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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1167 fasta sequence
[CTCAAGATTTTATTTTCCCTTTTTGAGCAATATCGGGCATGTGGCATACTTTCAATAGGCCTTTCCCTCCAATGATTGCGAACTTCCAAAGGGTACAATTATGGCATTGAACTGCACTGCCATCCTCAAAAATTCAAACTGTTCTATCCAAAACAGTTTGTGCCTTCCCCCTACAAAATTCAGACCACCATGTTAAACAAATTGCATCCTTGATGTGTACCATTTAGTCCATACAATATCAGTCAAAAAATAATGGCAAGATAGTGCATTACCTTTATCCATGCATGGAGAGTACAAGCTCTTACCATTCTATTTTGTTGCTACCAACATATGTACAGGGAGGGTACTTATATCATTAGAGGCCCTTAACCCACTTTTAAAGGGCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATACCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAATTTAGTTCATGGCAAATTATGAAGTTTCTGAATACTTCATATTTAGCTAGATCTCACCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTATATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGCTGAAACCAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCCCCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCAGGAGC]
[+] EMBL CB679066 [CTCAAGATTTTATTTTCCCTTTTTGAGCAATATCGGGCATGTGGCATACTTTCAATAGGCCTTTCCCTCCAATGATTGCGAACTTCCAAAGGGTACAATTATGGCATTGAACTGCACTGCCATCCTCAAAAATTCAAACTGTTCTATCCAAAACAGTTTGTGCCTTCCCCCTACAAAATTCAGACCACCATGTTAAACAAATTGCATCCTTGATGTGTACCATTTAGTCCATACAATATCAGTCAAAAAATAATGGCAAGATAGTGCATTACCTTTATCCATGCATGGAGAGTACAAGCTCTTACCATTCTATTTTGTTGCTACCAACATATGTACAGGGAGGGTACTTATATCATTAGAGGCCCTTAACCCACTTTTAAAGGGCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATACCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAATTTAGTTCATGGCAAATTATGAAGTTTCTGAATACTTCATATTTAGCTAGATCTCACCTAGAATGGAGCAAGCCG ]
[-] EMBL CB679065 [ TTTAACGTGCTCAAAGTTCCCGTATATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATACCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAGTTTAGTTCATGGCAAATTATGAAGTTTCTGAATACTTCATATTTAGCTAGATCTCACCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTATATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGCTGAAACCAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCCCCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCAGGAGC]
consensusID : consensus_4159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1012 fasta sequence
[AAGCCTGATTCTGAAAAAACAAATTAGCAGTCACACAGTTTGACAGAATTAGGACGTAATTAGCAGTTGGCTTGAGGTGATTACTGTATGCTTGCACTGTTGCACAAGATTCTTGCCAAAGGGTGCGTTTCTAGCAAGCGCAGAGAAACTGAGCAATAGGGGCATGTGGCATACTTTCAACAGGTCTTCCCCTCCAATGATTCCGAACTTCCAAAGGGCACAATTATGGCATTGAACTGCACTGCCATCCTCACAAATTCAGTCTGTTCTAGCCAACACAGTTTGTGCCTTCGCCCATTCTATTTTGTTGCTACCAACATATGTCCAGTGAGGTTACTTATATCAGTAGAGGCCCTTAAGCCACTTTTAAAGGTCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTCTATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGTTGAAAACAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCACCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCGGAAGCGGCGATAGGAGCGGGCGG]
[-] EMBL AK110949 [AAGCCTGATTCTGAAAAAACAAATTAGCAGTCACACAGTTTGACAGAATTAGGACGTAATTAGCAGTTGGCTTGAGGTGATTACTGTATGCTTGCACTGTTGCACAAGATTCTTGCCAAAGGGTGCGTTTCTAGCAAGCGCAGAGAAACTGAGCAATAGGGGCATGTGGCATACTTTCAACAGGTCTTCCCCTCCAATGATTCCGAACTTCCAAAGGGCACAATTATGGCATTGAACTGCACTGCCATCCTCACAAATTCAGTCTGTTCTAGCCAACACAGTTTGTGCCTTCGCCCATTCTATTTTGTTGCTACCAACATATGTCCAGTGAGGTTACTTATATCAGTAGAGGCCCTTAAGCCACTTTTAAAGGTCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTAGAATGGAGCAAGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTCTATGCTGCTGTTGTTGTGGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCGATTCGTTAGTGTTGAAAACAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATCAGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCTTCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCACCGCCAATCTAGATCTGGCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCGATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGACGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGATTCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGGAGCGGCACAGGCGAAGCCCGGAGCGGCGGAAGCGGCGATAGGAGCGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4159#0 CTCAAGATTTTATTTTCCCTTTTTGAGCAATATCGGGCATGTGGCATACTTTCAATAGGC 60
consensus_4159#1 ------------------------------------------------------------
consensus_4159#0 CTTTCCCTCCAATGATTGCGAACTTCCAAAGGGTACAATTATGGCATTGAACTGCACTGC 120
consensus_4159#1 ------------------------------------------------------------
consensus_4159#0 CATCCTCAAAAATTCAAACTGTTCTATCCAAAACAGTTTGTGCCTTCCCCCTACAAAATT 180
consensus_4159#1 ---------------------------------------AAGCCTGATTCTGAAAAAA-- 19
**** * * ****
consensus_4159#0 CAGACCACCATGTTAAACAAATTG-CATCCTTGATGTGTACCATTTAGTCCATACAATAT 239
consensus_4159#1 CAAATTAGCA-GTCACACAGTTTGACAGAATTAGGACGTAATTAGCAGTTGGCTTGAGGT 78
** * * ** ** * *** *** ** ** *** *** * *
consensus_4159#0 CAGTCAAAAAATAATGGCAAGATAGTGCATTACCTTTATCCATGCATGGAGAGTACAAGC 299
consensus_4159#1 -GATTACTGTATGCTTGCACTGTTGCACAAGATTCTTGCCAA-------AGGGTGC--GT 128
* * ** * *** * * ** * ** * * ** ** * *
consensus_4159#0 TCTTACCATTCTATTTTGTTGCTACCAACATATGTACAGGGAGGGTACTTATATCATTAG 359
consensus_4159#1 TTCTAGCAAGC-GCAGAGAAACTGAGCA-ATAGGGGCATGTGGCATACTTTCAACAGGTC 186
* ** ** * * ** * *** * ** * * ***** * **
consensus_4159#0 AGGCCCTTAACCCACTTTTAAAGGGCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTC 419
consensus_4159#1 TTCCCCTCCAATGATTCCGAACTTCCAAAGG-GCACAATTATGGCATTGAACTGCACTGC 245
**** * * * ** ** ** ** * * *** * ** * * * *
consensus_4159#0 TATAGAATTGACTTAAAACCATCAATCTTAATATACAAATTATTGATTTCAATTATCATA 479
consensus_4159#1 CATCCTCACAAATTCAGTCTGTTCTAGCCAACACA---GTTTGTGCCTTCGCCCATTCTA 302
** * ** * * * ** * * ** ** *** ** **
consensus_4159#0 CCTCGGAGGCTCAGGCTCAAATAACATGCTTTGTAATAAAGTAAATTTAGTTCAT--GGC 537
consensus_4159#1 TTTTGTTGCTACCAACATATGTCCAGTGAGGT-TACTTATATCAGTAGAGGCCCTTAAGC 361
* * * * * * * ** * ** * * * * * ** * * **
consensus_4159#0 AAATTATGAAGTTTCTGAATACTTCATATTTAGCT---AGATCTCACCTAGAATGGAGCA 594
consensus_4159#1 CACTTTTAAAGGTCAGAGATGCTCTTTAATGTGCTCAAAGTTCCCCTCTAGAATGGAGCA 421
* ** * *** * ** ** ** * *** ** ** * *************
consensus_4159#0 AGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTATATGCTGCTGTTGTTGT 654
consensus_4159#1 AGCCGGGGGGGTATTCAGGTAGCATCACAGGCTGCCGCCCCTCTATGCTGCTGTTGTTGT 481
****************************************** *****************
consensus_4159#0 GGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCG 714
consensus_4159#1 GGAACCACGACGAAGCGTTCAGGTCACATTTCATGTCGCTCTCTAACTGCATATATCTCG 541
************************************************************
consensus_4159#0 ATTCGTTAGTGCTGAAACCAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATC 774
consensus_4159#1 ATTCGTTAGTGTTGAAAACAGGATGCATGGCCAGGTTGATTCGCGTTGTCGCAGGAGATC 601
*********** ***** ******************************************
consensus_4159#0 AGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCT 834
consensus_4159#1 AGCGAGCCGAGGTGATGGCGACGATCCGCGCCGCCGGCCAAGGAGGTTGCTGGAACAGCT 661
************************************************************
consensus_4159#0 TCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCCCCGCCAATCTAGATCTG 894
consensus_4159#1 TCCAACAGTAGGGAAGGGCGCCATCGTTGATGGCTGGGGCTCACCGCCAATCTAGATCTG 721
****************************************** *****************
consensus_4159#0 GCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCG 954
consensus_4159#1 GCCACTGAAGGGGGCGCGGAGGAGGTCAACGCGGGATCGGTGGTGGCACGGAGGAGATCG 781
************************************************************
consensus_4159#0 ATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGA 1014
consensus_4159#1 ATGAGAGGCGATCCGTGGAGGTGGCAATGGGCGATTGGCGCGCGGCGTGGTCGTGGGCGA 841
************************************************************
consensus_4159#0 CGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGAT 1074
consensus_4159#1 CGGAGATCGGCCTGGCGGGCGGCGATGGCGTGGCCGCGGAAGAAGGGCGGCGATAGGGAT 901
************************************************************
consensus_4159#0 TCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGG 1134
consensus_4159#1 TCGGCGGTTGTACGGGTAGGGGATGGCGCGACGACGGGCGGCGCAAGCGCCAGTCGAGGG 961
************************************************************
consensus_4159#0 AGCGGCACAGGCGAAGCCCGGAGCGGCAGGAGC------------------ 1167
consensus_4159#1 AGCGGCACAGGCGAAGCCCGGAGCGGCGGAAGCGGCGATAGGAGCGGGCGG 1012
*************************** * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||