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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1463 fasta sequence
[CAAAAAAGAACAAAAATCGCCATTAGCTGGCTGCTAGTGGAGTATTTCTGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCGCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCGCAGCCGCCGCCGACGGCGGCGACATCGAGGAGGTGGACCGCCTCAAGAAGAGGATCAGGACCCTCGAGATGGAGGAGACGAAGTTGAACCAGCATATGGAACGCGTCATCCAGGGAATCGAAGCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAGGATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTCCGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTTGACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAGCTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATTCACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGTGGTGATAGGGAAGTGCAACAAACAATTGTGGAGCTTCTTAATCAGTTGGATGGCGTCGGGAGCTATGAGAGTATAAAGGTAATAGCTGCAACTAATCGGCCAGAAGTTCTTGATCCTGCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTGAACAGGCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAACTTTGAAGAGTTGGCTTGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGCTTTGAGGCTAGCATGCTGGCATTTCACCGAGATGCTACAGAGGTTCGGCATGAGGACTTTGTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTACTATGCATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAGAAGCTACTGTCACCTAACTCAAATTTTTACCATGTCTTAGATACGAGAGATCAAGTATAGTTTGAAAACAGTGGTCTGTATAGTACTGATTAGTAAGTTGAGAAATATTTGAGGCTCATAGTAGGAAGCTAATCAGAAAAGGCAACAATTGTTTTTGATAACCTTGCAAGATTTGAGTTTTTTTGACAACAGCA]
[+] EMBL AK071386 [CAAAAAAGAACAAAAATCGCCATTAGCTGGCTGCTAGTGGAGTATTTCTGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCGCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCGCAGCCGCCGCCGACGGCGGCGACATCGAGGAGGTGGACCGCCTCAAGAAGAGGATCAGGACCCTCGAGATGGAGGAGACGAAGTTGAACCAGCATATGGAACGCGTCATCCAGGGAATCGAAGCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAGGATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTCCGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTTGACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAGCTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATTCACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGATAGTGGTGATAGGGAAGTGCAACAAACAATTGTGGAGCTTCTTAATCAGTTGGATGGCGTCGGGAGCTATGAGAGTATAAAGGTAATAGCTGCAACTAATCGGCCAGAAGTTCTTGATCCTGCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTGAACAGGCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAACTTTGAAGAGTTGGCTTGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGCTTTGAGGCTAGCATGCTGGCATTTCACCGAGATGCTACAGAGGTTCGGCATGAGGACTTTGTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTACTATGCATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAGAAGCTACTGTCACCTAACTCAAATTTTTACCATGTCTTAGATACGAGAGATCAAGTATAGTTTGAAAACAGTGGTCTGTATAGTACTGATTAGTAAGTTGAGAAATATTTGAGGCTCATAGTAGGAAGCTAATCAGAAAAGGCAACAATTGTTTTTGATAACCTTGCAAGATTTGAGTTTTTTTGACAACAGCA]
[+] EMBL CF196828 [ GCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAGGATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTCCGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTTGACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAGCTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATTCACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAGAAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAATCACTTTGATAGTGGTGATAGGGAAGTGCANCNNNCNATTGTGGAGCNNCNTAATCAGTT ]
consensusID : consensus_4158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[CTTTTATAATTATTCAGACTTCTTACGTGGATATTTGCAGATTGATAAACTGACATATAATTACCAGTTAAAAGAAAAAAGATTACCTACCAAATCGCTTTTTGCCCAGCTCCAAAAAAAACCAAAATCCCCATTAGCTGGCTGCTAATGGAGGATTTCGGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCCCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCCCACCCGCCGCCGACGGAGGCGACATCTAGGAGGGGGACCCCCTCAAAAAAAGGATCCGGACCCTCCAGGGGAGAACCCGCGTCCCTCGGCCCGGGTCGGTTCTTGCAGCCGCCATTGGTCGATCAAACGATCGGTTCTTCTTGGTTTCTCGCTGGGGGGGTTTCACCTCCAATGGAGGGGGGATGGCTTGTTTATTTGCTTGCTTGC]
[+] EMBL CB678928 [CTTTTATAATTATTCAGACTTCTTACGTGGATATTTGCAGATTGATAAACTGACATATAATTACCAGTTAAAAGAAAAAAGATTACCTACCAAATCGCTTTTTGCCCAGCTCCAAAAAAAACCAAAATCCCCATTAGCTGGCTGCTAATGGAGGATTTCGGGGCGGGGCGCTCTCTTCCCTTCCCCCCGCGCCTCCACTTCCCCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCCCCACCCGCCGCCGACGGAGGCGACATCTAGGAGGGGGACCCCCTCAAAAAAAGGATCCGGACCCTCCAGGGGAGAACCCGCGTCCCTCGGCCCGGGTCGGTTCTTGCAGCCGCCATTGGTCGATCAAACGATCGGTTCTTCTTGGTTTCTCGCTGGGGGGGTTTCACCTCCAATGGAGGGGGGATGGCTTGTTTATTTGCTTGCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4158#0 ------------------------------------------------------------
consensus_4158#1 CTTTTATAATTATTCAGACTTCTTACGTGGATATTTGCAGATTGATAAACTGACATATAA 60
consensus_4158#0 ---------------------------------------------------CAAAAAAGA 9
consensus_4158#1 TTACCAGTTAAAAGAAAAAAGATTACCTACCAAATCGCTTTTTGCCCAGCTCCAAAAAAA 120
* ***** *
consensus_4158#0 ACAAAAATCGCCATTAGCTGGCTGCTAGTGGAGTATTTCTGGGCGGGGCGCTCTCTTCCC 69
consensus_4158#1 ACCAAAATCCCCATTAGCTGGCTGCTAATGGAGGATTTCGGGGCGGGGCGCTCTCTTCCC 180
** ****** ***************** ***** ***** ********************
consensus_4158#0 TTCCCCCCGCGCCTCCACTTCCGCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCC 129
consensus_4158#1 TTCCCCCCGCGCCTCCACTTCCCCCTCCGCCTCGCGCCACCGACCATGCCTTCCTCCGCC 240
********************** *************************************
consensus_4158#0 GCAGCCGCCGCCGACGGCGGCGACATCGAGGAGGTGGACCGCCTCAAGAAGAGGATCAGG 189
consensus_4158#1 CCACCCGCCGCCGACGGAGGCGACATCTAGGAGGGGGACCCCCTCAAAAAAAGGATCCGG 300
** ************* ********* ****** ***** ****** ** ****** **
consensus_4158#0 ACCCTCGAGATGGAGGAGACGAAGTTGAACCAGCATATGGAACGCGTCATCCAGGGAATC 249
consensus_4158#1 ACCCTCCAG--GGGAGAACCCGCGTC---CCTCGGCCCGGGTCGGTTCTTGCAGCCGCCA 355
****** ** ** ** * ** ** ** ** ** * ***
consensus_4158#0 GAAGCGAACGAGGCGTACCTCGTCGGCATGGTCCTCAGGATTATGGAAAAGGGCCCAGAG 309
consensus_4158#1 TTGGTCGATCAAACG------ATCGGTTC--TTCTTGGTTTCTCGCTGGGGGGGTTTCAC 407
* * * ** **** * ** * * * *** *
consensus_4158#0 GATGAGACTGCTGAGGATGATTGTGATGTTGGCTTTCATTTGCAGCGAAAAATTATATTC 369
consensus_4158#1 CTCCAATGGAGGGGGGATGGCTTGTTTATTTGCTT--GCTTGC----------------- 448
* * ***** * * ** **** ****
consensus_4158#0 CGTCCTATTGCTGGGGTAGTGTACCCTAGCAAACTTAAGCCTGGAGATTTAATTGGTGTT 429
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GACAGTACATCAAATGAACACTACTGTGGCATTGGTGGTCTCGAAAAACAAATTGAGGAG 489
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 CTTGTGGAAGCAGTTGTGTTGCCAATAATCCACAAGAACTGCTTCCAGAGGTTGGGAATT 549
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 CACCCTCCAAAAGGTGTACTTCTGTATGGACCACCTGGAACTGGGAAGACACTCGTTGCC 609
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 CATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCC 669
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GTGAAGCTTATTGGTGAGGGAGCAAGACTTGTTCGTGATGCCTTTCAGCTTGCTAAAGAG 729
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 AAAGCCCCATGCATTATTTTCATTGATGAAATTGATGCAATTGGAAGCAAGCACTTTGAT 789
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 AGTGGTGATAGGGAAGTGCAACAAACAATTGTGGAGCTTCTTAATCAGTTGGATGGCGTC 849
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GGGAGCTATGAGAGTATAAAGGTAATAGCTGCAACTAATCGGCCAGAAGTTCTTGATCCT 909
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTGAACAG 969
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAAC 1029
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 TTTGAAGAGTTGGCTTGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGC 1089
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 TTTGAGGCTAGCATGCTGGCATTTCACCGAGATGCTACAGAGGTTCGGCATGAGGACTTT 1149
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTACTATG 1209
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 CATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAG 1269
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 AAGCTACTGTCACCTAACTCAAATTTTTACCATGTCTTAGATACGAGAGATCAAGTATAG 1329
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 TTTGAAAACAGTGGTCTGTATAGTACTGATTAGTAAGTTGAGAAATATTTGAGGCTCATA 1389
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 GTAGGAAGCTAATCAGAAAAGGCAACAATTGTTTTTGATAACCTTGCAAGATTTGAGTTT 1449
consensus_4158#1 ------------------------------------------------------------
consensus_4158#0 TTTTGACAACAGCA 1463
consensus_4158#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||