cluster # 4151

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4151 cluster # 4151 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4151#0 length = 878 sequences # 2

consensus_4151#1 length = 604 sequences # 1

consensusID : consensus_4151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 878
fasta sequence

                              [GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAAGTAAGTTGTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGCAAGGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTATATGCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGCCATCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGGAGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCACAAATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACAAATTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCATATATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA]

[-] EMBL AK121267             [GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAAGTAAGTTGTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGCAAGGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTATATGCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGCCATCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCA                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK066447             [                                                                                                                                                                                                                                                             CTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGGAGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCACAAATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACAAATTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCATATATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA]




>consensus_4151#0
GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAAGTAAGTT
GTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGCAA
GGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTATAT
GCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGCCA
TCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGTCG
CCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAGAG
GGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGG
CGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAAC
ACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCG
CCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATG
GAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGGAG
CATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCACAA
ATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACAAA
TTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCATAT
ATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA

consensusID : consensus_4151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCCTCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCCTCATCCCATCCCCCCACGGCGGGCGGCGTGCTGCGGTGGGCACGCGCAGCCTCCGGCCCAACCCCCCCCACCGTCGGGTGTCGGGGCGGCCGCGTCGCGCCCAGCGGGCCTACCGCGCGGCTTCCTCANACACCCGCCCCTCAGCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGACGCCACCTCCTCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGACGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATA]

[-] EMBL CA754573             [CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCCTCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCCTCATCCCATCCCCCCACGGCGGGCGGCGTGCTGCGGTGGGCACGCGCAGCCTCCGGCCCAACCCCCCCCACCGTCGGGTGTCGGGGCGGCCGCGTCGCGCCCAGCGGGCCTACCGCGCGGCTTCCTCANACACCCGCCCCTCAGCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGACGCCACCTCCTCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAGAGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGACGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAGGATA]




>consensus_4151#1
CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCC
TCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCCTCATCCCATCCCCCCACGGCGGG
CGGCGTGCTGCGGTGGGCACGCGCAGCCTCCGGCCCAACCCCCCCCACCGTCGGGTGTCG
GGGCGGCCGCGTCGCGCCCAGCGGGCCTACCGCGCGGCTTCCTCANACACCCGCCCCTCA
GCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGACGCCACCTCC
TCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAGAGGGAGAGGCC
GCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGACGACGTCGT
CCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGAACACCGCCGTG
GCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAGCGCCGCTACCT
CGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGATGGAAAGTGAG
GATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4151#0      -GTTAGCTATACTATTAAACTTGCTCTTAGAGCGAGTACAATAGCAGTCTACAA-GTAAG 58
consensus_4151#1      CGTGGACGTGGCGAAGGTGCTCGCCCCCTCGCCCCGAGCCCGCGTGCCCGGCGCCGCCCC 60
                       **   *    * *     ** ** *      *  *  *    *    *  *   *    

consensus_4151#0      TTGTAATCACATATAGAGGAGATAAGAGATAGAAGGAAAGCGGTTGTAGCCCGCTGCAGC 118
consensus_4151#1      TCGCGCCTTCGTGCTTGGGCCGCGCGCGACTGGGGCC---TCATCCCATCCCCCCACGGC 117
                      * *      * *     **      * **  *  *        *   * *** *  * **

consensus_4151#0      AAGGACTCCAATATATTGTGTGTGTATAAGATGTGAGACTATACATTAATGCTGTAGTAT 178
consensus_4151#1      GGGCGGCGTGCTGCGGTGGGCACGCGCAGCCTCCG-GCCCAACCCCCCCCACCGTCGGGT 176
                        *        *    ** *   *   *   *  * * * *  *       * ** *  *

consensus_4151#0      ATGCTTATAGGTAACTATTGTATGGATGAGCTATTAGATCGACTAGGCCATCGTCGTCGC 238
consensus_4151#1      GTCGGGGCGGCCGCGTCGCGCCCAGCGGGCCTACC------GCGCGGCTTCCTCANACAC 230
                       *       *     *   *    *  *  ***         *  ***   *     * *

consensus_4151#0      CATCCTCCTCTTCCGCTGCCAAGCTCATCGCCCGCCTCCTCTCCGCGCTATCGAGCTCGT 298
consensus_4151#1      CCGCCCCTCAGCGCGCTGCCAAGCTCGTGGCCGGCGTCCTCTCCGCGCTATCTAGCTGGA 290
                      *  ** *      ************* * *** ** **************** **** * 

consensus_4151#0      CGCCTGCCTCCTCTCCGCGACGCCGAGCTTGTCGGCCCGTCTCCCAGATCTACACCGGAG 358
consensus_4151#1      CGCC-ACCTCCTCTGAGCAGCACCAAGCTGGTCGGNCCGTCTGGCAGATCTACACCGGAG 349
                      ****  ********  **  * ** **** ***** ******  ****************

consensus_4151#0      AGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGC 418
consensus_4151#1      AGGGAGAGGCCGCGCCGGTGTGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGC 409
                      ************************************************************

consensus_4151#0      GGCGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGA 478
consensus_4151#1      GACGACGTCGTCCTCCTCTCCGCCGCCGCTCTTCCTCGCCCCTGGAGAGAGGAACGTCGA 469
                      * **********************************************************

consensus_4151#0      ACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAG 538
consensus_4151#1      ACACCGCCGTGGCTTCCTGCCCACTGCCACTCCGGTCGCCGCTCACTTCCTCCGCCTCAG 529
                      ************************************************************

consensus_4151#0      CGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGA 598
consensus_4151#1      CGCCGCTACCTCGCTTCCTTCCGCCGGTAGGGAACGGATAAAGGAGAGAGAGAGGAGAGA 589
                      ************************************************************

consensus_4151#0      TGGAAAGTGAGGATAGAAAAAAAGACTGGTGGGACCCACTCAAAGGAATATGCACCGTGG 658
consensus_4151#1      TGGAAAGTGAGGATA--------------------------------------------- 604
                      ***************                                             

consensus_4151#0      AGCATGTATCTAACAATGTTCTTGGGTGTTCTTGAGCTAAGTTGGCACACGAGGCTCCAC 718
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      AAATATTTGTGACCCACTGCTAATACCCTAAGAGAGGAGAGATAAGGAAAACGGGTTACA 778
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      AATTTATAGCCAGCCGCAGCACGTACTCCAAAACACTATGTGTATGAGAGGTGAGATCAT 838
consensus_4151#1      ------------------------------------------------------------
                                                                                  

consensus_4151#0      ATATTAATCGTGTAATATATGTTTATAAGTAACTATGGTA 878
consensus_4151#1      ----------------------------------------