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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2092 fasta sequence
[AGATCGACTTCGCCCCGCCCCGCCCCGCCGCCTTCCTCCGCCGCCGATCTCCATCCCGCGAGGGTGAAGCAGCGTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTCGCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTCAGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCCCGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTCGAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCGGCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCGCTATCGCGGNACGTTGTTGATCCTCTGGCGACGGAAGCGTTGAAAAGCGCGATCATTGGCTCGCTTTGTCGTCCCTTTGCAGATTGTCTGATGAGCACTAAGGTGGAGAGCAACTCTTTTGGCTCTGCTCTTTGTGTCGCCGCGCTTGTGCAATCCAACAACTGGCGGTTTGCGTCTAACGAGCTGGTTAATGATGTCTGCTTGAAAGTCTCAGGGGCCCTAGAGGAGGCGCATGCTCAGAGTATCGCGCACTTAAACTTGGTGGTTGTTTTGCTGACACAAAATCCACTGATGCTTGAGCCTTATGGCCGATCTTTGATTCGATCGGGCTTACAGATACTGGATGAGAGTGCTAAGGCAAGCAGTTCTCAGATGATTATTTCATCGATTCAAATGATACATTCCATCATGAAGGGTTTGGATCTAGGCATTATATCTTCTGAGATCAGTAGTATTATCCATGCTATGGAACAATTCCAGGACGACACTATGCCAGCCATCAGCATTGCAGCTTTCGAGGCATCTGAGACTGCTAAGCTACTTGTTGGCAGGCAAAAAGAGAGTGGGCATGACAATAATTTGAGTCAGTTAGCAAACTATTCTGTAAGAAATGGCAGAAAGGGTTCATATTCACATTCTCTCATGGATGATGCGGATATCAGAGACGATGGTTCATGTGATTCACATTCTTGTGACCTGAACTCTGTTCATTTGTCTACTGATTTTGATTCTCAACATTCAGTGGGACAATGTGGTTCTGGAAGCACACGTGCAAGGCGGCAGCTATGGTGTAACAAATCTGACAAATCACATGGAATGTCCAATCATGACTTATTTCGCACTGTTATTCCAGATAGTCATGAGGCTTCAGGTTTGATGGCACATTTCAGCTCTGTTGATCCAATTAAGCCAGACAGGAGGTTGTCAGATGTGCCAACAAGAGTTGCTGGCCCATGTTATGTCTGTTCAGCAGCGCATGAAACGAATCACTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACAGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTACCATTTCTGGATGTACTTTTCTC]
[+] EMBL AU184131 [AGATCGACTTCGCCCCGCCCCGCCCCGCCGCCTTCCTCCGCCGCCGATCTCCATCCCGCGAGGGTGAAGCAGCGTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTCGCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTCAGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCCCGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTCGAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCGGCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCGCTATCGCGGNACGTT ]
[+] EMBL AK103828 [ GTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTCGCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTCAGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCCCGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTCGAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCGGCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCGCTATCGCGGTACGTTGTTGATCCTCTGGCGACGGAAGCGTTGAAAAGCGCGATCATTGGCTCGCTTTGTCGTCCCTTTGCAGATTGTCTGATGAGCACTAAGGTGGAGAGCAACTCTTTTGGCTCTGCTCTTTGTGTCGCCGCGCTTGTGCAATCCAACAACTGGCGGTTTGCGTCTAACGAGCTGGTTAATGATGTCTGCTTGAAAGTCTCAGGGGCCCTAGAGGAGGCGCATGCTCAGAGTATCGCGCACTTAAACTTGGTGGTTGTTTTGCTGACACAAAATCCACTGATGCTTGAGCCTTATGGCCGATCTTTGATTCGATCGGGCTTACAGATACTGGATGAGAGTGCTAAGGCAAGCAGTTCTCAGATGATTATTTCATCGATTCAAATGATACATTCCATCATGAAGGGTTTGGATCTAGGCATTATATCTTCTGAGATCAGTAGTATTATCCATGCTATGGAACAATTCCAGGACGACACTATGCCAGCCATCAGCATTGCAGCTTTCGAGGCATCTGAGACTGCTAAGCTACTTGTTGGCAGGCAAAAAGAGAGTGGGCATGACAATAATTTGAGTCAGTTAGCAAACTATTCTGTAAGAAATGGCAGAAAGGGTTCATATTCACATTCTCTCATGGATGATGCGGATATCAGAGACGATGGTTCATGTGATTCACATTCTTGTGACCTGAACTCTGTTCATTTGTCTACTGATTTTGATTCTCAACATTCAGTGGGACAATGTGGTTCTGGAAGCACACGTGCAAGGCGGCAGCTATGGTGTAACAAATCTGACAAATCACATGGAATGTCCAATCATGACTTATTTCGCACTGTTATTCCAGATAGTCATGAGGCTTCAGGTTTGATGGCACATTTCAGCTCTGTTGATCCAATTAAGCCAGACAGGAGGTTGTCAGATGTGCCAACAAGAGTTGCTGGCCCATGTTATGTCTGTTCAGCAGCGCATGAAACGAATCACTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACAGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTACCATTTCTGGATGTACTTTTCTC]
consensusID : consensus_4155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[AGCGCATGAAACGAATCNCTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACCGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTTCCAAAAAAAAAAAAAA]
[-] EMBL CA761094 [AGCGCATGAAACGAATCNCTGCTCTCAGATATCCAGGGCACAGGTTTTATCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGTAGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCAGGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAATTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATAGAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCTCCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCAAACCGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTCTTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTTGTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAGTATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGATAAGGTGATGGAATGGTTAAAAAGTTGTTCCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4155#0 AGATCGACTTCGCCCCGCCCCGCCCCGCCGCCTTCCTCCGCCGCCGATCTCCATCCCGCG 60
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 AGGGTGAAGCAGCGTTGCCGGCGTCGTCCCCCTCCTGCTCACTTCCTCTTCCTTCCGCTC 120
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GCCGCCGGGGGCGCGCTCTCTCTGATGGTGATGGATCCCCTTACCAACAAGGCTGCCTTC 180
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 AGTGGCCTGAGACAGTATGTGAAGGAGCTTGATTCGAACACGCTCCCGCCATTTCTTGCC 240
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 CGCGTTTGTGACCCCGTGAAGCCATGCTCCTTCTCCGAGGAGGAGATGCTGTGCATCTTC 300
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GAGACCGCCGCGCAAGCGCACGGCCGCAAGATTGTGCCGCACATCGCCCTGATCGTCTCG 360
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GCAATCGTTAGGATGATGTCCTCGCGGAATGCCGTTGGTTGCTCCAAGGTTGTTTGCGCG 420
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 CTATCGCGGNACGTTGTTGATCCTCTGGCGACGGAAGCGTTGAAAAGCGCGATCATTGGC 480
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 TCGCTTTGTCGTCCCTTTGCAGATTGTCTGATGAGCACTAAGGTGGAGAGCAACTCTTTT 540
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GGCTCTGCTCTTTGTGTCGCCGCGCTTGTGCAATCCAACAACTGGCGGTTTGCGTCTAAC 600
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GAGCTGGTTAATGATGTCTGCTTGAAAGTCTCAGGGGCCCTAGAGGAGGCGCATGCTCAG 660
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 AGTATCGCGCACTTAAACTTGGTGGTTGTTTTGCTGACACAAAATCCACTGATGCTTGAG 720
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 CCTTATGGCCGATCTTTGATTCGATCGGGCTTACAGATACTGGATGAGAGTGCTAAGGCA 780
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 AGCAGTTCTCAGATGATTATTTCATCGATTCAAATGATACATTCCATCATGAAGGGTTTG 840
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GATCTAGGCATTATATCTTCTGAGATCAGTAGTATTATCCATGCTATGGAACAATTCCAG 900
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GACGACACTATGCCAGCCATCAGCATTGCAGCTTTCGAGGCATCTGAGACTGCTAAGCTA 960
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 CTTGTTGGCAGGCAAAAAGAGAGTGGGCATGACAATAATTTGAGTCAGTTAGCAAACTAT 1020
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 TCTGTAAGAAATGGCAGAAAGGGTTCATATTCACATTCTCTCATGGATGATGCGGATATC 1080
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 AGAGACGATGGTTCATGTGATTCACATTCTTGTGACCTGAACTCTGTTCATTTGTCTACT 1140
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GATTTTGATTCTCAACATTCAGTGGGACAATGTGGTTCTGGAAGCACACGTGCAAGGCGG 1200
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 CAGCTATGGTGTAACAAATCTGACAAATCACATGGAATGTCCAATCATGACTTATTTCGC 1260
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 ACTGTTATTCCAGATAGTCATGAGGCTTCAGGTTTGATGGCACATTTCAGCTCTGTTGAT 1320
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 CCAATTAAGCCAGACAGGAGGTTGTCAGATGTGCCAACAAGAGTTGCTGGCCCATGTTAT 1380
consensus_4155#1 ------------------------------------------------------------
consensus_4155#0 GTCTGTTCAGCAGCGCATGAAACGAATCACTGCTCTCAGATATCCAGGGCACAGGTTTTA 1440
consensus_4155#1 -----------AGCGCATGAAACGAATCNCTGCTCTCAGATATCCAGGGCACAGGTTTTA 49
***************** *******************************
consensus_4155#0 TCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGT 1500
consensus_4155#1 TCAGGTGACATGAGGATGAATTCTACTCCAAGAAAGCAACTCCATTCTTGCACCTTCTGT 109
************************************************************
consensus_4155#0 AGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCA 1560
consensus_4155#1 AGAGACCCAGAACAAGATGGTCACCCACCACTTGAAAGTCCAGCTATACAACACTGCTCA 169
************************************************************
consensus_4155#0 GGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAA 1620
consensus_4155#1 GGGCCAGGTACTAATATTCTTCAGTTCAGAAAAAACAGTGAGCTTAAGGAAAGAAAAGAA 229
************************************************************
consensus_4155#0 TTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATA 1680
consensus_4155#1 TTTTGGGACTCAATTCGGCAGGAAAATCAATGCCATATGCAAAACACTGATGCCCTAATA 289
************************************************************
consensus_4155#0 GAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCT 1740
consensus_4155#1 GAAGATTTGAAGTTCCCGGCTGACGATGATGATGAGGATTTTGATGGTGCAGCCAAATCT 349
************************************************************
consensus_4155#0 CCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCA 1800
consensus_4155#1 CCATGTCAAGAATGTCAAGCTGTGAATGAGAAGAAGACTGGAGGCAAGAAAAGAAATGCA 409
************************************************************
consensus_4155#0 AACAGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTC 1860
consensus_4155#1 AACCGTTCTCACTATCCAGTTTTTCTTTTCGTTTTTGTTGTGGCAATCATTGCTCTCTTC 469
*** ********************************************************
consensus_4155#0 TTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTT 1920
consensus_4155#1 TTTCCTTGGTGGAAGGACTACAAAGAGCCTTATGTTGTTCCTACATAAACATATCTGTTT 529
************************************************************
consensus_4155#0 GTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAG 1980
consensus_4155#1 GTTTTGCGATGTGCATCAAGCCATCCGTTTTTTCAGGAATTGTATGGTGGCAATCTTTAG 589
************************************************************
consensus_4155#0 TATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGA 2040
consensus_4155#1 TATACAGAAATTATAGGCAGCAGTTTACATGGATGACTTTGAATGGTGTAAATTCTGTGA 649
************************************************************
consensus_4155#0 TAAGGTGATGGAATGGTTAAAAAGTTGTACCATTTCTGGATGTACTTTTCTC 2092
consensus_4155#1 TAAGGTGATGGAATGGTTAAAAAGTTGTTCCAAAAAAAAAAAAAA------- 694
**************************** *** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||