGGCGGCGGAGGGGATGCACGTGTACCACGTGGCCGTCGTCGACGGTGAACCCGCTGGCGTTCGGCGACCTGAGCCGGTTCCTCTTCCAGCACTTCACGGGGTCGCCGTACAGCGACGCGGCGGGGCGGCCCATCCACGTGCCGCCGATGC GCTNGTTCGACACCATGGAGCAGTTCGCCAGCTACGTCGAGACCGACGCGNTGCTGCGGCCCGGCCCGCTCGCCGGCGNCGGCGCCGGCCGNAAGA ACGAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C99490               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCGGCAGGTTCGACAATGGGAACACGGAGGCGCTGATCGGGGAGATGTCGGAGGAGGAGAAGGCGCGGTTCCACTTCGACGTGAGGAGCATCGAGTGGACGGACTACATCACCAACGTGCACATCCCGGGGCTCAGGAAGCACGTCATGAAGGGGAGGGGCGTCGGCGGCGGCAGCGGCGCGTCGTCGTCATCGAACGCCTCGCTGCTCGCCGGCGCCTCCGTTTGAATGGCCAGGCCGGCGCCGGAGAAGAGGAGGATGCATGCGCGGCGTGTACACTAGGCTAGATTGTTGTTAACTTGTTCTGCCGTGGCAGTCTGACAGATGATCTTTGTGCTGCAGTAATTAAGGTTGATAGTATGTTATCTCTATCACTATGTAATCAGAGCAAAAATTGGCAATCAATTTAACAGAATTTACAAAAGATGCACATAATTCAGAAAAA]


>consensus_4148#0 CTCCTGCAATCTGCAAGACTGAAGCTAAGCAGCTTTAAATCCTCCTGCGTCATTTAACCC CCTCTCTGCCTCTCTGAGCTCTGAGCTGCTCAGCTACAGCTCCCTAGCTGTTCTGTTCGA TTAATTCAGCTTCGCTTTGCTTGGATTAATTTGTAGGTGACTAACTCGATCACAGCTCAG GTGATTGGCAGTTTGATCACAAGGCAGGAAGGAAGTAGAAGTAGATTGCTGTAGCACACG CTCACCTACCAAGCTTCTACACTCGCAGCCAAGCTTTGATCGTTTGCTTGCTTTGCATTG CTTGGGCTTTGTGGGCAAGAACGTGTCTATCTTCTTCTTGTTCGTCTCGTCAGGCGGCCA TGGGGATGAGTTCATGCGTGAACCTATCCCGTGTCGCCGCCGCCGCCGCAGGGAGACGGC CGGGATTTGCCGGTGAGCTGGGAGGTCGCCGTGGTCATGGCAGAAGCGTGCTTCCGGTTG TTGCTGCACTGCCGGTGAGGAGGAAGGGAAGCGGTTGTGGCGTGGCGTGCTGCGTCTCCT CCTCGTCTTCCTCCTCCGTGCACGGCAAGAACTCGGCGGCGGCGGCGGAGGGTCACGCCG GCGGCATTGGGATCGCGGAGTTCCTCGGCGGCAAGAACTTCCTCATCACCGGCGGAACCG GGTTCCTGGCAAAAGTTCTCATCGAGAAGATATTGCGGACGAATCCCGACGTTGGCAAGA TCTACGTGCTGATCAAGGCGAAGGACGGTGACGCAGCACTGAAAAGATTGCACAACGAGG TTGTGGACACAGAATTGTTCAGTCGTTTGCAGGAAATCCATGGCAAGGATTACCACAGCT TCGCGGCAAGAAAGCTGGTGCCTGTAGTCGGAGATGTCAGAGAAGCCAACGTTGGCATCG CCCCTGAGCTTGCCGGCGTGATCGCCGACGAGGTCGACATCATCGTCAACTCAGCAGCAA ACACCACTTTCGACGAGAGGTACGATGTTGCAATGGACATCAACACCGTAGGGCCATTCA GGATAATGAGCTTCGCGCAGCGGTTTCGGAGGCTGAAGCTGTTCTTGCAAGTGTCAACAG CATATGTGAACGGACAGAGGCAAGGTGTGGTGCTAGAGAAGCCATTTCGCTTGGGGGACA CCATAGCCAAGGAGTTAGGATCTCCAGATTCTTCACAACACAAGAACACCATGCTTGACA TCGAGGCAGAGATCAAGCTGGCTTTTGACCACAGGAGACACGGTGATGATTCAGCCTCTT TCTCTGAAGAAATGAAAGAGTTAGGATTAGAGAGGGCAAAACTCCATGGGTGGCAAGATA CATATGTGTTCACCAAGGCCATGGGAGAGATGGTGATCAACTCCATGCGAGGAGATATAC CGGTTGTCACCATCAGGCCAAGCGTCATCGAGAGCACCTGGAGGGATCCCTTCCCCGGTT GGATGGAAGGGAACAGGATGATGGATCCTGTTGTGCTGTACTACGGCAAAGGCCAGCTGA GCGGGTTCCTCGCTGACCCGGAGGGTGTTCTTGACGTGGTTCCGGCGGACATGGTGGTGA ACGCAACGCTGGCGTCCATGGCGAAGCACGGGCGCGGCGGCGCGGCGGCGGCGGCGGCGG CGGCGGAGGGGATGCACGTGTACCACGTGGCGTCGTCGACGGTGAACCCGCTGGCGTTCG GCGACCTGAGCCGGTTCCTCTTCCAGCACTTCACGGGGTCGCCGTACAGCGACGCGGCGG GGCGGCCCATCCACGTGCCGCCGATGCGGCTGTTCGACACCATGGAGCAGTTCGCCAGCT ACGTCGAGACCGACGCGCTGCTGCGCGCCGGCCGCCTCGCCGGCGCCGGCGCCGGCGCCG GAGACGAGAGGGTGTCGCAGCGGCTGCGCGAGCTCTGCGCCAAGTCCGTCGAGCAGACCA TCTACCTCGGCAGCATCTACCAGCCCTACACCTTCTACGGCGGCAGGTTCGACAATGGGA ACACGGAGGCGCTGATCGGGGAGATGTCGGAGGAGGAGAAGGCGCGGTTCCACTTCGACG TGAGGAGCATCGAGTGGACGGACTACATCACCAACGTGCACATCCCGGGGCTCAGGAAGC ACGTCATGAAGGGGAGGGGCGTCGGCGGCGGCAGCGGCGCGTCGTCGTCATCGAACGCCT CGCTGCTCGCCGGCGCCTCCGTTTGAATGGCCAGGCCGGCGCCGGAGAAGAGGAGGATGC ATGCGCGGCGTGTACACTAGGCTAGATTGTTGTTAACTTGTTCTGCCGTGGCAGTCTGAC AGATGATCTTTGTGCTGCAGTAATTAAGGTTGATAGTATGTTATCTCTATCACTATGTAA TCAGAGCAAAAATTGGCAATCAATTTAACAGAATTTACAAAAGATGCACATAATTCAGAA AAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)